Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq30 102 2e-16 seq6 100 6e-16 seq26 91.5 3e-13 seq455 89.7 1e-12 seq93 86.0 1e-11 >seq30 Length=14751797 Score = 102 bits (112), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || | | ||| | |||| ||| || || || || ||||| Sbjct 13753796 ACCACCACAAAGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGA 13753737 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| | | |||| |||| ||| |||||||||||||||| ||| || |||| || || Sbjct 13753736 TAAA-TACACCCATCTTCCATTTGCTTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGG 13753678 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||| ||| ||||||| || || ||||||||| ||||| ||| | ||| || Sbjct 13753677 AATTCTTTCCTTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAGTGGTTCAAC 13753618 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || ||| | | |||||||| || |||||||| Sbjct 13753617 CTCAAGCATGATGGTCTTCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570 >seq6 Length=30479472 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || | | |||| |||| ||| |||||||||||||| | ||| || |||||| Sbjct 3763701 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 3763642 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||| |||| | ||| || || | | Sbjct 3763641 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGT 3763582 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || |||| || || || || | ||||| || || |||||||| Sbjct 3763581 TCAGCCTCCAGCGTAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 >seq26 Length=15501076 Score = 91.5 bits (100), Expect = 3e-13 Identities = 167/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 192293 tttttAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352 ||||| ||| || |||||| |||| | | || | ||| || || | ||| || Sbjct 10001799 TTTTTTTTTTTCTAGCACCACCATTAAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCT 10001858 Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 || || || ||||| || ||| ||| |||| ||| ||| |||||||||||| || Sbjct 10001859 GAATGTTGTAGTCAGACTCAGTACGTCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTC 10001918 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 | || |||| ||| || |||||||| ||||| || || || |||||||| ||||| Sbjct 10001919 TTTGATGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAG 10001978 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 |||| | ||| || || | ||||| || || | || | ||||| | || |||| Sbjct 10001979 TATCT---GGTTCAACCTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCT 10002035 Query 192533 GCAT 192536 |||| Sbjct 10002036 GCAT 10002039 >seq455 Length=570085 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || ||| |||| || | ||| |||||||||||||| | || Sbjct 193640 ATGTTGTAGTCAGACAAGGTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTT 193581 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || |||||||| |||| || || || ||||| ||| ||||| Sbjct 193580 TGCTGATCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCTTTTATATTTTCTATAG-- 193523 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 | | | ||| || | |||||||| || || || ||| | ||| || || |||||| Sbjct 193522 --TAAAGGTTCAACCTTGAGAGTAATAGTCTT-CCCCATAAGGGTTTTATGAAAATCTGC 193466 Query 192535 AT 192536 || Sbjct 193465 AT 193464 >seq93 Length=7280091 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 192377 GTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTT 192436 || |||| |||| ||| |||||||||||||| | |||||| |||||||| || | ||||| Sbjct 3503791 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTT 3503733 Query 192437 CTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAG 192496 | ||||| || || || |||||||| ||||| || || | ||| || || || | Sbjct 3503732 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGA-GGTTCAACCTCGAGCG 3503674 Query 192497 TAATGGTTTTACCA 192510 |||| || || ||| Sbjct 3503673 TAATAGTCTTCCCA 3503660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984322543807050