Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq30 102 2e-16
seq6 100 6e-16
seq26 91.5 3e-13
seq455 89.7 1e-12
seq93 86.0 1e-11
>seq30
Length=14751797
Score = 102 bits (112), Expect = 2e-16
Identities = 160/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| | || | | ||| | |||| ||| || || || || |||||
Sbjct 13753796 ACCACCACAAAGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGA 13753737
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| | | |||| |||| ||| |||||||||||||||| ||| || |||| || ||
Sbjct 13753736 TAAA-TACACCCATCTTCCATTTGCTTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGG 13753678
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||| ||| ||||||| || || ||||||||| ||||| ||| | ||| ||
Sbjct 13753677 AATTCTTTCCTTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAGTGGTTCAAC 13753618
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||||| || ||| | | |||||||| || ||||||||
Sbjct 13753617 CTCAAGCATGATGGTCTTCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570
>seq6
Length=30479472
Score = 100 bits (110), Expect = 6e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
||||| || || | | |||| |||| ||| |||||||||||||| | ||| || ||||||
Sbjct 3763701 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 3763642
Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483
|| || |||||||| ||||| || || || |||| |||| | ||| || || | |
Sbjct 3763641 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGT 3763582
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | || || |||| || || || || | ||||| || || ||||||||
Sbjct 3763581 TCAGCCTCCAGCGTAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
>seq26
Length=15501076
Score = 91.5 bits (100), Expect = 3e-13
Identities = 167/244 (68%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 192293 tttttAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352
||||| ||| || |||||| |||| | | || | ||| || || | ||| ||
Sbjct 10001799 TTTTTTTTTTTCTAGCACCACCATTAAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCT 10001858
Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412
|| || || ||||| || ||| ||| |||| ||| ||| |||||||||||| ||
Sbjct 10001859 GAATGTTGTAGTCAGACTCAGTACGTCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTC 10001918
Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472
| || |||| ||| || |||||||| ||||| || || || |||||||| |||||
Sbjct 10001919 TTTGATGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAG 10001978
Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532
|||| | ||| || || | ||||| || || | || | ||||| | || ||||
Sbjct 10001979 TATCT---GGTTCAACCTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCT 10002035
Query 192533 GCAT 192536
||||
Sbjct 10002036 GCAT 10002039
>seq455
Length=570085
Score = 89.7 bits (98), Expect = 1e-12
Identities = 130/182 (71%), Gaps = 5/182 (3%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || ||||| || || ||| |||| || | ||| |||||||||||||| | ||
Sbjct 193640 ATGTTGTAGTCAGACAAGGTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTT 193581
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| |||||||| || |||||||| |||| || || || ||||| ||| |||||
Sbjct 193580 TGCTGATCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCTTTTATATTTTCTATAG-- 193523
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
| | | ||| || | |||||||| || || || ||| | ||| || || ||||||
Sbjct 193522 --TAAAGGTTCAACCTTGAGAGTAATAGTCTT-CCCCATAAGGGTTTTATGAAAATCTGC 193466
Query 192535 AT 192536
||
Sbjct 193465 AT 193464
>seq93
Length=7280091
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 192377 GTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTT 192436
|| |||| |||| ||| |||||||||||||| | |||||| |||||||| || | |||||
Sbjct 3503791 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTT 3503733
Query 192437 CTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAG 192496
| ||||| || || || |||||||| ||||| || || | ||| || || || |
Sbjct 3503732 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGA-GGTTCAACCTCGAGCG 3503674
Query 192497 TAATGGTTTTACCA 192510
|||| || || |||
Sbjct 3503673 TAATAGTCTTCCCA 3503660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984322543807050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |