Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq30 104 4e-17 seq6 91.5 3e-13 seq26 87.8 3e-12 >seq30 Length=14751797 Score = 104 bits (114), Expect = 4e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||| | || | | ||| | |||| ||| || ||| || Sbjct 13753805 TTTCTTAGCACCACCACAAAGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTT 13753746 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||||| | | | || |||| ||| ||||||||||| |||| ||| || || Sbjct 13753745 GTAGTCAGATAAATA-CACCCATCTTCCATTTGCTTACCAGCAAAGATTAGTCTTTGCTG 13753687 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 | || || |||| ||| ||||||| || || ||||||||| ||||||||| Sbjct 13753686 ATTGGGAGGAATTCTTTCCTTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAG 13753627 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || | ||||| || ||| | | ||||||||||| |||||||| Sbjct 13753626 TGGTTCAACCTCAAGCATGATGGTCTTCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570 >seq6 Length=30479472 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| | | | || |||| ||| ||||||||||| || | ||| || || ||| Sbjct 3763701 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 3763642 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| ||||| || || || |||| |||| | |||| || || | | Sbjct 3763641 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGT 3763582 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || |||| || || || || | ||||| ||||| |||||||| Sbjct 3763581 TCAGCCTCCAGCGTAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 >seq26 Length=15501076 Score = 87.8 bits (96), Expect = 3e-12 Identities = 167/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||| |||| || |||||| |||| | | || | ||| || || | ||| || Sbjct 10001800 TTTTTTTTTTC-TAGCACCACCATTAAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCT 10001858 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 ||| || || || || || ||| || |||| ||| ||| ||||||| |||| || Sbjct 10001859 GAATGTTGTAGTCAGACTCAGTACGTCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTC 10001918 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 | || || | ||| || |||||||| ||||| || || || |||||||| ||||| Sbjct 10001919 TTTGATGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAG 10001978 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 ||||| | ||| || || | ||||| || || | || | ||||| | ||| |||| Sbjct 10001979 TATCT---GGTTCAACCTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCT 10002035 Query 172066 GCAT 172069 |||| Sbjct 10002036 GCAT 10002039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904994764841400