Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq30 104 4e-17
seq6 91.5 3e-13
seq26 87.8 3e-12
>seq30
Length=14751797
Score = 104 bits (114), Expect = 4e-17
Identities = 166/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||| | || | | ||| | |||| ||| || ||| ||
Sbjct 13753805 TTTCTTAGCACCACCACAAAGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTT 13753746
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || |||||| | | | || |||| ||| ||||||||||| |||| ||| || ||
Sbjct 13753745 GTAGTCAGATAAATA-CACCCATCTTCCATTTGCTTACCAGCAAAGATTAGTCTTTGCTG 13753687
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
| || || |||| ||| ||||||| || || ||||||||| |||||||||
Sbjct 13753686 ATTGGGAGGAATTCTTTCCTTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAG 13753627
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||| || || || | ||||| || ||| | | ||||||||||| ||||||||
Sbjct 13753626 TGGTTCAACCTCAAGCATGATGGTCTTCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570
>seq6
Length=30479472
Score = 91.5 bits (100), Expect = 3e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || |||| | | | || |||| ||| ||||||||||| || | ||| || || |||
Sbjct 3763701 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 3763642
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || |||||||| ||||| || || || |||| |||| | |||| || || | |
Sbjct 3763641 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGT 3763582
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || |||| || || || || | ||||| ||||| ||||||||
Sbjct 3763581 TCAGCCTCCAGCGTAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
>seq26
Length=15501076
Score = 87.8 bits (96), Expect = 3e-12
Identities = 167/244 (68%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885
||||| |||| || |||||| |||| | | || | ||| || || | ||| ||
Sbjct 10001800 TTTTTTTTTTC-TAGCACCACCATTAAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCT 10001858
Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945
||| || || || || || ||| || |||| ||| ||| ||||||| |||| ||
Sbjct 10001859 GAATGTTGTAGTCAGACTCAGTACGTCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTC 10001918
Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005
| || || | ||| || |||||||| ||||| || || || |||||||| |||||
Sbjct 10001919 TTTGATGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAG 10001978
Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065
||||| | ||| || || | ||||| || || | || | ||||| | ||| ||||
Sbjct 10001979 TATCT---GGTTCAACCTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCT 10002035
Query 172066 GCAT 172069
||||
Sbjct 10002036 GCAT 10002039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904994764841400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |