Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq73 122 8e-23 seq126 113 4e-20 seq90 91.5 1e-13 seq93 82.4 7e-11 >seq14 Length=21378024 Score = 127 bits (140), Expect = 2e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 6329730 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 6329789 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || || |||||||| || || || || || ||||| Sbjct 6329790 TGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCA 6329849 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || ||||||||||||||| | | | |||||||| || Sbjct 6329850 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAA 6329909 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || || || || || || ||||||||| | || |||| || ||| | |||||| Sbjct 6329910 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCATTGAGCC 6329969 >seq73 Length=8706776 Score = 122 bits (134), Expect = 8e-23 Identities = 123/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| || || ||||| || || || || ||||||| |||| |||| ||| || Sbjct 2651544 ACGATGCAGATTTTCATAAAAACCCTTACGGGGAAGACTATTA-GCTCAAAGTTGAACCC 2651602 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||| Sbjct 2651603 TCGGACACTATAGAAAATATAAAAGCCAAGATCCAGGATAACGAAGGAATTCCTCCTGAT 2651662 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 |||| | | |||||| |||| || || || ||||| ||| Sbjct 2651663 CAACCAAGATTGATCGTTGCTGGTAAGCAACTGGAAGAT 2651701 >seq126 Length=5838822 Score = 113 bits (124), Expect = 4e-20 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || || || || || || ||||| || || ||| Sbjct 680737 GATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 680796 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || || |||||||| || || || || || ||||| Sbjct 680797 TGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCA 680856 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 || ||| | || ||||| || |||||||||||||| | | | || | |||||||| | Sbjct 680857 GCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGA-TGGCCACACTCTCTCAGATTACA 680915 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941 ||| || || || || || || ||||||||| | || |||| || ||| | ||||| Sbjct 680916 GCATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCATTGAGC 680975 Query 24942 C 24942 | Sbjct 680976 C 680976 >seq90 Length=7592057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || || || || || | ||||||||||||| || Sbjct 464004 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAG 464063 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | | |||| || || || || || |||||||| || || || Sbjct 464064 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAATATCCAGAAGGAATCCACTCTGCAT 464123 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||| ||| | || || Sbjct 464124 TTGGTCCTGCGCTTGAGGGGGGG 464146 >seq93 Length=7280091 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || || |||||||||||||| || ||| || | ||| | |||||| ||||| ||| Sbjct 3503661 GGGAAGACTATTACGCTCGAGGTTGAA-CCTCGGACCCTATAGAAAATGTAAAGGCCAAG 3503719 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| || || ||||| || ||||| ||||| || | |||||||||| || || || Sbjct 3503720 ATCCAGGATAAGGAAGG-ATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGTAAGCAA 3503778 Query 24851 CTGGAGGAT 24859 ||||| ||| Sbjct 3503779 CTGGAAGAT 3503787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449827399103240