Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq14 127 2e-24
seq73 122 8e-23
seq126 113 4e-20
seq90 91.5 1e-13
seq93 82.4 7e-11
>seq14
Length=21378024
Score = 127 bits (140), Expect = 2e-24
Identities = 172/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || || || || || || || ||||| || || |||
Sbjct 6329730 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 6329789
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || ||| || || |||||||| || || || || || |||||
Sbjct 6329790 TGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCA 6329849
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| |||| ||||| || ||||||||||||||| | | | |||||||| ||
Sbjct 6329850 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAA 6329909
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942
||| || || || || || || ||||||||| | || |||| || ||| | ||||||
Sbjct 6329910 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCATTGAGCC 6329969
>seq73
Length=8706776
Score = 122 bits (134), Expect = 8e-23
Identities = 123/159 (77%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
||||||||||| || || ||||| || || || || ||||||| |||| |||| ||| ||
Sbjct 2651544 ACGATGCAGATTTTCATAAAAACCCTTACGGGGAAGACTATTA-GCTCAAAGTTGAACCC 2651602
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| |||||| ||||| |||||||| || || |||||||| ||||| |||
Sbjct 2651603 TCGGACACTATAGAAAATATAAAAGCCAAGATCCAGGATAACGAAGGAATTCCTCCTGAT 2651662
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|||| | | |||||| |||| || || || ||||| |||
Sbjct 2651663 CAACCAAGATTGATCGTTGCTGGTAAGCAACTGGAAGAT 2651701
>seq126
Length=5838822
Score = 113 bits (124), Expect = 4e-20
Identities = 171/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || | || || || || || || ||||| || || |||
Sbjct 680737 GATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 680796
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || ||| || || |||||||| || || || || || |||||
Sbjct 680797 TGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCA 680856
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881
|| ||| | || ||||| || |||||||||||||| | | | || | |||||||| |
Sbjct 680857 GCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGA-TGGCCACACTCTCTCAGATTACA 680915
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941
||| || || || || || || ||||||||| | || |||| || ||| | |||||
Sbjct 680916 GCATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCATTGAGC 680975
Query 24942 C 24942
|
Sbjct 680976 C 680976
>seq90
Length=7592057
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || || || || || || | ||||||||||||| ||
Sbjct 464004 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAG 464063
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|||||||| ||| | | | | |||| || || || || || |||||||| || || ||
Sbjct 464064 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAATATCCAGAAGGAATCCACTCTGCAT 464123
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||| ||| | || ||
Sbjct 464124 TTGGTCCTGCGCTTGAGGGGGGG 464146
>seq93
Length=7280091
Score = 82.4 bits (90), Expect = 7e-11
Identities = 97/129 (75%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790
|| || |||||||||||||| || ||| || | ||| | |||||| ||||| |||
Sbjct 3503661 GGGAAGACTATTACGCTCGAGGTTGAA-CCTCGGACCCTATAGAAAATGTAAAGGCCAAG 3503719
Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850
||||| || || ||||| || ||||| ||||| || | |||||||||| || || ||
Sbjct 3503720 ATCCAGGATAAGGAAGG-ATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGTAAGCAA 3503778
Query 24851 CTGGAGGAT 24859
||||| |||
Sbjct 3503779 CTGGAAGAT 3503787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449827399103240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |