Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq14 129 4e-25
seq126 111 1e-19
seq90 111 1e-19
seq13 102 5e-17
seq1607 95.1 8e-15
>seq14
Length=21378024
Score = 129 bits (142), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||| ||| ||||| ||||| || || || || |||| ||||
Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || || || ||||| || ||||| || | || | |||||||||||
Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| |||||| || || || | ||| ||| ||| || || | ||| ||||
Sbjct 6329822 TGAATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGG 6329765
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||||| |||||||| ||||||||||||||
Sbjct 6329764 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 111 bits (122), Expect = 1e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||| ||| ||||| ||| | || || || || || | ||||
Sbjct 680949 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCC 680890
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || || || || || || ||||| || | || | |||||||||||
Sbjct 680889 TCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 680830
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| |||||| || || || | ||| ||| ||| || || | ||| ||||
Sbjct 680829 TGAATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGG 680772
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||||| | |||||| ||||||||||||||
Sbjct 680771 TCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq90
Length=7592057
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| |||||||| | |||||||| || | ||| |||||||| || || ||||| ||
Sbjct 464146 CCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 464087
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||||| |||| ||||| ||||||||||| |||||||| | ||||||||| | ||
Sbjct 464086 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 464027
Query 34871 ACCCCCTCCTTGTC 34884
| |||||||||||
Sbjct 464026 ATGCCCTCCTTGTC 464013
>seq13
Length=21495731
Score = 102 bits (112), Expect = 5e-17
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| ||||| ||||| || || || || |||| ||||| || || || || || || ||
Sbjct 9191893 CTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTACCTGCAAA 9191834
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| | ||||| || | || | ||||||| ||| | | |||| |||||| |
Sbjct 9191833 TATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCTTTGAC--A 9191776
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | ||| ||| |||||| || | ||| |||||||| || | ||||||||
Sbjct 9191775 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGTCTTC 9191716
Query 34964 ACAAAGATCTGCAT 34977
||||||||||| ||
Sbjct 9191715 ACAAAGATCTGAAT 9191702
>seq1607
Length=19272
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 7/229 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||| ||| |||||||| ||| | ||| |||||||| ||| | ||||| ||
Sbjct 6405 CCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 6346
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||| |||| ||||| || || || ||||||| | ||| |||| | ||
Sbjct 6345 AGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGGG 6286
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGA 34928
| | ||||| | | || ||| ||||| || || | || ||| ||| ||| |
Sbjct 6285 ATGTCTTCCTTTTGG---ATCTTTGCCTTGAC--ATTCTCAGTGGAGTCACTGGGCTCCA 6231
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| ||||| |||||||| || |||||||||||
Sbjct 6230 CCTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325643250216977
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |