Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14 129 4e-25 seq126 111 1e-19 seq90 111 1e-19 seq13 102 5e-17 seq1607 95.1 8e-15 >seq14 Length=21378024 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| ||||| || || || || |||| |||| Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || || ||||| || ||||| || | || | ||||||||||| Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| ||| ||| || || | ||| |||| Sbjct 6329822 TGAATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGG 6329765 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||| |||||||| |||||||||||||| Sbjct 6329764 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| ||| | || || || || || | |||| Sbjct 680949 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCC 680890 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || || || || || ||||| || | || | ||||||||||| Sbjct 680889 TCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 680830 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| ||| ||| || || | ||| |||| Sbjct 680829 TGAATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGG 680772 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||| | |||||| |||||||||||||| Sbjct 680771 TCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq90 Length=7592057 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | |||||||| || | ||| |||||||| || || ||||| || Sbjct 464146 CCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 464087 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||||||||| |||||||| | ||||||||| | || Sbjct 464086 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 464027 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 464026 ATGCCCTCCTTGTC 464013 >seq13 Length=21495731 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| || || || || |||| ||||| || || || || || || || Sbjct 9191893 CTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTACCTGCAAA 9191834 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | ||||| || | || | ||||||| ||| | | |||| |||||| | Sbjct 9191833 TATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCTTTGAC--A 9191776 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| ||| |||||| || | ||| |||||||| || | |||||||| Sbjct 9191775 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGTCTTC 9191716 Query 34964 ACAAAGATCTGCAT 34977 ||||||||||| || Sbjct 9191715 ACAAAGATCTGAAT 9191702 >seq1607 Length=19272 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||| ||| |||||||| ||| | ||| |||||||| ||| | ||||| || Sbjct 6405 CCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 6346 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||| |||| ||||| || || || ||||||| | ||| |||| | || Sbjct 6345 AGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGGG 6286 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGA 34928 | | ||||| | | || ||| ||||| || || | || ||| ||| ||| | Sbjct 6285 ATGTCTTCCTTTTGG---ATCTTTGCCTTGAC--ATTCTCAGTGGAGTCACTGGGCTCCA 6231 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| ||||| |||||||| || ||||||||||| Sbjct 6230 CCTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325643250216977