Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq455 91.5 1e-13
seq6 87.8 1e-12
>seq455
Length=570085
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/213 (70%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
||| || | |||||| ||||| || || | |||||| || || | | ||| || |||
Sbjct 193671 CAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATC 193612
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| || |||||| | |||| ||||||||||| || ||||| || || || |
Sbjct 193611 TTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATT 193552
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || ||| | | |||||| ||| || |||| || | ||||| |||||
Sbjct 193551 CTGGATCTTGGCTTTTATATTTTCTATAGT----AAAGGTTCAACCTTGAGAGTAATAGT 193496
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || | | ||||||| ||| ||||||||
Sbjct 193495 CTTCCCCATAAGGGTTTTATGAAA-ATCTGCAT 193464
>seq6
Length=30479472
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
||||| | |||| | ||||| || || |||||| | | || | | || | |||
Sbjct 3763741 CAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATC 3763682
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| || |||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 3763681 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3763622
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || ||| || ||||| |||||| || |||| | || || || | |||
Sbjct 3763621 CTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAACAGT 3763562
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | |||||| | || ||||||||
Sbjct 3763561 CTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385160594075103
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |