Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq455 91.5 1e-13 seq6 87.8 1e-12 >seq455 Length=570085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| || | |||||| ||||| || || | |||||| || || | | ||| || ||| Sbjct 193671 CAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATC 193612 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| ||||||||||| || ||||| || || || | Sbjct 193611 TTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATT 193552 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| | | |||||| ||| || |||| || | ||||| ||||| Sbjct 193551 CTGGATCTTGGCTTTTATATTTTCTATAGT----AAAGGTTCAACCTTGAGAGTAATAGT 193496 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | | ||||||| ||| |||||||| Sbjct 193495 CTTCCCCATAAGGGTTTTATGAAA-ATCTGCAT 193464 >seq6 Length=30479472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||| | |||| | ||||| || || |||||| | | || | | || | ||| Sbjct 3763741 CAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATC 3763682 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| |||||||||||| || ||||| || || || || Sbjct 3763681 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3763622 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| || ||||| |||||| || |||| | || || || | ||| Sbjct 3763621 CTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAACAGT 3763562 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | |||||| | || |||||||| Sbjct 3763561 CTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385160594075103