Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq314 127 2e-24 seq438 113 4e-20 >seq314 Length=1649698 Score = 127 bits (140), Expect = 2e-24 Identities = 402/616 (65%), Gaps = 13/616 (2%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||||| ||| ||| |||||||| ||| | ||| |||| | |||| | | || | Sbjct 824079 ATGCCTTTTATGTCGCAGACCTTGGAGACATTCTAAAGAAACATCTAAGATAGTTAAAAG 824020 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| | || | || ||||| || || || | | ||| | ||| | | | Sbjct 824019 CTCTTCCTCATGTTACCCCCTTTTATGCAGTCAAATGCAATGAAAGCAGAGCCA-TAATG 823961 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||| |||||||| || | | || ||||||||||| || ||| || || ||||| Sbjct 823960 AAGACCTTAGCTGCCATTGAGTCAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 823901 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| |||| | |||| ||||| | | ||| |||| ||||||||| Sbjct 823900 GTGCAGAGTCTCCGAGTGCCTCCAGAGAGGATTATCTATGCAAATCTTTGTAAGCATGTG 823841 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | ||||| || | |||||| ||||||||||||| ||||||| Sbjct 823840 TCTCAAATTAAATATGCTGCCAGTATTGGAGTCCAAATGATGACTTTTGACAGTGAAGTT 823781 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | || ||| | || | | || ||| |||| || ||||| Sbjct 823780 GAGTTGATGAAGGTTGCCAGAGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCTACT 823721 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| | || ||| | | || ||||| || || || || | | || ||||| Sbjct 823720 GATGATTTCAAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACACTCAAAACCAGC 823661 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 || | | ||| || ||| ||||| | || || || || ||||| || ||| Sbjct 823660 AGACTTCCTTTGGAACGAGCGAAAGAATTAAATATTGATGTCATTGGTGTCAGTTTTCAC 823601 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGC--TTACAGAAAAGCCATAGCTGAGGCCAGGA 20741 ||||| |||||||||| ||| | || | | ||| ||||| |||| ||| | Sbjct 823600 GTGGGGAGTGGCTGCACTGATCCTGAGACCTGTGCAG----GCCATCTCTGATGCCCGCT 823545 Query 20742 GAGCTTTTGACTTTGGCACGCTGATG--GGCTTTGACATGTACCTCTTGGATATTGGTGG 20799 | | |||||| | || ||||| | || || ||||| || ||||||||||||| Sbjct 823544 GTGTCTTTGACATGGG--AGCTGAGGCTGGTTTCAGCATGTGTCTGCTGGATATTGGTGG 823487 Query 20800 CGGCTTTCCCGGGATC 20815 ||| ||||| ||||| Sbjct 823486 TGGC-TTCCCTGGATC 823472 >seq438 Length=679998 Score = 113 bits (124), Expect = 4e-20 Identities = 328/498 (66%), Gaps = 13/498 (3%) Strand=Plus/Plus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||| |||||||| || || || ||||||||||| || ||| || || ||||| Sbjct 73875 AAGACCTTAGCTGCCATTGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 73934 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| ||| | |||| ||||| | | ||| ||||||||||||||| Sbjct 73935 GTGCAGAGTCTCCAAGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAGCAGGTG 73994 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | ||||| || | |||||| ||||||||||||| ||||||| Sbjct 73995 TCTCAAATTAAATATGCTGCCAGTATTGGAGTCCAAATGATGACTTTTGACAGTGAAGTT 74054 Query 20504 GAGCTTACCAAAATTGATCGCCTGCAC-CAT---GATGCTAAGCTGGTACTGAGGATTAA 20559 || | | || | | ||| | || ||| | || ||| |||| || ||||| Sbjct 74055 AAGTTGATGAA----GGTTGCCAGAACACATCCAAAGGCAAAGTTGGTTTTGCGGATTGC 74110 Query 20560 AGTGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGC 20619 ||||| || || ||| | | || ||||| || || || || | | || | Sbjct 74111 TACTGATGATTCCAAAGCAGTCTGTTGTCTCAGTGTTAAATTCGGTGCCACACTCAAAAC 74170 Query 20620 CAGCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTT 20679 |||| || || | || || ||| ||||| | || || || || |||||||| Sbjct 74171 CAGCAGACTTCTTTTGGAATGAGCTAAAGAATTAAATATTGATGTTATTGGTGTCAGCTT 74230 Query 20680 CCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAG 20739 |||||||| |||||||||| ||| | || | | | | ||||| |||| ||| | Sbjct 74231 TCACGTGGGGAGTGGCTGCACTGATCCTGAGACCTTCGTGCAGGCCATCTCTGATGCCTG 74290 Query 20740 GAGAGCTTTTGACTTTGGCACGCTGATG--GGCTTTGACATGTACCTCTTGGATATTGGT 20797 | | | || | | ||| | ||||| | || || ||||| || ||||||||||| Sbjct 74291 CTGTG-TCTTTAATATGGGA-GCTGAGGCTGGTTTCACCATGTGTCTGCTGGATATTGGT 74348 Query 20798 GGCGGCTTTCCCGGGATC 20815 || ||| ||||| ||||| Sbjct 74349 GGTGGC-TTCCCTGGATC 74365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463473269503440