Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq314 127 2e-24
seq438 113 4e-20
>seq314
Length=1649698
Score = 127 bits (140), Expect = 2e-24
Identities = 402/616 (65%), Gaps = 13/616 (2%)
Strand=Plus/Minus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||||| ||| ||| |||||||| ||| | ||| |||| | |||| | | || |
Sbjct 824079 ATGCCTTTTATGTCGCAGACCTTGGAGACATTCTAAAGAAACATCTAAGATAGTTAAAAG 824020
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323
|| | ||| | || | || ||||| || || || | | ||| | ||| | | |
Sbjct 824019 CTCTTCCTCATGTTACCCCCTTTTATGCAGTCAAATGCAATGAAAGCAGAGCCA-TAATG 823961
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
|||||| |||||||| || | | || ||||||||||| || ||| || || |||||
Sbjct 823960 AAGACCTTAGCTGCCATTGAGTCAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 823901
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
|||| | ||| |||| | |||| ||||| | | ||| |||| |||||||||
Sbjct 823900 GTGCAGAGTCTCCGAGTGCCTCCAGAGAGGATTATCTATGCAAATCTTTGTAAGCATGTG 823841
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
|| || || | ||||| || | |||||| ||||||||||||| |||||||
Sbjct 823840 TCTCAAATTAAATATGCTGCCAGTATTGGAGTCCAAATGATGACTTTTGACAGTGAAGTT 823781
Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563
||| | | || ||| | || | | || ||| |||| || |||||
Sbjct 823780 GAGTTGATGAAGGTTGCCAGAGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCTACT 823721
Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623
||||| | || ||| | | || ||||| || || || || | | || |||||
Sbjct 823720 GATGATTTCAAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACACTCAAAACCAGC 823661
Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683
|| | | ||| || ||| ||||| | || || || || ||||| || |||
Sbjct 823660 AGACTTCCTTTGGAACGAGCGAAAGAATTAAATATTGATGTCATTGGTGTCAGTTTTCAC 823601
Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGC--TTACAGAAAAGCCATAGCTGAGGCCAGGA 20741
||||| |||||||||| ||| | || | | ||| ||||| |||| ||| |
Sbjct 823600 GTGGGGAGTGGCTGCACTGATCCTGAGACCTGTGCAG----GCCATCTCTGATGCCCGCT 823545
Query 20742 GAGCTTTTGACTTTGGCACGCTGATG--GGCTTTGACATGTACCTCTTGGATATTGGTGG 20799
| | |||||| | || ||||| | || || ||||| || |||||||||||||
Sbjct 823544 GTGTCTTTGACATGGG--AGCTGAGGCTGGTTTCAGCATGTGTCTGCTGGATATTGGTGG 823487
Query 20800 CGGCTTTCCCGGGATC 20815
||| ||||| |||||
Sbjct 823486 TGGC-TTCCCTGGATC 823472
>seq438
Length=679998
Score = 113 bits (124), Expect = 4e-20
Identities = 328/498 (66%), Gaps = 13/498 (3%)
Strand=Plus/Plus
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
|||||| |||||||| || || || ||||||||||| || ||| || || |||||
Sbjct 73875 AAGACCTTAGCTGCCATTGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 73934
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
|||| | ||| ||| | |||| ||||| | | ||| |||||||||||||||
Sbjct 73935 GTGCAGAGTCTCCAAGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAGCAGGTG 73994
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
|| || || | ||||| || | |||||| ||||||||||||| |||||||
Sbjct 73995 TCTCAAATTAAATATGCTGCCAGTATTGGAGTCCAAATGATGACTTTTGACAGTGAAGTT 74054
Query 20504 GAGCTTACCAAAATTGATCGCCTGCAC-CAT---GATGCTAAGCTGGTACTGAGGATTAA 20559
|| | | || | | ||| | || ||| | || ||| |||| || |||||
Sbjct 74055 AAGTTGATGAA----GGTTGCCAGAACACATCCAAAGGCAAAGTTGGTTTTGCGGATTGC 74110
Query 20560 AGTGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGC 20619
||||| || || ||| | | || ||||| || || || || | | || |
Sbjct 74111 TACTGATGATTCCAAAGCAGTCTGTTGTCTCAGTGTTAAATTCGGTGCCACACTCAAAAC 74170
Query 20620 CAGCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTT 20679
|||| || || | || || ||| ||||| | || || || || ||||||||
Sbjct 74171 CAGCAGACTTCTTTTGGAATGAGCTAAAGAATTAAATATTGATGTTATTGGTGTCAGCTT 74230
Query 20680 CCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAG 20739
|||||||| |||||||||| ||| | || | | | | ||||| |||| ||| |
Sbjct 74231 TCACGTGGGGAGTGGCTGCACTGATCCTGAGACCTTCGTGCAGGCCATCTCTGATGCCTG 74290
Query 20740 GAGAGCTTTTGACTTTGGCACGCTGATG--GGCTTTGACATGTACCTCTTGGATATTGGT 20797
| | | || | | ||| | ||||| | || || ||||| || |||||||||||
Sbjct 74291 CTGTG-TCTTTAATATGGGA-GCTGAGGCTGGTTTCACCATGTGTCTGCTGGATATTGGT 74348
Query 20798 GGCGGCTTTCCCGGGATC 20815
|| ||| ||||| |||||
Sbjct 74349 GGTGGC-TTCCCTGGATC 74365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463473269503440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |