Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq30 138 2e-27 seq26 138 2e-27 seq739 125 1e-23 seq6 125 1e-23 seq455 123 5e-23 seq1607 116 7e-21 seq3 111 3e-19 seq93 98.7 2e-15 seq42 84.2 4e-11 >seq30 Length=14751797 Score = 138 bits (152), Expect = 2e-27 Identities = 153/203 (75%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || ||||| || || || ||||||| ||| | || ||||| | ||| Sbjct 13753771 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATA-AATACACCCATCTTCCATTTGC 13753713 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||||||||||||| |||| ||||| |||| ||||||||||| ||||| Sbjct 13753712 TTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGGAATTCTTTCCTTATCTTAGATCTTG 13753653 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || ||||| ||||| || || | | || ||||| || | Sbjct 13753652 GCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAGCATGATGGTCTTCCCAATA 13753593 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || | || |||||||| Sbjct 13753592 AGGGTTTTAATGAAAATCTGCAT 13753570 >seq26 Length=15501076 Score = 138 bits (152), Expect = 2e-27 Identities = 149/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || || ||||| | | | | ||||| ||||| || || Sbjct 10001846 GTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGTCAATCTTCCAGTTGCTTATCA 10001905 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||||||||||||||| |||| ||||| |||||||||||||| || ||||| || ||| Sbjct 10001906 GCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 10001965 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 |||||||| || ||||| ||||| || |||| || || ||||| |||| | || Sbjct 10001966 ACATTTTCTATAGTATC---TGGTTCAACCTCCATTGTAATAGTCTTCTCTGTAAGGGTT 10002022 Query 82794 TTTACAAATATCTGCAT 82810 ||||| || |||||||| Sbjct 10002023 TTTACGAAAATCTGCAT 10002039 >seq739 Length=148672 Score = 125 bits (138), Expect = 1e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| ||| ||||| || ||||||||||| ||||| ||||| || | || ||||| Sbjct 36644 ACCTCCTCACAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGA 36585 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || |||| || ||| |||||| |||| | || || ||| || || Sbjct 36584 GAGGGTGCACCCCTCTTTCAGAATTTTGCCAGCATAGATCAACCTGTGCCGATTAGGGGG 36525 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||||| ||| |||||||| || ||||| ||| | || ||| | || || || Sbjct 36524 GATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCAC 36468 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| | || |||||||| Sbjct 36467 CTCTAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATCAAGATCTGCAT 36420 >seq6 Length=30479472 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || | | ||||| | | | | || ||||| ||||| || ||| Sbjct 3763725 GTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATCTTCCAGTTGCTTACCA 3763666 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| |||||||| ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 3763665 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTT 3763606 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||| | || || ||||| | |||| || | ||||| ||||| | || Sbjct 3763605 GCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAACAGTCTTCCCTGTAAGGGTT 3763546 Query 82794 TTTACAAATATCTGCAT 82810 |||| || |||||||| Sbjct 3763545 TTTATGAAAATCTGCAT 3763529 >seq455 Length=570085 Score = 123 bits (136), Expect = 5e-23 Identities = 156/213 (73%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 |||||| | || || || || || |||| || || || ||||| | | | || || Sbjct 193671 CAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATC 193612 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||||||||| || ||||||||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 193611 TTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATT 193552 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| ||||||| |||||| || ||| |||||| || | | ||| || || Sbjct 193551 CTGGATCTTGGCTTTTATATTTTCTATAGTA----AAGGTTCAACCTTGAGAGTAATAGT 193496 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || | || | |||| || |||||||| Sbjct 193495 CTTCCCCAT-AAGGGTTTTATGAAAATCTGCAT 193464 >seq1607 Length=19272 Score = 116 bits (128), Expect = 7e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | ||| |||| || ||||||||||| ||||| ||||| || | || ||||| Sbjct 6406 ACCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGA 6347 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | | | ||||| || ||| ||||||||||| | || || | || || || Sbjct 6346 GAGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGG 6287 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||||| ||| |||||||| || ||||| ||| | | ||| | || || || Sbjct 6286 GATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGAGTCACTGGGCTCCAC 6230 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || |||| ||||| || || |||||||| Sbjct 6229 CTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182 >seq3 Length=41493964 Score = 111 bits (122), Expect = 3e-19 Identities = 206/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 50686 ACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCC 50745 |||||| ||| |||||||| || ||| | |||| || ||||||| |||||| Sbjct 8287236 ACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCT 8287295 Query 50746 TTGGATACATTAAA-TTGTGTAGAACCGAAATTAAATAATAGAACACTTACGTTACCTCT 50804 || ||| | ||| || | | | || |||||||| || | ||||| | || ||||| Sbjct 8287296 TTTTTTACTTCAAACTTCTCTTTA-CCAAAATTAAACAACACAACACCAATATTTCCTCT 8287354 Query 50805 ATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGA 50864 ||| ||| || || |||||||| ||||| ||||| || || || ||| || || || Sbjct 8287355 ATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGA 8287414 Query 50865 TCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTATATCTGTTTTTAT 50924 | ||||||||||| || ||| | ||| ||| | ||| || |||||||| | Sbjct 8287415 ACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCAC 8287474 Query 50925 TAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGC 50984 | | || ||||||||| || || ||||||||| || || || | ||| || || || Sbjct 8287475 AAGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGC 8287534 >seq93 Length=7280091 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| ||||| || ||||| ||||| | ||||||| Sbjct 3503789 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTTCC 3503731 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || | || |||||| || || | || Sbjct 3503730 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAGCGTA 3503672 Query 82773 ATCGTCTTGCC 82783 || ||||| || Sbjct 3503671 ATAGTCTTCCC 3503661 >seq42 Length=12273399 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||||||||| ||| |||||||||| |||||||| |||||||| | || ||||| Sbjct 10271147 AGCGTTTTTCGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATGG 10271206 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | | || | ||| || | || | |||||| | |||||||| || || || || || Sbjct 10271207 GTTAACCGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTAACCAT 10271266 Query 60430 AATGCA 60435 |||| Sbjct 10271267 GTTGCA 10271272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981670168091737