Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq30 138 2e-27
seq26 138 2e-27
seq739 125 1e-23
seq6 125 1e-23
seq455 123 5e-23
seq1607 116 7e-21
seq3 111 3e-19
seq93 98.7 2e-15
seq42 84.2 4e-11
>seq30
Length=14751797
Score = 138 bits (152), Expect = 2e-27
Identities = 153/203 (75%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || ||||| || ||||| || || || ||||||| ||| | || ||||| | |||
Sbjct 13753771 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATA-AATACACCCATCTTCCATTTGC 13753713
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||||||||||||||| |||| ||||| |||| ||||||||||| |||||
Sbjct 13753712 TTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGGAATTCTTTCCTTATCTTAGATCTTG 13753653
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||||||| || ||||| ||||| || || | | || ||||| || |
Sbjct 13753652 GCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAGCATGATGGTCTTCCCAATA 13753593
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || || | || ||||||||
Sbjct 13753592 AGGGTTTTAATGAAAATCTGCAT 13753570
>seq26
Length=15501076
Score = 138 bits (152), Expect = 2e-27
Identities = 149/197 (76%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673
|| || || ||||| || || || ||||| | | | | ||||| ||||| || ||
Sbjct 10001846 GTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGTCAATCTTCCAGTTGCTTATCA 10001905
Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733
||||||||||||||||| |||| ||||| |||||||||||||| || ||||| || |||
Sbjct 10001906 GCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 10001965
Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793
|||||||| || ||||| ||||| || |||| || || ||||| |||| | ||
Sbjct 10001966 ACATTTTCTATAGTATC---TGGTTCAACCTCCATTGTAATAGTCTTCTCTGTAAGGGTT 10002022
Query 82794 TTTACAAATATCTGCAT 82810
||||| || ||||||||
Sbjct 10002023 TTTACGAAAATCTGCAT 10002039
>seq739
Length=148672
Score = 125 bits (138), Expect = 1e-23
Identities = 165/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||||| ||| ||||| || ||||||||||| ||||| ||||| || | || |||||
Sbjct 36644 ACCTCCTCACAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGA 36585
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || |||| || ||| |||||| |||| | || || ||| || ||
Sbjct 36584 GAGGGTGCACCCCTCTTTCAGAATTTTGCCAGCATAGATCAACCTGTGCCGATTAGGGGG 36525
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| ||||||| ||| |||||||| || ||||| ||| | || ||| | || || ||
Sbjct 36524 GATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCAC 36468
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||||||||||| ||||| | || ||||||||
Sbjct 36467 CTCTAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATCAAGATCTGCAT 36420
>seq6
Length=30479472
Score = 125 bits (138), Expect = 1e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673
|| || || ||||| || | | ||||| | | | | || ||||| ||||| || |||
Sbjct 3763725 GTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATCTTCCAGTTGCTTACCA 3763666
Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733
|||||||| |||||||| ||||| ||||| |||||||||||||| || ||||| ||||||
Sbjct 3763665 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTT 3763606
Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793
||||||| | || || ||||| | |||| || | ||||| ||||| | ||
Sbjct 3763605 GCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAACAGTCTTCCCTGTAAGGGTT 3763546
Query 82794 TTTACAAATATCTGCAT 82810
|||| || ||||||||
Sbjct 3763545 TTTATGAAAATCTGCAT 3763529
>seq455
Length=570085
Score = 123 bits (136), Expect = 5e-23
Identities = 156/213 (73%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
|||||| | || || || || || |||| || || || ||||| | | | || ||
Sbjct 193671 CAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATC 193612
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
||||||||| || ||||||||||| || ||||| ||||| ||||| |||||||||||||
Sbjct 193611 TTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATT 193552
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777
|| ||||| ||||||| |||||| || ||| |||||| || | | ||| || ||
Sbjct 193551 CTGGATCTTGGCTTTTATATTTTCTATAGTA----AAGGTTCAACCTTGAGAGTAATAGT 193496
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| || | || | |||| || ||||||||
Sbjct 193495 CTTCCCCAT-AAGGGTTTTATGAAAATCTGCAT 193464
>seq1607
Length=19272
Score = 116 bits (128), Expect = 7e-21
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| | ||| |||| || ||||||||||| ||||| ||||| || | || |||||
Sbjct 6406 ACCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGA 6347
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | | | ||||| || ||| ||||||||||| | || || | || || ||
Sbjct 6346 GAGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGG 6287
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| ||||||| ||| |||||||| || ||||| ||| | | ||| | || || ||
Sbjct 6286 GATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGAGTCACTGGGCTCCAC 6230
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||| || |||| ||||| || || ||||||||
Sbjct 6229 CTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182
>seq3
Length=41493964
Score = 111 bits (122), Expect = 3e-19
Identities = 206/300 (69%), Gaps = 2/300 (1%)
Strand=Plus/Plus
Query 50686 ACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCC 50745
|||||| ||| |||||||| || ||| | |||| || ||||||| ||||||
Sbjct 8287236 ACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCT 8287295
Query 50746 TTGGATACATTAAA-TTGTGTAGAACCGAAATTAAATAATAGAACACTTACGTTACCTCT 50804
|| ||| | ||| || | | | || |||||||| || | ||||| | || |||||
Sbjct 8287296 TTTTTTACTTCAAACTTCTCTTTA-CCAAAATTAAACAACACAACACCAATATTTCCTCT 8287354
Query 50805 ATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGA 50864
||| ||| || || |||||||| ||||| ||||| || || || ||| || || ||
Sbjct 8287355 ATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGA 8287414
Query 50865 TCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTATATCTGTTTTTAT 50924
| ||||||||||| || ||| | ||| ||| | ||| || |||||||| |
Sbjct 8287415 ACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCAC 8287474
Query 50925 TAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGC 50984
| | || ||||||||| || || ||||||||| || || || | ||| || || ||
Sbjct 8287475 AAGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGC 8287534
>seq93
Length=7280091
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/131 (78%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| ||||| || ||||||||||| ||||| || ||||| ||||| | |||||||
Sbjct 3503789 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTTCC 3503731
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
||||| || ||||| || ||||||||||| || | || |||||| || || | ||
Sbjct 3503730 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAGCGTA 3503672
Query 82773 ATCGTCTTGCC 82783
|| ||||| ||
Sbjct 3503671 ATAGTCTTCCC 3503661
>seq42
Length=12273399
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369
||| ||||||||||| ||| |||||||||| |||||||| |||||||| | || |||||
Sbjct 10271147 AGCGTTTTTCGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATGG 10271206
Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429
| | || | ||| || | || | |||||| | |||||||| || || || || ||
Sbjct 10271207 GTTAACCGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTAACCAT 10271266
Query 60430 AATGCA 60435
||||
Sbjct 10271267 GTTGCA 10271272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981670168091737
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |