Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 1e-17
seq42 102 1e-16
>seq3
Length=41493964
Score = 105 bits (116), Expect = 1e-17
Identities = 205/300 (68%), Gaps = 2/300 (1%)
Strand=Plus/Plus
Query 48975 ACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCC 49034
|||||| ||| |||||||| || ||| | |||| || ||||||| ||||||
Sbjct 8287236 ACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCT 8287295
Query 49035 TTGGATACATTAAA-TGGTATAGAACTGAAATTAAATAATAGAACACCTACGTTACCTCT 49093
|| ||| | ||| | | | | | |||||||| || | |||||| | || |||||
Sbjct 8287296 TTTTTTACTTCAAACTTCTCTTTACCA-AAATTAAACAACACAACACCAATATTTCCTCT 8287354
Query 49094 ATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGA 49153
||| ||| || || |||||||| ||||| ||||| || || || ||| || || ||
Sbjct 8287355 ATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGA 8287414
Query 49154 TCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTATATCTGTTTTTAT 49213
| ||||||||||| || ||| | ||| ||| | ||| || |||||||| |
Sbjct 8287415 ACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCAC 8287474
Query 49214 TAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGC 49273
| | || ||||||||| || || ||||||||| || || || | ||| || || ||
Sbjct 8287475 AAGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGC 8287534
>seq42
Length=12273399
Score = 102 bits (112), Expect = 1e-16
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438
|| || |||||||||| | |||||||||| | || || || || ||||||||||| ||
Sbjct 10269697 GCTTTGTGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 10269756
Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498
|| ||||| || ||||| ||| || || || || ||||| || | ||| ||||||
Sbjct 10269757 CTAAGGAAGAAAAACAATCAGGTTTCTTTCCTTCATGTGTATCACCACTGTACCATGTTT 10269816
Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
|| || | ||| | || ||||||||| | ||||| || ||
Sbjct 10269817 ACCTTGTGGTGGATTGGAATTAAATGGGTCGCAGGGGGACA 10269857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903270233974880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |