Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-17 seq42 102 1e-16 >seq3 Length=41493964 Score = 105 bits (116), Expect = 1e-17 Identities = 205/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 48975 ACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCC 49034 |||||| ||| |||||||| || ||| | |||| || ||||||| |||||| Sbjct 8287236 ACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCT 8287295 Query 49035 TTGGATACATTAAA-TGGTATAGAACTGAAATTAAATAATAGAACACCTACGTTACCTCT 49093 || ||| | ||| | | | | | |||||||| || | |||||| | || ||||| Sbjct 8287296 TTTTTTACTTCAAACTTCTCTTTACCA-AAATTAAACAACACAACACCAATATTTCCTCT 8287354 Query 49094 ATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGA 49153 ||| ||| || || |||||||| ||||| ||||| || || || ||| || || || Sbjct 8287355 ATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGA 8287414 Query 49154 TCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTATATCTGTTTTTAT 49213 | ||||||||||| || ||| | ||| ||| | ||| || |||||||| | Sbjct 8287415 ACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCAC 8287474 Query 49214 TAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGC 49273 | | || ||||||||| || || ||||||||| || || || | ||| || || || Sbjct 8287475 AAGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGC 8287534 >seq42 Length=12273399 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || || |||||||||| | |||||||||| | || || || || ||||||||||| || Sbjct 10269697 GCTTTGTGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 10269756 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| ||| || || || || ||||| || | ||| |||||| Sbjct 10269757 CTAAGGAAGAAAAACAATCAGGTTTCTTTCCTTCATGTGTATCACCACTGTACCATGTTT 10269816 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || ||||||||| | ||||| || || Sbjct 10269817 ACCTTGTGGTGGATTGGAATTAAATGGGTCGCAGGGGGACA 10269857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903270233974880