Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024486.1
Length=43734
Score E
Sequences producing significant alignments: (Bits) Value
seq3 80.6 7e-11
>seq3
Length=41493964
Score = 80.6 bits (88), Expect = 7e-11
Identities = 111/153 (73%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 1336 TTGTTAGCACTGACATTTCTATAG-TCTTACCTCGTGGTTGTTACGGCAGAATAGCTCCA 1394
|||| | || |||||| |||| |||| | || ||| || || || ||||||||||||
Sbjct 8287476 TTGTGAAAACAGACATTCAGATAGCTCTTCCTTC-TGGGTGCTATGGAAGAATAGCTCCA 8287418
Query 1395 AGATCCGGTCTAGCGGCAAAGTATTCAATTGATGTGGGCGCTGGAGTTATTGACCCTGAT 1454
| || || || || ||||| || | || ||||| || ||||| || || || |||
Sbjct 8287417 CGTTCTGGCCTGGCTGCAAAATACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGAT 8287358
Query 1455 TATCGTGGAAGTATCAGTGTTGTTTTATTTAAT 1487
||| | |||| ||| ||||||| || ||||||
Sbjct 8287357 TATAGAGGAAATATTGGTGTTGTGTTGTTTAAT 8287325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139806472627616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |