Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq3 80.6 7e-11 >seq3 Length=41493964 Score = 80.6 bits (88), Expect = 7e-11 Identities = 111/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 1336 TTGTTAGCACTGACATTTCTATAG-TCTTACCTCGTGGTTGTTACGGCAGAATAGCTCCA 1394 |||| | || |||||| |||| |||| | || ||| || || || |||||||||||| Sbjct 8287476 TTGTGAAAACAGACATTCAGATAGCTCTTCCTTC-TGGGTGCTATGGAAGAATAGCTCCA 8287418 Query 1395 AGATCCGGTCTAGCGGCAAAGTATTCAATTGATGTGGGCGCTGGAGTTATTGACCCTGAT 1454 | || || || || ||||| || | || ||||| || ||||| || || || ||| Sbjct 8287417 CGTTCTGGCCTGGCTGCAAAATACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGAT 8287358 Query 1455 TATCGTGGAAGTATCAGTGTTGTTTTATTTAAT 1487 ||| | |||| ||| ||||||| || |||||| Sbjct 8287357 TATAGAGGAAATATTGGTGTTGTGTTGTTTAAT 8287325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139806472627616