Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14 131 2e-25 seq126 118 1e-21 seq118 111 2e-19 seq13 102 8e-17 seq26 82.4 7e-11 >seq14 Length=21378024 Score = 131 bits (144), Expect = 2e-25 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || |||||||| | ||| | | | ||||| || Sbjct 6329936 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCA-TCCTCCAG 6329878 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||||||| | || || |||||||| || || |||||||| |||||||| ||| Sbjct 6329877 CTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTC-TTGAA 6329819 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||| | ||||| ||||||| || |||| ||||| ||| |||| Sbjct 6329818 TTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGC 6329759 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 6329758 CCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||||| | ||| | | | ||||| || Sbjct 680943 AAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCA-TCCTCCAG 680885 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| || | || || |||||||| || || |||||||| |||||||| ||| Sbjct 680884 CTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTC-TTGAA 680826 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||| | ||||| ||||||| || |||| ||||| ||| |||| Sbjct 680825 TTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGC 680766 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || |||||||| Sbjct 680765 CCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq118 Length=6029945 Score = 111 bits (122), Expect = 2e-19 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCG--TGGACGAGTCCTCGAGCTGCTTG 133520 ||||||||||||||| |||||| ||| | | | || | || || ||||||||| Sbjct 3917705 GGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTG 3917764 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | ||||||| || |||||| ||||| |||||||| || || || |||| | Sbjct 3917765 CCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAGCC 3917824 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||||| || |||||| || | ||||| || ||||| ||||| Sbjct 3917825 TTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCAGG 3917884 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 3917885 GTCTTCACAAAGATCTGCAT 3917904 >seq13 Length=21495731 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || |||||||| | ||| ||||| ||||| || || Sbjct 9191898 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTACCT 9191839 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || | || || ||||||| || || |||||||| |||| ||| ||| |||||| || Sbjct 9191838 GCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTC-TTGAAATTTTGCTTT 9191780 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || |||| ||||| ||| ||||| |||| || Sbjct 9191779 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGT 9191720 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || ||||| || Sbjct 9191719 CTTCACAAAGATCTGAAT 9191702 >seq26 Length=15501076 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/188 (71%), Gaps = 9/188 (5%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGA--CGAGTCCTCGA 133512 || || | || ||||||||| ||| ||||||| | ||| | | | ||||| | Sbjct 5948124 AAGTGCAGGGAGGACTCTTTATGT----TGTAATCTGAGAGAGTGCAGCCAAATCCTCCA 5948069 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| |||||| | | || || ||||||||||| | |||||||| |||||||| ||| Sbjct 5948068 GCTGTTTGCCCACAAATATCAGGCGCTGCTGGTC-TGTGGGATGCCCTCCTTGTC-TTGA 5948011 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || |||| | |||| ||||| ||||||| || | || ||||| || ||| Sbjct 5948010 ATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGACCTTGAGGGTGATGGCCTTG 5947951 Query 133632 CCGGTCAG 133639 || ||||| Sbjct 5947950 CCCGTCAG 5947943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483345368226920