Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq14 131 2e-25
seq126 118 1e-21
seq118 111 2e-19
seq13 102 8e-17
seq26 82.4 7e-11
>seq14
Length=21378024
Score = 131 bits (144), Expect = 2e-25
Identities = 157/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||||||||| || |||||||| | ||| | | | ||||| ||
Sbjct 6329936 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCA-TCCTCCAG 6329878
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| |||||||| | || || |||||||| || || |||||||| |||||||| |||
Sbjct 6329877 CTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTC-TTGAA 6329819
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | ||| | ||||| ||||||| || |||| ||||| ||| ||||
Sbjct 6329818 TTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGC 6329759
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || || || || ||||||||
Sbjct 6329758 CCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 118 bits (130), Expect = 1e-21
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||||||||| || ||||||| | ||| | | | ||||| ||
Sbjct 680943 AAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCA-TCCTCCAG 680885
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| ||||| || | || || |||||||| || || |||||||| |||||||| |||
Sbjct 680884 CTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTC-TTGAA 680826
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | ||| | ||||| ||||||| || |||| ||||| ||| ||||
Sbjct 680825 TTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGC 680766
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| |||| || || || || ||||||||
Sbjct 680765 CCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq118
Length=6029945
Score = 111 bits (122), Expect = 2e-19
Identities = 145/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCG--TGGACGAGTCCTCGAGCTGCTTG 133520
||||||||||||||| |||||| ||| | | | || | || || |||||||||
Sbjct 3917705 GGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTG 3917764
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| || | ||||||| || |||||| ||||| |||||||| || || || |||| |
Sbjct 3917765 CCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAGCC 3917824
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||||| ||||| || |||||| || | ||||| || ||||| |||||
Sbjct 3917825 TTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCAGG 3917884
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || || || ||||||||
Sbjct 3917885 GTCTTCACAAAGATCTGCAT 3917904
>seq13
Length=21495731
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||||||||| || |||||||| | ||| ||||| ||||| || ||
Sbjct 9191898 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTACCT 9191839
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582
|| | || || ||||||| || || |||||||| |||| ||| ||| |||||| ||
Sbjct 9191838 GCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTC-TTGAAATTTTGCTTT 9191780
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||| | ||||| ||||||| || |||| ||||| ||| ||||| |||| ||
Sbjct 9191779 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGT 9191720
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || ||||| ||
Sbjct 9191719 CTTCACAAAGATCTGAAT 9191702
>seq26
Length=15501076
Score = 82.4 bits (90), Expect = 7e-11
Identities = 134/188 (71%), Gaps = 9/188 (5%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGA--CGAGTCCTCGA 133512
|| || | || ||||||||| ||| ||||||| | ||| | | | ||||| |
Sbjct 5948124 AAGTGCAGGGAGGACTCTTTATGT----TGTAATCTGAGAGAGTGCAGCCAAATCCTCCA 5948069
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||| |||||| | | || || ||||||||||| | |||||||| |||||||| |||
Sbjct 5948068 GCTGTTTGCCCACAAATATCAGGCGCTGCTGGTC-TGTGGGATGCCCTCCTTGTC-TTGA 5948011
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || |||| | |||| ||||| ||||||| || | || ||||| || |||
Sbjct 5948010 ATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGACCTTGAGGGTGATGGCCTTG 5947951
Query 133632 CCGGTCAG 133639
|| |||||
Sbjct 5947950 CCCGTCAG 5947943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483345368226920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |