Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq35 237 2e-57
seq68 167 3e-36
seq231 127 2e-24
>seq35
Length=13537455
Score = 237 bits (262), Expect = 2e-57
Identities = 610/920 (66%), Gaps = 17/920 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||| || || || | || |||
Sbjct 11997598 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGAACAGCAAAGAGATCGACGTCCA 11997539
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || || | ||| ||| | | | | |||||| || | || || |
Sbjct 11997538 GGTCAAACTTATTGGCAAAAAAGTGGTGCT--TACGT-AGTATCCAGTTCAAGTCGCCAG 11997482
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| || ||||| || ||||| || || ||| |||| || || || || || || |
Sbjct 11997481 CTCCGAAAACACACACTGAGCGCACATGGACCCCGTTGCAGGGTGGGTAAAGTGCACCCT 11997422
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| | | || || || |||| |||||||| || ||||| | | | ||||||||| |
Sbjct 11997421 GGGCAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAACGGACTGCATGTCAG 11997362
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| ||| ||||||| | | | || | || || || | || | ||||| | ||
Sbjct 11997361 ACAAGTCATACTTGTGGCTTAAGGACAGTGAGCCTGGGACCTCAGGGATCCTCTGAATAG 11997302
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || ||||| || ||||| || | | |||||||||||||| |||
Sbjct 11997301 TGGCCCAGAGATACTCATCTGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTG-TGA 11997243
Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
||||| || | ||| | || ||||| ||| | || | ||| || || ||
Sbjct 11997242 ATGTTTTCATTCTCTAGCACATACCTCACGTACTCCCTACTGACCACAAAATAGGCACTG 11997183
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||||| ||| | | ||||| || ||||| | ||||| || | |
Sbjct 11997182 CCCGAAAACAAAGGTGTTTTGAGTGGAGGATGCCCTTTGACAGTCCCCGTATTAGTCAAC 11997123
Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG--- 162594
|||| | | |||||| || |||| ||||||| | |||| | |||| ||
Sbjct 11997122 TTTCCATTAATGACCACATGATGCTTCTTCCACCTTTCT-TCTTTAT--TAGATGGCATC 11997066
Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654
| ||| || || || |||| |||| || | ||| |||| | || || || ||
Sbjct 11997065 TTTTCCGTTTCCAGGTTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGG 11997006
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
||||| |||| ||||| || || || ||||| || | || ||||| || | ||
Sbjct 11997005 TTGGTTTTAATAGGAAAATCTAACCCACAAAGATTGATCAAGTACTTCCAATTGGCACTC 11996946
Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774
| || ||| || |||| | ||||| ||||||||||| || |||||||| || || ||
Sbjct 11996945 ATTCTGTAGAGGTCCTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAGGATGCATAA 11996886
Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834
|| || |||||||| | |||| |||||||| || |||||| || | || |||||
Sbjct 11996885 ACTACATTCTCCAACTGACTGGCCACAAAGACGTTACTGAAACAGGATGCGATGCCCATT 11996826
Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
|| || || | | | |||| | ||| | ||||| || | |||||| | ||||
Sbjct 11996825 ACCGC---TGCTATAAAGGAGTCCTCTGATTTTTTGTCTACATGAATGCAGTAGAAATTC 11996769
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
||||| |||||||||||||| | || || | ||| || || || || || |||||
Sbjct 11996768 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 11996709
Query 162952 ATAGAATACGCTATGGGGAA 162971
|| || || || || |||||
Sbjct 11996708 ATGGAGTATGCAATTGGGAA 11996689
>seq68
Length=9168529
Score = 167 bits (184), Expect = 3e-36
Identities = 230/322 (71%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|||| || || || |||| | | ||| || || || || | ||| || || || | ||
Sbjct 19205 CATAAAGGGTGAGGCAGGCTGTTCTCGAGATCTTCCCAGAACTAAAGGTGTTGAAGAGAC 19146
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|||| |||| || |||||||||| || |||||||| || || | || || || ||
Sbjct 19145 ACATGTAACACCCCTCGTCCTCCAGCGTTGTGTTCCAGAAGGTGATGGTTGAGTTCTGGA 19086
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || | || |||||||| | | || ||| | ||||||||| ||||| || ||
Sbjct 19085 GTCCCAGCTCGGTGATGTTCACTCTGCCCCGGTAGGCAGGCTGGACCACAACCCCATGGC 19026
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|| |||| | || |||||||||| ||||| |||||| | |||||||| || || |
Sbjct 19025 TCCTGCTGTAGGTAACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAA 18966
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || |||||| | | | ||| ||||| |||||||| || ||||||||||||| |
Sbjct 18965 TCAAGGCTTCTTGGGCAGATTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGCA 18906
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| |||| || || || |||||
Sbjct 18905 ACTTTTCATCCTGGGTCACCAC 18884
Score = 134 bits (148), Expect = 2e-26
Identities = 179/248 (72%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| || || || ||||||||| || | |||| ||| || |||||||
Sbjct 21352 ACAGTTTGCTTGTACTCAGTCACAGTCCCCTGGTACAGCACTTGGCAGATTACCTCCT-- 21295
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| |||||||||||||| || ||||| || | || ||||| || |||||||| ||||||
Sbjct 21294 -TCCCCACTTGACTTTTGGGGTCTTTGACACGGAGTATGCTGGTGACAGATGTGGTCCCG 21236
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
||| | |||| | | | |||||| || || || || || || ||||| ||||| |
Sbjct 21235 TTAGGGTGTAACAGACTCTCAGTACTGTTCTCAATCCCTGACCCAGCAACCTTCCAGGAG 21176
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| | || ||||| | ||||| ||||||||||| || |||| ||||| |||||
Sbjct 21175 ATCATGGGTGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAA 21116
Query 171743 TCATAGTG 171750
| |||||
Sbjct 21115 TTGTAGTG 21108
>seq231
Length=2670637
Score = 127 bits (140), Expect = 2e-24
Identities = 419/640 (65%), Gaps = 15/640 (2%)
Strand=Plus/Plus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| |||| | || || | | ||
Sbjct 1429140 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTGG 1429199
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | || | || | ||||
Sbjct 1429200 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAACGAATCCGCTGGAATATAAT 1429259
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || || || |||| ||| || || | ||||| | || |||| || ||
Sbjct 1429260 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAAAAAAGCAT 1429319
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || || |||| | ||||| ||||| | |||||| ||||
Sbjct 1429320 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAGAGATAAAATT 1429379
Query 177127 TACAGG--AAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
|||| | |||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 1429380 TACAAGTAGAGATGGTA--GGAATCAAATTTTTATCATTCACATATTCTCCAAATGCTTG 1429437
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || || || || || ||| || ||||| ||| || || || || | |
Sbjct 1429438 CCCATAGGTGTGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 1429496
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || ||||| || || ||||| |||||||| || ||
Sbjct 1429497 GTTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 1429551
Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| | || || | || | | || | ||| | | ||||| ||||| || ||||| |
Sbjct 1429552 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 1429610
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420
|||| || | ||| || | || || ||||| || | || ||||| || |||
Sbjct 1429611 AGTCACGGCGGTAGGTCAGAGTCAGGTTGAACAGATGCTCAATACCACTCTTCTGGGGAG 1429670
Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480
| | | | || ||||| || |||||||| ||||| || || |||| ||||||| | |
Sbjct 1429671 TATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGCGGTCTGGCCTGCT 1429730
Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520
||||| | || |||| ||| || |||| ||| ||
Sbjct 1429731 GAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 1429770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578341742916800
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