Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq35 237 2e-57 seq68 167 3e-36 seq231 127 2e-24 >seq35 Length=13537455 Score = 237 bits (262), Expect = 2e-57 Identities = 610/920 (66%), Gaps = 17/920 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||| || || || | || ||| Sbjct 11997598 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGAACAGCAAAGAGATCGACGTCCA 11997539 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || | ||| ||| | | | | |||||| || | || || | Sbjct 11997538 GGTCAAACTTATTGGCAAAAAAGTGGTGCT--TACGT-AGTATCCAGTTCAAGTCGCCAG 11997482 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || ||||| || || ||| |||| || || || || || || | Sbjct 11997481 CTCCGAAAACACACACTGAGCGCACATGGACCCCGTTGCAGGGTGGGTAAAGTGCACCCT 11997422 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | | || || || |||| |||||||| || ||||| | | | ||||||||| | Sbjct 11997421 GGGCAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAACGGACTGCATGTCAG 11997362 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| ||||||| | | | || | || || || | || | ||||| | || Sbjct 11997361 ACAAGTCATACTTGTGGCTTAAGGACAGTGAGCCTGGGACCTCAGGGATCCTCTGAATAG 11997302 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || ||||| || | | |||||||||||||| ||| Sbjct 11997301 TGGCCCAGAGATACTCATCTGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTG-TGA 11997243 Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 ||||| || | ||| | || ||||| ||| | || | ||| || || || Sbjct 11997242 ATGTTTTCATTCTCTAGCACATACCTCACGTACTCCCTACTGACCACAAAATAGGCACTG 11997183 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | ||||| || ||||| | ||||| || | | Sbjct 11997182 CCCGAAAACAAAGGTGTTTTGAGTGGAGGATGCCCTTTGACAGTCCCCGTATTAGTCAAC 11997123 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG--- 162594 |||| | | |||||| || |||| ||||||| | |||| | |||| || Sbjct 11997122 TTTCCATTAATGACCACATGATGCTTCTTCCACCTTTCT-TCTTTAT--TAGATGGCATC 11997066 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | ||| || || || |||| |||| || | ||| |||| | || || || || Sbjct 11997065 TTTTCCGTTTCCAGGTTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGG 11997006 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || || || ||||| || | || ||||| || | || Sbjct 11997005 TTGGTTTTAATAGGAAAATCTAACCCACAAAGATTGATCAAGTACTTCCAATTGGCACTC 11996946 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || ||| || |||| | ||||| ||||||||||| || |||||||| || || || Sbjct 11996945 ATTCTGTAGAGGTCCTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAGGATGCATAA 11996886 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || |||||||| | |||| |||||||| || |||||| || | || ||||| Sbjct 11996885 ACTACATTCTCCAACTGACTGGCCACAAAGACGTTACTGAAACAGGATGCGATGCCCATT 11996826 Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || || || | | | |||| | ||| | ||||| || | |||||| | |||| Sbjct 11996825 ACCGC---TGCTATAAAGGAGTCCTCTGATTTTTTGTCTACATGAATGCAGTAGAAATTC 11996769 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 11996768 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 11996709 Query 162952 ATAGAATACGCTATGGGGAA 162971 || || || || || ||||| Sbjct 11996708 ATGGAGTATGCAATTGGGAA 11996689 >seq68 Length=9168529 Score = 167 bits (184), Expect = 3e-36 Identities = 230/322 (71%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||| || || || |||| | | ||| || || || || | ||| || || || | || Sbjct 19205 CATAAAGGGTGAGGCAGGCTGTTCTCGAGATCTTCCCAGAACTAAAGGTGTTGAAGAGAC 19146 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| || |||||||||| || |||||||| || || | || || || || Sbjct 19145 ACATGTAACACCCCTCGTCCTCCAGCGTTGTGTTCCAGAAGGTGATGGTTGAGTTCTGGA 19086 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || |||||||| | | || ||| | ||||||||| ||||| || || Sbjct 19085 GTCCCAGCTCGGTGATGTTCACTCTGCCCCGGTAGGCAGGCTGGACCACAACCCCATGGC 19026 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 || |||| | || |||||||||| ||||| |||||| | |||||||| || || | Sbjct 19025 TCCTGCTGTAGGTAACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAA 18966 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || |||||| | | | ||| ||||| |||||||| || ||||||||||||| | Sbjct 18965 TCAAGGCTTCTTGGGCAGATTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGCA 18906 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | |||| || || || ||||| Sbjct 18905 ACTTTTCATCCTGGGTCACCAC 18884 Score = 134 bits (148), Expect = 2e-26 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| || || || ||||||||| || | |||| ||| || ||||||| Sbjct 21352 ACAGTTTGCTTGTACTCAGTCACAGTCCCCTGGTACAGCACTTGGCAGATTACCTCCT-- 21295 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||||||||||||| || ||||| || | || ||||| || |||||||| |||||| Sbjct 21294 -TCCCCACTTGACTTTTGGGGTCTTTGACACGGAGTATGCTGGTGACAGATGTGGTCCCG 21236 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 ||| | |||| | | | |||||| || || || || || || ||||| ||||| | Sbjct 21235 TTAGGGTGTAACAGACTCTCAGTACTGTTCTCAATCCCTGACCCAGCAACCTTCCAGGAG 21176 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | || ||||| | ||||| ||||||||||| || |||| ||||| ||||| Sbjct 21175 ATCATGGGTGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAA 21116 Query 171743 TCATAGTG 171750 | ||||| Sbjct 21115 TTGTAGTG 21108 >seq231 Length=2670637 Score = 127 bits (140), Expect = 2e-24 Identities = 419/640 (65%), Gaps = 15/640 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | || Sbjct 1429140 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTGG 1429199 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | || | || | |||| Sbjct 1429200 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAACGAATCCGCTGGAATATAAT 1429259 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 1429260 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAAAAAAGCAT 1429319 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | |||||| |||| Sbjct 1429320 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAGAGATAAAATT 1429379 Query 177127 TACAGG--AAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | |||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 1429380 TACAAGTAGAGATGGTA--GGAATCAAATTTTTATCATTCACATATTCTCCAAATGCTTG 1429437 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || || || || || ||| || ||||| ||| || || || || | | Sbjct 1429438 CCCATAGGTGTGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 1429496 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || ||||| |||||||| || || Sbjct 1429497 GTTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 1429551 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 1429552 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 1429610 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 |||| || | ||| || | || || ||||| || | || ||||| || ||| Sbjct 1429611 AGTCACGGCGGTAGGTCAGAGTCAGGTTGAACAGATGCTCAATACCACTCTTCTGGGGAG 1429670 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 | | | | || ||||| || |||||||| ||||| || || |||| ||||||| | | Sbjct 1429671 TATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGCGGTCTGGCCTGCT 1429730 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 1429731 GAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 1429770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578341742916800