Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq68 230 3e-55 seq128 183 4e-41 seq82 165 1e-35 seq89 145 9e-30 seq394 132 6e-26 seq106 102 1e-16 >seq68 Length=9168529 Score = 230 bits (254), Expect = 3e-55 Identities = 241/317 (76%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| | | ||||||||||||| || || ||| | | ||| || ||| Sbjct 18884 GTGGTGACCCAGGATGAAAAGTTGCTGCTGAACACACCTGCATCCTTAAGATGTTCTCTG 18943 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || || | || || | ||||||| || |||||||||| ||| | | ||||| Sbjct 18944 CAATCTGCCCAAGAAGCCTTGATTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAA 19003 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | |||| ||| ||||| ||||||||||| || || || || Sbjct 19004 AACATGGTTACCTACAGCAGGAGCCATGGGGTTGTGGTCCAGCCTGCCTACCGGGGCAGA 19063 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | ||||||||| |||| |||||||| |||||||||||||| || ||||| || || | Sbjct 19064 GTGAACATCACCGAGCTGGGACTCCAGAACTCAACCATCACCTTCTGGAACACAACGCTG 19123 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 |||||||||||||| |||| || ||||| ||||||||| | |||||||| |||||| | Sbjct 19124 GAGGACGAGGGGTGTTACATGTGTCTCTTCAACACCTTTAGTTCTGGGAAGATCTCGAGA 19183 Query 171372 GTGGCCTGCCTCACCCT 171388 |||||||||||||| Sbjct 19184 ACAGCCTGCCTCACCCT 19200 Score = 188 bits (208), Expect = 8e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || || || || ||||| |||||||| || ||||| || Sbjct 21087 GTACAGCCCACAGTATTCCTTCACTACAATTTCTTTGAAGACCACCTAAATATCACTTGC 21146 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| |||| ||| | |||||| || | ||||||| ||||| Sbjct 21147 TCTGCCACTGCCCGCCCAGCACCCATGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 21206 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||| | || |||| || || || ||||| ||||| |||||| Sbjct 21207 AACAGTACTGAGAGTCTGTTACACCCTAACGGGACCACATCTGTCACCAGCATACTCCGT 21266 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||| ||||| |||| |||||||| |||||||||||| | ||| ||| Sbjct 21267 GTCAAAGACCCCAAAAGTCAAGTGGGGAAGGAGGTAATCTGCCAAGTGCTGTACCAGGGG 21326 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| | | | | ||||||| | ||| |||| Sbjct 21327 ACTGTGACTGAGTACAAGCAAACTGTGAACAAAGGTA 21363 >seq128 Length=5608787 Score = 183 bits (202), Expect = 4e-41 Identities = 540/821 (66%), Gaps = 31/821 (4%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||| | || | ||||| | ||||| | ||||| | || |||||| Sbjct 223791 GTACTCCCTGGTGCTCGTGGTGGGGCTCCTGGGCAACGTGGTGGTGGTGCTGATCCTCAC 223850 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| |||||||| | ||||||||||||||| ||| |||||||||| || ||| Sbjct 223851 CAAGTACCGGAGGCTCAAGGTCATGACCAACATCTATCTGCTCAACCTGGCGATTTCTGA 223910 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || ||||| ||||| |||| | | ||| ||||| | Sbjct 223911 CTTGCTCTTTCTCTTCACTCTTCCCTTCTGGATCCACTAC--GTTGGGTGGAAC----GA 223964 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | |||||| ||| | | ||| ||| || ||| |||| Sbjct 223965 GTGGGTTTTTGGTCCTTTCATGTGCAAGCTCCTCTCGGGGTTTTATTACCTGGGCTTGTA 224024 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | |||||||| || || | || |||| Sbjct 224025 CAGCGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATCGTCCACGC 224084 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| ||| | | || || | |||| || | |||| Sbjct 224085 CGTGTTTGCCCTTCGAGCCCGGACGGTGACTTTCGGTGTCAGCAGCAGCATCTTCACCTG 224144 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | | ||||| ||| ||| || | || || ||||||||| | || ||| | | | | | Sbjct 224145 GGTCCTGGCAGTGCTGGCGGCCCTCCCCGAATTTATCTTTCACGAGTCCCAACAGGGCTC 224204 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGGGGG 9076 | || ||||| || |||| |||| | |||| |||||| | Sbjct 224205 CGAAGAGTCTGTCTG-CAGTCCTCTCTACCCAGAGGACGAGGAAGACAGCTGGAAGCGTT 224263 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 | ||| | || |||| ||| | || || ||| |||| ||||||||| ||| Sbjct 224264 TCCATGCTCTGAGAATGAACATCTTGGGTCTAGCGCTCCCTCTGCTCATCATGGCCGTCT 224323 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-A 9194 |||||| |||||||| ||| || | | |||| ||||| || ||| | | | Sbjct 224324 GCTACTCTGGGATCATCAAAACCCTGCTGAGATGCCC-CAACA----GAAAAAAGTACAA 224378 Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254 ||| || ||||||||| ||||| ||||| | | ||| || || |||| ||||||||| Sbjct 224379 GGCCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCGTTTTCTGGACCCCCTACAA 224438 Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGC 9313 | | | ||| || | | | ||| | | | | | | ||| ||||| ||||| Sbjct 224439 CCTGGTTCTCCTTCTCTCTGCTTTTCAAATGAACTTACTGGAGTACAG-CTGTG-AGCGC 224496 Query 9314 -GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372 | | ||||| ||||| | |||| | ||| ||||||||| |||||||||||| Sbjct 224497 AGTAGACATCTGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTATACCCACTGCTGC 224556 Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCA 9413 |||||||| ||||||||||| || |||||||| | |||||| Sbjct 224557 GTCAACCCTGTCATCTACGCCTTCGTGGGCGAGAGGTTCCA 224597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 9317 GCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 |||||| ||||||||||| | |||| | ||| ||||||||| ||| |||||||| | Sbjct 178309 GCAGGGAGCTGGACATGGCCATTCAGGTGACCGAGGTGATCGCCTACACTCACTGCTGTG 178250 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGC 9402 |||||||||||||||| | ||||||||| Sbjct 178249 TCAACCCCGTCATCTATGTCTTTGTGGGC 178221 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 |||||||||||||| | ||||| | | ||||| ||||| | || |||| || Sbjct 295919 TACTCTCTGGTGTTCATCTTTGGTGTCGTGGGCAACCTGCTGGTAGTTCTCATCCTGATC 295978 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | || |||||| |||||| |||| ||||| ||||| | ||| Sbjct 295979 AACTGCAAAAGGCTGAAGAGCATGACTGACATCTACCTGCTCAACTTGGCCATCTCCGAC 296038 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | || |||||||||| || ||| ||||| Sbjct 296039 CTGCTTTTCCTTCTCACCCTCCCGTTCTGGGCTCACT 296075 >seq82 Length=8104705 Score = 165 bits (182), Expect = 1e-35 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | ||| || | ||||||||| ||||| || |||||||| ||||||||||| Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || |||||||||||||| || |||||||||||||||||||| || |||||||| | || Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||||| ||| ||||| || ||||| ||||| Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 34662 >seq89 Length=7633750 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| | | |||||||| Sbjct 5836148 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTAGTGGAGGTGA 5836207 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| |||| |||| || | |||||||| || |||| Sbjct 5836208 TGCCCCAGGCAGAGAACCACA------------GCCCAGATGTCAAGGAGCACGTGAACT 5836255 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| ||| || |||| ||||| ||| Sbjct 5836256 CCCTGGGGGAGAAGCTGAAGACCCTCAGACTGCGGCTCCGGCGCTGT 5836302 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||||||||| || || | |||||||| |||||||||||||| || || || ||||||| Sbjct 5838373 AGCTTCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5838432 Query 178522 TAGAAGCTTACATGACAACAAAAAT 178546 ||||||| ||||||||| | || || Sbjct 5838433 TAGAAGCCTACATGACAGCGAAGAT 5838457 >seq394 Length=841001 Score = 132 bits (146), Expect = 6e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 |||||||||||||| | ||| | ||| || || || | | || || |||| | ||| Sbjct 665324 AGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATGC 665383 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGT-AGGTGAGCAGCGAGTA 147026 | ||||||||| |||| ||| | | | ||| || ||||||| |||| ||||| | || Sbjct 665384 ATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATA 665443 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 |||| | ||| |||| || | |||| ||||||| | || ||||| ||||||| | ||| Sbjct 665444 GCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGCA 665503 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 || ||||||| || || ||| |||||||| |||| ||||| || |||||| Sbjct 665504 GGACAGCTCCCATTC-ACCTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGC 665557 >seq106 Length=6505572 Score = 102 bits (112), Expect = 1e-16 Identities = 176/249 (71%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 146875 TTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGGGCTCCACGTG 146933 |||||||| ||||| | | || ||| || || ||||||||||||| ||||| | ||| Sbjct 5366087 TTGAGCTTTGGGAAAGCTTTTGG-TTCTTGTACAAGCTGAATTTTCAGTGGCTCAATGTG 5366029 Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993 || ||||| | || || | | || ||| | |||||| | |||| ||| | || Sbjct 5366028 ATTAAGGTAAATATGTGCATTACGAAGAATGT--ATAAAGTCATCTGGCTGCAGGTCTGT 5365971 Query 146994 CACGTGGGCCACCATGT-AGGTGAGCAGCGAGTAGC--TGGCTATGTTGAAGGGGACCCC 147050 | ||| | | ||||| |||| ||||| | |||| ||| |||||||| || || || Sbjct 5365970 GATGTGTACAATCATGTAAGGTAAGCAGGGTATAGCAATGG--ATGTTGAAAGGCACGCC 5365913 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTA 147110 || ||||||| | || ||||| || |||||| ||| || |||||||| | || ||| Sbjct 5365912 CAAGCCCATGACTCCTGACCTATGATACAGCCAGCAGGACAGCTCCCCATTCACCTTGTA 5365853 Query 147111 AAACTGGCA 147119 |||| ||| Sbjct 5365852 GAACTAGCA 5365844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583396953991200