Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq68 230 3e-55
seq128 183 4e-41
seq82 165 1e-35
seq89 145 9e-30
seq394 132 6e-26
seq106 102 1e-16
>seq68
Length=9168529
Score = 230 bits (254), Expect = 3e-55
Identities = 241/317 (76%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||||||||||||||| | | ||||||||||||| || || ||| | | ||| || |||
Sbjct 18884 GTGGTGACCCAGGATGAAAAGTTGCTGCTGAACACACCTGCATCCTTAAGATGTTCTCTG 18943
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| || | || || | ||||||| || |||||||||| ||| | | |||||
Sbjct 18944 CAATCTGCCCAAGAAGCCTTGATTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAA 19003
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || | |||| ||| ||||| ||||||||||| || || || ||
Sbjct 19004 AACATGGTTACCTACAGCAGGAGCCATGGGGTTGTGGTCCAGCCTGCCTACCGGGGCAGA 19063
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
| ||||||||| |||| |||||||| |||||||||||||| || ||||| || || |
Sbjct 19064 GTGAACATCACCGAGCTGGGACTCCAGAACTCAACCATCACCTTCTGGAACACAACGCTG 19123
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
|||||||||||||| |||| || ||||| ||||||||| | |||||||| |||||| |
Sbjct 19124 GAGGACGAGGGGTGTTACATGTGTCTCTTCAACACCTTTAGTTCTGGGAAGATCTCGAGA 19183
Query 171372 GTGGCCTGCCTCACCCT 171388
||||||||||||||
Sbjct 19184 ACAGCCTGCCTCACCCT 19200
Score = 188 bits (208), Expect = 8e-43
Identities = 208/277 (75%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| |||||||| || || || || || || || ||||| |||||||| || ||||| ||
Sbjct 21087 GTACAGCCCACAGTATTCCTTCACTACAATTTCTTTGAAGACCACCTAAATATCACTTGC 21146
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||| ||||||||| |||| ||| | |||||| || | ||||||| |||||
Sbjct 21147 TCTGCCACTGCCCGCCCAGCACCCATGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 21206
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
||||||| ||| ||| | || |||| || || || ||||| ||||| ||||||
Sbjct 21207 AACAGTACTGAGAGTCTGTTACACCCTAACGGGACCACATCTGTCACCAGCATACTCCGT 21266
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
|| ||||||||||| ||||| |||| |||||||| |||||||||||| | ||| |||
Sbjct 21267 GTCAAAGACCCCAAAAGTCAAGTGGGGAAGGAGGTAATCTGCCAAGTGCTGTACCAGGGG 21326
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
| ||| ||| | | | | ||||||| | ||| ||||
Sbjct 21327 ACTGTGACTGAGTACAAGCAAACTGTGAACAAAGGTA 21363
>seq128
Length=5608787
Score = 183 bits (202), Expect = 4e-41
Identities = 540/821 (66%), Gaps = 31/821 (4%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||| | || | ||||| | ||||| | ||||| | || ||||||
Sbjct 223791 GTACTCCCTGGTGCTCGTGGTGGGGCTCCTGGGCAACGTGGTGGTGGTGCTGATCCTCAC 223850
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||| |||||||| | ||||||||||||||| ||| |||||||||| || |||
Sbjct 223851 CAAGTACCGGAGGCTCAAGGTCATGACCAACATCTATCTGCTCAACCTGGCGATTTCTGA 223910
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| |||| | | ||||| || ||||| ||||| |||| | | ||| ||||| |
Sbjct 223911 CTTGCTCTTTCTCTTCACTCTTCCCTTCTGGATCCACTAC--GTTGGGTGGAAC----GA 223964
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | | |||||| ||| | | ||| ||| || ||| ||||
Sbjct 223965 GTGGGTTTTTGGTCCTTTCATGTGCAAGCTCCTCTCGGGGTTTTATTACCTGGGCTTGTA 224024
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
|||||| || | || ||||||||| |||| | |||||||| || || | || ||||
Sbjct 224025 CAGCGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATCGTCCACGC 224084
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | | | ||| ||| | | || || | |||| || | ||||
Sbjct 224085 CGTGTTTGCCCTTCGAGCCCGGACGGTGACTTTCGGTGTCAGCAGCAGCATCTTCACCTG 224144
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029
| | ||||| ||| ||| || | || || ||||||||| | || ||| | | | | |
Sbjct 224145 GGTCCTGGCAGTGCTGGCGGCCCTCCCCGAATTTATCTTTCACGAGTCCCAACAGGGCTC 224204
Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGGGGG 9076
| || ||||| || |||| |||| | |||| |||||| |
Sbjct 224205 CGAAGAGTCTGTCTG-CAGTCCTCTCTACCCAGAGGACGAGGAAGACAGCTGGAAGCGTT 224263
Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136
| ||| | || |||| ||| | || || ||| |||| ||||||||| |||
Sbjct 224264 TCCATGCTCTGAGAATGAACATCTTGGGTCTAGCGCTCCCTCTGCTCATCATGGCCGTCT 224323
Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-A 9194
|||||| |||||||| ||| || | | |||| ||||| || ||| | | |
Sbjct 224324 GCTACTCTGGGATCATCAAAACCCTGCTGAGATGCCC-CAACA----GAAAAAAGTACAA 224378
Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254
||| || ||||||||| ||||| ||||| | | ||| || || |||| |||||||||
Sbjct 224379 GGCCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCGTTTTCTGGACCCCCTACAA 224438
Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGC 9313
| | | ||| || | | | ||| | | | | | | ||| ||||| |||||
Sbjct 224439 CCTGGTTCTCCTTCTCTCTGCTTTTCAAATGAACTTACTGGAGTACAG-CTGTG-AGCGC 224496
Query 9314 -GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372
| | ||||| ||||| | |||| | ||| ||||||||| ||||||||||||
Sbjct 224497 AGTAGACATCTGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTATACCCACTGCTGC 224556
Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCA 9413
|||||||| ||||||||||| || |||||||| | ||||||
Sbjct 224557 GTCAACCCTGTCATCTACGCCTTCGTGGGCGAGAGGTTCCA 224597
Score = 87.8 bits (96), Expect = 2e-12
Identities = 73/89 (82%), Gaps = 3/89 (3%)
Strand=Plus/Minus
Query 9317 GCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373
|||||| ||||||||||| | |||| | ||| ||||||||| ||| |||||||| |
Sbjct 178309 GCAGGGAGCTGGACATGGCCATTCAGGTGACCGAGGTGATCGCCTACACTCACTGCTGTG 178250
Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGC 9402
|||||||||||||||| | |||||||||
Sbjct 178249 TCAACCCCGTCATCTATGTCTTTGTGGGC 178221
Score = 86.0 bits (94), Expect = 7e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670
|||||||||||||| | ||||| | | ||||| ||||| | || |||| ||
Sbjct 295919 TACTCTCTGGTGTTCATCTTTGGTGTCGTGGGCAACCTGCTGGTAGTTCTCATCCTGATC 295978
Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730
|| | ||| ||||| | || |||||| |||||| |||| ||||| ||||| | |||
Sbjct 295979 AACTGCAAAAGGCTGAAGAGCATGACTGACATCTACCTGCTCAACTTGGCCATCTCCGAC 296038
Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
||||| | || |||||||||| || ||| |||||
Sbjct 296039 CTGCTTTTCCTTCTCACCCTCCCGTTCTGGGCTCACT 296075
>seq82
Length=8104705
Score = 165 bits (182), Expect = 1e-35
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045
||||| || | ||| || | ||||||||| ||||| || |||||||| |||||||||||
Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561
Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105
|| |||||||||||||| || |||||||||||||||||||| || |||||||| | ||
Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621
Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||| |||||||| ||| ||||| || ||||| |||||
Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 34662
>seq89
Length=7633750
Score = 145 bits (160), Expect = 9e-30
Identities = 131/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||| | | ||||||||
Sbjct 5836148 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTAGTGGAGGTGA 5836207
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| |||| |||| || | |||||||| || ||||
Sbjct 5836208 TGCCCCAGGCAGAGAACCACA------------GCCCAGATGTCAAGGAGCACGTGAACT 5836255
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||| ||||| |||||||| ||| || |||| ||||| |||
Sbjct 5836256 CCCTGGGGGAGAAGCTGAAGACCCTCAGACTGCGGCTCCGGCGCTGT 5836302
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||||||||| || || | |||||||| |||||||||||||| || || || |||||||
Sbjct 5838373 AGCTTCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5838432
Query 178522 TAGAAGCTTACATGACAACAAAAAT 178546
||||||| ||||||||| | || ||
Sbjct 5838433 TAGAAGCCTACATGACAGCGAAGAT 5838457
>seq394
Length=841001
Score = 132 bits (146), Expect = 6e-26
Identities = 172/235 (73%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967
|||||||||||||| | ||| | ||| || || || | | || || |||| | |||
Sbjct 665324 AGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATGC 665383
Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGT-AGGTGAGCAGCGAGTA 147026
| ||||||||| |||| ||| | | | ||| || ||||||| |||| ||||| | ||
Sbjct 665384 ATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATA 665443
Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086
|||| | ||| |||| || | |||| ||||||| | || ||||| ||||||| | |||
Sbjct 665444 GCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGCA 665503
Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141
|| ||||||| || || ||| |||||||| |||| ||||| || ||||||
Sbjct 665504 GGACAGCTCCCATTC-ACCTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGC 665557
>seq106
Length=6505572
Score = 102 bits (112), Expect = 1e-16
Identities = 176/249 (71%), Gaps = 9/249 (4%)
Strand=Plus/Minus
Query 146875 TTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGGGCTCCACGTG 146933
|||||||| ||||| | | || ||| || || ||||||||||||| ||||| | |||
Sbjct 5366087 TTGAGCTTTGGGAAAGCTTTTGG-TTCTTGTACAAGCTGAATTTTCAGTGGCTCAATGTG 5366029
Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993
|| ||||| | || || | | || ||| | |||||| | |||| ||| | ||
Sbjct 5366028 ATTAAGGTAAATATGTGCATTACGAAGAATGT--ATAAAGTCATCTGGCTGCAGGTCTGT 5365971
Query 146994 CACGTGGGCCACCATGT-AGGTGAGCAGCGAGTAGC--TGGCTATGTTGAAGGGGACCCC 147050
| ||| | | ||||| |||| ||||| | |||| ||| |||||||| || || ||
Sbjct 5365970 GATGTGTACAATCATGTAAGGTAAGCAGGGTATAGCAATGG--ATGTTGAAAGGCACGCC 5365913
Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTA 147110
|| ||||||| | || ||||| || |||||| ||| || |||||||| | || |||
Sbjct 5365912 CAAGCCCATGACTCCTGACCTATGATACAGCCAGCAGGACAGCTCCCCATTCACCTTGTA 5365853
Query 147111 AAACTGGCA 147119
|||| |||
Sbjct 5365852 GAACTAGCA 5365844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583396953991200
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