Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq14 105 6e-18
seq118 89.7 5e-13
seq13 86.0 6e-12
seq90 84.2 2e-11
>seq14
Length=21378024
Score = 105 bits (116), Expect = 6e-18
Identities = 157/219 (72%), Gaps = 3/219 (1%)
Strand=Plus/Minus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | || ||| || || ||||||||||| | | || || | || ||
Sbjct 6329940 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTC 6329881
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||| || ||||||||||||| |||||||| || | || | || |||||||| | |
Sbjct 6329880 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGT-CTT 6329822
Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
|| ||| || || | | | | | ||||| || | || ||||| | ||||| || |
Sbjct 6329821 GAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 6329762
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744
| ||||||| || |||||||| ||||||| ||| ||||
Sbjct 6329761 TGCCCGTCAGGGTCTTCACAAAGATCTGCA-TCTCTGCG 6329724
>seq118
Length=6029945
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| ||||||||||| || ||||| || | || || |||||| | ||||| || || ||
Sbjct 3917750 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTA 3917809
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
||| || |||| ||||| | | | | ||||| || |||| ||||| |||||
Sbjct 3917810 TCCTTGTTCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATA 3917869
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
|| || || |||| || |||||||| ||||||||| ||
Sbjct 3917870 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 3917908
>seq13
Length=21495731
Score = 86.0 bits (94), Expect = 6e-12
Identities = 151/216 (70%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| | || || ||| || || ||||||||||| | | || || || || ||
Sbjct 9191911 CACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTC 9191852
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||| ||||| |||||||||| ||||||| || | || | || ||||| || | |
Sbjct 9191851 TAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGT-CTT 9191793
Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
|| |||||| || | | | | | ||||| || | || ||||| | ||||| || |
Sbjct 9191792 GAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 9191733
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT-TCTG 35740
| || ||| || |||||||| ||||| || ||||
Sbjct 9191732 TGCCTATCAGGGTCTTCACAAAGATCTGAATCTCTG 9191697
>seq90
Length=7592057
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||||||| | || ||||| || || ||||| || | || ||| ||| | || |||
Sbjct 464128 ACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCC 464069
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| || ||||| |||| || ||||||||| | || | || ||||||||| |
Sbjct 464068 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 464009
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691
||||| ||| | | | | | ||||| || | ||||||||
Sbjct 464008 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTC 463965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450723259293640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |