Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14 105 6e-18 seq118 89.7 5e-13 seq13 86.0 6e-12 seq90 84.2 2e-11 >seq14 Length=21378024 Score = 105 bits (116), Expect = 6e-18 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||| || || ||||||||||| | | || || | || || Sbjct 6329940 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTC 6329881 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||| || ||||||||||||| |||||||| || | || | || |||||||| | | Sbjct 6329880 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGT-CTT 6329822 Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| || || | | | | | ||||| || | || ||||| | ||||| || | Sbjct 6329821 GAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 6329762 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 | ||||||| || |||||||| ||||||| ||| |||| Sbjct 6329761 TGCCCGTCAGGGTCTTCACAAAGATCTGCA-TCTCTGCG 6329724 >seq118 Length=6029945 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| || | || || |||||| | ||||| || || || Sbjct 3917750 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTA 3917809 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| || |||| ||||| | | | | ||||| || |||| ||||| ||||| Sbjct 3917810 TCCTTGTTCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATA 3917869 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || || || |||| || |||||||| ||||||||| || Sbjct 3917870 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 3917908 >seq13 Length=21495731 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| | || || ||| || || ||||||||||| | | || || || || || Sbjct 9191911 CACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTC 9191852 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||| ||||| |||||||||| ||||||| || | || | || ||||| || | | Sbjct 9191851 TAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGT-CTT 9191793 Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || |||||| || | | | | | ||||| || | || ||||| | ||||| || | Sbjct 9191792 GAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 9191733 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT-TCTG 35740 | || ||| || |||||||| ||||| || |||| Sbjct 9191732 TGCCTATCAGGGTCTTCACAAAGATCTGAATCTCTG 9191697 >seq90 Length=7592057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| || || ||||| || | || ||| ||| | || ||| Sbjct 464128 ACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCC 464069 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| |||| || ||||||||| | || | || ||||||||| | Sbjct 464068 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 464009 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 ||||| ||| | | | | | ||||| || | |||||||| Sbjct 464008 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTC 463965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450723259293640