Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq536 315 1e-80 seq260 205 1e-47 seq59 199 5e-46 seq131 188 1e-42 seq58 165 1e-35 seq64 129 8e-25 seq2 120 4e-22 seq3 116 5e-21 seq30 114 2e-20 seq128 95.1 2e-14 seq11673 91.5 2e-13 seq299 87.8 2e-12 >seq536 Length=337149 Score = 315 bits (348), Expect = 1e-80 Identities = 632/935 (68%), Gaps = 34/935 (4%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 ||||||||||| |||| || | |||| ||||||| | | ||||| |||||||||| Sbjct 201730 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATTT 201789 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| || || |||||||| ||||| | ||| ||||| | Sbjct 201790 TCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCT 201849 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA-TTCTGAAATC 39445 |||| || | ||| ||||| | | || | | || ||||| || | ||| | | | Sbjct 201850 CCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAGCA-TA 201908 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | |||||||| |||||||| ||||| ||||||| |||||||| || || || Sbjct 201909 AGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGC 201968 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || | || | || || || || ||||| | || || | | ||| | | ||| | Sbjct 201969 TTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTT 202028 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | ||||| || || ||| || | | ||||| | ||| | |||||| ||| Sbjct 202029 TCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAAG 202088 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 ||||| |||| ||||||||||| ||||| | ||| || ||||||||||| |||||||| Sbjct 202089 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 202148 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 || || || || |||||||| ||||||||||| | || Sbjct 202149 AGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTCC 202186 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTC 39802 | || ||||| || |||| | ||||| || | | || || | ||| | | | Sbjct 202187 ATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATGC 202246 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862 ||||| ||||||||||| ||||||||||||||||| | ||||| |||||| | Sbjct 202247 AAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAAT 202304 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 | |||| | ||||||| ||| || || || | |||||||||||||| ||||| Sbjct 202305 TCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGT 202364 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 |||||||| || || || || || || || |||| | ||||| |||||||| || ||| Sbjct 202365 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCT 202424 Query 39983 GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCC 40042 | |||| ||| ||||||| || || ||||| | ||||| || ||| | || ||| Sbjct 202425 TGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAAGCC 202484 Query 40043 AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCT 40102 | | || | |||||||||| ||| || || ||| | ||||| | || || Sbjct 202485 AGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCC 202543 Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 | || | | | || || |||||||||||||| || ||||| || || || |||| | | Sbjct 202544 CTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGC 202602 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | ||| || | | || || ||||| || || || Sbjct 202603 CGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637 >seq260 Length=2306558 Score = 205 bits (226), Expect = 1e-47 Identities = 609/934 (65%), Gaps = 14/934 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| |||| || | ||||| ||| || | | |||||| |||||| Sbjct 2179935 TTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCTCTCCCACCC 2179994 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || ||||| || ||||| || || ||| | ||| |||||| | | ||||| | Sbjct 2179995 TCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTAA-ATATTCT 2180053 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| | ||| | | | | || |||| || | | || | Sbjct 2180054 CCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATAA 2180113 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 | || | ||| || ||||| || || ||||||| || || || || ||| | Sbjct 2180114 ACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAACT 2180173 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||||| | | ||||| | ||| | | || || | | | ||| Sbjct 2180174 TCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTT 2180233 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| || || ||| || | | ||||| ||||| | ||| || ||| Sbjct 2180234 CTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAGT 2180293 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 || || ||| ||||||||||| ||||| | ||| | |||| | || |||||||| | Sbjct 2180294 CATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACTT--AGGCCAGGCATCA 2180351 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 || | || |||| | | ||||| | ||||||| || | |||||| | ||||| | Sbjct 2180352 ATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCA 2180411 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 | || |||| || |||| | |||| ||| | | || || | ||||| | | Sbjct 2180412 CAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAATGCA 2180471 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 || ||| ||||| ||||||||| ||||||||||||| || ||||| |||||| | | Sbjct 2180472 AGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAAATT 2180531 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| || || || || | |||||||||||||| |||| | Sbjct 2180532 CCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATACATTTCACAATGTA 2180587 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 |||||| | || || || || | || ||||| |||| |||||||| || || Sbjct 2180588 GTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCT 2180646 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | |||| ||| ||||||||||||| ||||| |||||||| || ||||| || || Sbjct 2180647 GGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAATTCA 2180706 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 | ||| ||||||||| ||| || | | ||| | | ||| || || | Sbjct 2180707 TAATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAGAATGTCCT 2180766 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || ||| | || || || |||| |||| || | || ||||| || | || | || Sbjct 2180767 TGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAGAAATCTGCC 2180826 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | ||| || ||||| | ||||| Sbjct 2180827 AAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860 >seq59 Length=10161055 Score = 199 bits (220), Expect = 5e-46 Identities = 568/867 (66%), Gaps = 22/867 (3%) Strand=Plus/Minus Query 39312 ACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTT 39371 |||| |||||||| | || || || || || | || || |||||||| || |||| Sbjct 9903270 ACATCACTCCCATCCTCTGATACTCGCCTAC-----TATCAAAGAAATTAGTCTTCCCTT 9903216 Query 39372 CCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTAT--AtttttttttAAA 39429 | |||| ||| |||| || |||| ||||| || || | | | || ||||| Sbjct 9903215 CTGATGAACCATTCCCCATAAAGACAAATGGATT--TTCCACTCTGAAAACCTTCTTAAA 9903158 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 | || ||| || | || ||||| || ||||| ||| | |||||| ||| Sbjct 9903157 GTCCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACA 9903098 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 ||| | || ||||| || | || | ||||| || || | ||| | ||| || || Sbjct 9903097 GTTCCTCCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGAC 9903038 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609 || | ||||| || ||||| || || |||| || | | | || | Sbjct 9903037 AGCATTGACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGA 9902978 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 ||| |||| | || ||| | |||| ||||| ||||| || || | ||| || ||||| Sbjct 9902977 CATCGGGCAG-CAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAA 9902919 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 |||||| |||||||| || | || ||||||||||||| | ||||| || ||||| Sbjct 9902918 TGTGAGGCCAGGCATCAGTTC-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGA 9902864 Query 39730 AAAGAAGATGCCTTC--TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||||||| || | || || || || | |||| | | || ||| | | || Sbjct 9902863 AAAGAAGATTTCTCCCGTAGTG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCT 9902806 Query 39788 TTATGTA---TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | |||| | || || || ||||||||||| || |||||||| |||| Sbjct 9902805 TTGTCCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCA 9902746 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || ||| | ||||| | | | || | || ||||| || | || || | ||| Sbjct 9902745 ATGGCACTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGA 9902686 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 | ||| ||||| ||||| |||||||| || || | || || || | ||||| | ||| Sbjct 9902685 CCATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCT 9902626 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || ||||||| |||||| | ||||| | | ||| ||||||| | |||| |||||| Sbjct 9902625 TCTATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCA 9902566 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 | || |||| || || | |||||| ||||||||| ||| || || ||| Sbjct 9902565 CGTGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCC 9902506 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | || || | | || || || | ||| || || || |||||||| || |||||||| Sbjct 9902505 TGCCGGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCG 9902446 Query 40145 GCCTTTTTGTACATGTTCCATATATCA 40171 || || || ||||| | ||| |||||| Sbjct 9902445 GCTTTCTTATACATTTGCCAAATATCA 9902419 >seq131 Length=5549739 Score = 188 bits (208), Expect = 1e-42 Identities = 325/476 (68%), Gaps = 31/476 (7%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 |||||||| ||| ||||||| |||||||| |||| |||| ||| |||| | || Sbjct 3233325 TGTTTAAA-ATTCAGCAGGCAAAGTCACAGTGTAAACCCTTGATTCTGATAATAAGTTAA 3233267 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || ||||||||||| |||| ||||| | ||||| Sbjct 3233266 TTGGAAAATGTGAGGCCAG--------------------------AATATTGACACAAAA 3233233 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC---AACAAGTCTCTCTCCGTAA 39778 || |||||||||||||| ||||| | | ||||| || |||| || | | ||| Sbjct 3233232 GAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAAAACATGTTCTTGTAGGTAG 3233173 Query 39779 CTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 | | | | || ||||| || |||||||| |||||| |||| ||||||||||| Sbjct 3233172 CCTCTTTG-TTCCCAATCCAACTCAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATC 3233114 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 |||| |||||||| ||||| | | |||| | | |||||||| || || || || Sbjct 3233113 CTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATA 3233054 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | ||||| ||||||| ||||| |||||||| | || | ||| || || || ||||| Sbjct 3233053 AGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGAAGCCATAGAAACAG 3232994 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | |||| |||||||| || ||| | |||| |||| ||||||||||||| |||| Sbjct 3232993 CCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAATTTTCATTTGCTATG 3232934 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG 40074 |||||||| || ||||| || |||| ||| | ||||||||| ||| || || Sbjct 3232933 CCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATATCGTTCCTCAGG 3232878 >seq58 Length=10378366 Score = 165 bits (182), Expect = 1e-35 Identities = 488/748 (65%), Gaps = 37/748 (5%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 ||||| || || || || ||| | || | ||||| || || ||||| || ||||||| | Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || ||||| ||||| | |||| ||||| | | | | | | || | || | | Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGATAGAGCCCAGT 1968632 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 | || | || ||||| |||||||| ||| | ||||||| || ||||| Sbjct 1968633 TTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCATC 1968692 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || ||||| || || || | |||| || || ||||| | ||| || || | Sbjct 1968693 CCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAATTG 1968752 Query 39557 GTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAG 39616 | |||| | ||| || || | | ||| || | || | ||| |||||| || Sbjct 1968753 ATAATTAC---TTTTATCCTCTTCTCCCACAGTG--TGTAGCAAGTATTTGAACATTGAG 1968807 Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| || |||| |||||||| ||||| | ||| || ||||||||||| Sbjct 1968808 CAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGA 1968856 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCC--AAAATATGGCAGCAAAAGATCCAGAAAAGA 39734 |||||||| || | | || || || | || |||| | |||||||| |||||||||| Sbjct 1968857 CCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGA 1968916 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA 39794 |||| |||| || ||||| || ||| |||||| || | | | | | || Sbjct 1968917 AGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCACAAATAG----ACTTTTTA 1968972 Query 39795 TCCACTTCTG-TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 || ||| | || |||| | ||||||||| ||||||||||| |||| | |||| Sbjct 1968973 TC-----CTGATTCCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTG 1969027 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 |||| | | | |||||| | || |||| |||| | || | | ||| || ||| Sbjct 1969028 AAGATAAATTCTTTTTCTTTGGAATTTTTA----ATGTGACAATAAGGAAACTGTATATT 1969083 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 | ||||| || ||| | || || || || ||||| || ||||| ||||| |||||| Sbjct 1969084 ACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATT 1969143 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || | ||| | |||| | | |||| ||||||| | ||| ||||||| | || Sbjct 1969144 TGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTATTATGCCATCAC---CTGCT 1969200 Query 40034 AAAAATGCCAATACATGTTTAATAAAAT 40061 |||| |||| |||||| ||||||| Sbjct 1969201 AAAA--GCCAGAACATGTGCTATAAAAT 1969226 >seq64 Length=9676502 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | ||||||||| |||||||||||||| || || || || ||||| | Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 39759 CAACAA 39764 | |||| Sbjct 6351427 CTACAA 6351422 >seq2 Length=46620681 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||||||||| |||||||| ||||| | ||| || Sbjct 41377775 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 41377716 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || ||||| || || ||||| || Sbjct 41377715 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 41377656 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 41377655 ACCACTCTTTCCCC 41377642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||| ||||| |||||||| || || |||| ||||| ||| ||||| ||||| |||||| | Sbjct 41366934 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 41366875 Query 40174 ATATTGTATTGGAAAAATAACAAATC 40199 || || ||||||||||| ||||||| Sbjct 41366874 GTACTGGATTGGAAAAATGACAAATC 41366849 >seq3 Length=41493964 Score = 116 bits (128), Expect = 5e-21 Identities = 213/308 (69%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 37395 TTGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 37454 ||| ||||| | | ||| |||||| | || |||| | | || ||||| ||||||| ||| Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291 Query 37455 GCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCC 37514 || | |||| || ||| || ||| ||| ||| | || | || |||||||| || Sbjct 8287292 ACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCC 8287351 Query 37515 CCTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACC 37571 |||||||||||||| || || || |||||||||| || |||| || || || Sbjct 8287352 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCC 8287411 Query 37572 CGATCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTT 37631 || | ||||||||||||||||| || || | || ||| |||| |||||||| Sbjct 8287412 AGAACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTT 8287471 Query 37632 AATCAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATAT 37689 | ||| | |||||||| ||| | | ||||||| || || || || | || || Sbjct 8287472 CA-CAA-GGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAG 8287529 Query 37690 CCCGCGGC 37697 || ||||| Sbjct 8287530 CCTGCGGC 8287537 >seq30 Length=14751797 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || ||||| ||||| || ||||| | || Sbjct 820284 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 820343 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 820344 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 820403 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 820404 TTTCTTACACCAT 820416 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| |||||||| ||||| || || || | || ||||| ||||| | Sbjct 843142 CACCACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCA 843201 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 || ||||||||||| || | ||||| | || || ||| |||| ||||| | |||| Sbjct 843202 AGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTAT 843261 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | || |||||||| | |||| ||||| || |||||||||| Sbjct 843262 CTAGTTCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCATGG 843312 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| || || | || | ||||| ||||| || || || | Sbjct 825642 GAACCCTCATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAGCTGGCTTCCAGG 825701 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| |||||| | || || ||| |||| || Sbjct 825702 GCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCA 825761 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || ||||| |||||||||| |||||||||||||| || ||||| Sbjct 825762 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCAATTCCAATAGGG 825821 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 825822 CGATGGCGTTTATTTGA 825838 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 || |||||||| || ||||| |||||||||||||| | || ||||| |||| || | Sbjct 832091 ACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGC 832150 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || |||||||| || || || | ||| || ||||| | || || ||||||| ||| Sbjct 832151 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 832210 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 832211 TCCAGGTAAATAGC 832224 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 831386 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 831445 Query 69577 CA 69578 || Sbjct 831446 CA 831447 >seq128 Length=5608787 Score = 95.1 bits (104), Expect = 2e-14 Identities = 282/432 (65%), Gaps = 36/432 (8%) Strand=Plus/Plus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| ||||| | || | | ||||| || ||| ||||| |||||||||| | || Sbjct 5393190 TGTTTGAACATCATGCTGTCAAAGTC-CA--GTAAATCCTCACCTCTACTAATAAGTTTA 5393246 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || ||||| ||||| |||||| || | | || ||||| || ||||||| ||||| Sbjct 5393247 TTGGAAAAAGTGAGGTCAGGCACCAGTCTT-GTTTCTTGAGACAGAATATGGATACAAAA 5393305 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || ||| | ||| | || |||| | ||||| | ||| | | ||||| Sbjct 5393306 GAAGCAGGAGAGA---TTCCCCCTACAGAGGCAAAGGTTACACCTGT-TCTCC------- 5393354 Query 39782 GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 ||||| | || || | ||||||||||| | |||| ||| Sbjct 5393355 ------------ATCCAATGAAAGGCTCAGGCTGCTTTCTTCTTCATACAAAGCA----- 5393397 Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 || || | ||| |||||| | | | |||| | |||||||| | | || | Sbjct 5393398 TCAATGGTATTGAAGAGAAATTCTCTTTCTTTGGGATCTTTAATGGAAATGTCAGGAAGG 5393457 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTA-AAAACATCT 39960 ||||||||| |||| ||||| |||||| | || || || || || || || | | || | Sbjct 5393458 AGACTATACCTTTCAGAATGTATGTTTGCCATGGCAATTTGGAAGCCATAGATAGCAATT 5393517 Query 39961 ---TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 ||||| |||||||| |||||| | | ||| ||| ||||| |||||||| ||||| Sbjct 5393518 GTGGGCTTCTGTAATTTGAACCTCTTGGCTAGATCCTTCTGCCAACTTTTCATTTACTAT 5393577 Query 40018 TCCATCACTAGC 40029 |||| ||| || Sbjct 5393578 GCCATTACTTGC 5393589 >seq11673 Length=1157 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TC--TTGTGACATAACTCCCATTT 39326 ||||||||||| |||| || | |||| ||||||| || | |||||| |||||||| Sbjct 220 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCACTCCCATCC 279 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 280 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 339 Query 39387 CCATGAAATCAAACGGATT 39405 |||| || ||||| ||||| Sbjct 340 CCATAAAGTCAAATGGATT 358 >seq299 Length=1791600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/206 (72%), Gaps = 14/206 (7%) Strand=Plus/Minus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || || |||||||| |||||||| || |||| | ||| || | ||| || || |||||| Sbjct 1082830 TCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGCA 1082771 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTG--CTGCAAATGCAACAAGTCTCTCTCC-- 39774 |||||||| || ||||| || ||||| || | ||| | || || | ||| || || Sbjct 1082770 AAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTG--ATGGCCACCACTCTTTCCCCAA 1082713 Query 39775 --GTA-AC-TTGTATCATTATGTATCCACTTCTGTGCCCAATCAGC-TTTCTTCTTTACA 39829 ||| || || |||| || |||||| | | ||||| || || ||| ||||| || Sbjct 1082712 AAGTAGACTTTCTATC--TA-CTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAACG 1082656 Query 39830 CAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||||| || |||||||| Sbjct 1082655 TATGGCATTGTTTTAATTGCATTAAA 1082630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686801616468120