Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq536 315 1e-80
seq260 205 1e-47
seq59 199 5e-46
seq131 188 1e-42
seq58 165 1e-35
seq64 129 8e-25
seq2 120 4e-22
seq3 116 5e-21
seq30 114 2e-20
seq128 95.1 2e-14
seq11673 91.5 2e-13
seq299 87.8 2e-12
>seq536
Length=337149
Score = 315 bits (348), Expect = 1e-80
Identities = 632/935 (68%), Gaps = 34/935 (4%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326
||||||||||| |||| || | |||| ||||||| | | ||||| ||||||||||
Sbjct 201730 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATTT 201789
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| || || || || || | ||||| || || |||||||| ||||| | ||| ||||| |
Sbjct 201790 TCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCT 201849
Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA-TTCTGAAATC 39445
|||| || | ||| ||||| | | || | | || ||||| || | ||| | | |
Sbjct 201850 CCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAGCA-TA 201908
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| |||||||| |||||||| ||||| ||||||| |||||||| || || ||
Sbjct 201909 AGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGC 201968
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|| | || | || || || || ||||| | || || | | ||| | | ||| |
Sbjct 201969 TTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTT 202028
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625
| ||||| || || ||| || | | ||||| | ||| | |||||| |||
Sbjct 202029 TCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAAG 202088
Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685
||||| |||| ||||||||||| ||||| | ||| || ||||||||||| ||||||||
Sbjct 202089 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 202148
Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745
|| || || || |||||||| ||||||||||| | ||
Sbjct 202149 AGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTCC 202186
Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTC 39802
| || ||||| || |||| | ||||| || | | || || | ||| | | |
Sbjct 202187 ATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATGC 202246
Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862
||||| ||||||||||| ||||||||||||||||| | ||||| |||||| |
Sbjct 202247 AAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAAT 202304
Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922
| |||| | ||||||| ||| || || || | |||||||||||||| |||||
Sbjct 202305 TCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGT 202364
Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
|||||||| || || || || || || || |||| | ||||| |||||||| || |||
Sbjct 202365 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCT 202424
Query 39983 GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCC 40042
| |||| ||| ||||||| || || ||||| | ||||| || ||| | || |||
Sbjct 202425 TGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAAGCC 202484
Query 40043 AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCT 40102
| | || | |||||||||| ||| || || ||| | ||||| | || ||
Sbjct 202485 AGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCC 202543
Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162
| || | | | || || |||||||||||||| || ||||| || || || |||| | |
Sbjct 202544 CTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGC 202602
Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197
| ||| || | | || || ||||| || || ||
Sbjct 202603 CGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637
>seq260
Length=2306558
Score = 205 bits (226), Expect = 1e-47
Identities = 609/934 (65%), Gaps = 14/934 (1%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326
|||| |||||| |||| || | ||||| ||| || | | |||||| ||||||
Sbjct 2179935 TTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCTCTCCCACCC 2179994
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| || || ||||| || ||||| || || ||| | ||| |||||| | | ||||| |
Sbjct 2179995 TCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTAA-ATATTCT 2180053
Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446
|||| || ||||| | ||| | | | | || |||| || | | || |
Sbjct 2180054 CCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATAA 2180113
Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506
| || | ||| || ||||| || || ||||||| || || || || ||| |
Sbjct 2180114 ACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAACT 2180173
Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566
| || || | ||||||| | | ||||| | ||| | | || || | | | |||
Sbjct 2180174 TCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTT 2180233
Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626
| ||||| || || ||| || | | ||||| ||||| | ||| || |||
Sbjct 2180234 CTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAGT 2180293
Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686
|| || ||| ||||||||||| ||||| | ||| | |||| | || |||||||| |
Sbjct 2180294 CATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACTT--AGGCCAGGCATCA 2180351
Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746
|| | || |||| | | ||||| | ||||||| || | |||||| | ||||| |
Sbjct 2180352 ATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCA 2180411
Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803
| || |||| || |||| | |||| ||| | | || || | ||||| | |
Sbjct 2180412 CAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAATGCA 2180471
Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863
|| ||| ||||| ||||||||| ||||||||||||| || ||||| |||||| | |
Sbjct 2180472 AGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAAATT 2180531
Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923
|||| | |||||| || || || || | |||||||||||||| |||| |
Sbjct 2180532 CCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATACATTTCACAATGTA 2180587
Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983
|||||| | || || || || | || ||||| |||| |||||||| || ||
Sbjct 2180588 GTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCT 2180646
Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043
| |||| ||| ||||||||||||| ||||| |||||||| || ||||| || ||
Sbjct 2180647 GGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAATTCA 2180706
Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103
| ||| ||||||||| ||| || | | ||| | | ||| || || |
Sbjct 2180707 TAATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAGAATGTCCT 2180766
Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163
| || ||| | || || || |||| |||| || | || ||||| || | || | ||
Sbjct 2180767 TGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAGAAATCTGCC 2180826
Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197
| |||||| | ||| || ||||| | |||||
Sbjct 2180827 AAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860
>seq59
Length=10161055
Score = 199 bits (220), Expect = 5e-46
Identities = 568/867 (66%), Gaps = 22/867 (3%)
Strand=Plus/Minus
Query 39312 ACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTT 39371
|||| |||||||| | || || || || || | || || |||||||| || ||||
Sbjct 9903270 ACATCACTCCCATCCTCTGATACTCGCCTAC-----TATCAAAGAAATTAGTCTTCCCTT 9903216
Query 39372 CCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTAT--AtttttttttAAA 39429
| |||| ||| |||| || |||| ||||| || || | | | || |||||
Sbjct 9903215 CTGATGAACCATTCCCCATAAAGACAAATGGATT--TTCCACTCTGAAAACCTTCTTAAA 9903158
Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489
| || ||| || | || ||||| || ||||| ||| | |||||| |||
Sbjct 9903157 GTCCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACA 9903098
Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549
||| | || ||||| || | || | ||||| || || | ||| | ||| || ||
Sbjct 9903097 GTTCCTCCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGAC 9903038
Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609
|| | ||||| || ||||| || || |||| || | | | || |
Sbjct 9903037 AGCATTGACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGA 9902978
Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669
||| |||| | || ||| | |||| ||||| ||||| || || | ||| || |||||
Sbjct 9902977 CATCGGGCAG-CAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAA 9902919
Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729
|||||| |||||||| || | || ||||||||||||| | ||||| || |||||
Sbjct 9902918 TGTGAGGCCAGGCATCAGTTC-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGA 9902864
Query 39730 AAAGAAGATGCCTTC--TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787
||||||||| || | || || || || | |||| | | || ||| | | ||
Sbjct 9902863 AAAGAAGATTTCTCCCGTAGTG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCT 9902806
Query 39788 TTATGTA---TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844
|| | |||| | || || || ||||||||||| || |||||||| ||||
Sbjct 9902805 TTGTCCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCA 9902746
Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904
|| ||| | ||||| | | | || | || ||||| || | || || | |||
Sbjct 9902745 ATGGCACTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGA 9902686
Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964
| ||| ||||| ||||| |||||||| || || | || || || | ||||| | |||
Sbjct 9902685 CCATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCT 9902626
Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024
|| ||||||| |||||| | ||||| | | ||| ||||||| | |||| ||||||
Sbjct 9902625 TCTATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCA 9902566
Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084
| || |||| || || | |||||| ||||||||| ||| || || |||
Sbjct 9902565 CGTGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCC 9902506
Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144
| || || | | || || || | ||| || || || |||||||| || ||||||||
Sbjct 9902505 TGCCGGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCG 9902446
Query 40145 GCCTTTTTGTACATGTTCCATATATCA 40171
|| || || ||||| | ||| ||||||
Sbjct 9902445 GCTTTCTTATACATTTGCCAAATATCA 9902419
>seq131
Length=5549739
Score = 188 bits (208), Expect = 1e-42
Identities = 325/476 (68%), Gaps = 31/476 (7%)
Strand=Plus/Minus
Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661
|||||||| ||| ||||||| |||||||| |||| |||| ||| |||| | ||
Sbjct 3233325 TGTTTAAA-ATTCAGCAGGCAAAGTCACAGTGTAAACCCTTGATTCTGATAATAAGTTAA 3233267
Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721
|| ||||||||||| |||| ||||| | |||||
Sbjct 3233266 TTGGAAAATGTGAGGCCAG--------------------------AATATTGACACAAAA 3233233
Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC---AACAAGTCTCTCTCCGTAA 39778
|| |||||||||||||| ||||| | | ||||| || |||| || | | |||
Sbjct 3233232 GAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAAAACATGTTCTTGTAGGTAG 3233173
Query 39779 CTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838
| | | | || ||||| || |||||||| |||||| |||| |||||||||||
Sbjct 3233172 CCTCTTTG-TTCCCAATCCAACTCAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATC 3233114
Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898
|||| |||||||| ||||| | | |||| | | |||||||| || || || ||
Sbjct 3233113 CTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATA 3233054
Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958
| ||||| ||||||| ||||| |||||||| | || | ||| || || || |||||
Sbjct 3233053 AGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGAAGCCATAGAAACAG 3232994
Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018
| |||| |||||||| || ||| | |||| |||| ||||||||||||| ||||
Sbjct 3232993 CCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAATTTTCATTTGCTATG 3232934
Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG 40074
|||||||| || ||||| || |||| ||| | ||||||||| ||| || ||
Sbjct 3232933 CCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATATCGTTCCTCAGG 3232878
>seq58
Length=10378366
Score = 165 bits (182), Expect = 1e-35
Identities = 488/748 (65%), Gaps = 37/748 (5%)
Strand=Plus/Plus
Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376
||||| || || || || ||| | || | ||||| || || ||||| || ||||||| |
Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572
Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436
|| ||||| ||||| | |||| ||||| | | | | | | || | || | |
Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGATAGAGCCCAGT 1968632
Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496
| || | || ||||| |||||||| ||| | ||||||| || |||||
Sbjct 1968633 TTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCATC 1968692
Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556
|| ||||| || || || | |||| || || ||||| | ||| || || |
Sbjct 1968693 CCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAATTG 1968752
Query 39557 GTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAG 39616
| |||| | ||| || || | | ||| || | || | ||| |||||| ||
Sbjct 1968753 ATAATTAC---TTTTATCCTCTTCTCCCACAGTG--TGTAGCAAGTATTTGAACATTGAG 1968807
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
||||| || |||| |||||||| ||||| | ||| || |||||||||||
Sbjct 1968808 CAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGA 1968856
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCC--AAAATATGGCAGCAAAAGATCCAGAAAAGA 39734
|||||||| || | | || || || | || |||| | |||||||| ||||||||||
Sbjct 1968857 CCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGA 1968916
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA 39794
|||| |||| || ||||| || ||| |||||| || | | | | | ||
Sbjct 1968917 AGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCACAAATAG----ACTTTTTA 1968972
Query 39795 TCCACTTCTG-TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
|| ||| | || |||| | ||||||||| ||||||||||| |||| | ||||
Sbjct 1968973 TC-----CTGATTCCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTG 1969027
Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913
|||| | | | |||||| | || |||| |||| | || | | ||| || |||
Sbjct 1969028 AAGATAAATTCTTTTTCTTTGGAATTTTTA----ATGTGACAATAAGGAAACTGTATATT 1969083
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
| ||||| || ||| | || || || || ||||| || ||||| ||||| ||||||
Sbjct 1969084 ACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATT 1969143
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| | ||| | |||| | | |||| ||||||| | ||| ||||||| | ||
Sbjct 1969144 TGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTATTATGCCATCAC---CTGCT 1969200
Query 40034 AAAAATGCCAATACATGTTTAATAAAAT 40061
|||| |||| |||||| |||||||
Sbjct 1969201 AAAA--GCCAGAACATGTGCTATAAAAT 1969226
>seq64
Length=9676502
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || |
Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | ||||||||| |||||||||||||| || || || || ||||| |
Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428
Query 39759 CAACAA 39764
| ||||
Sbjct 6351427 CTACAA 6351422
>seq2
Length=46620681
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||||||||| |||||||| ||||| | ||| ||
Sbjct 41377775 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 41377716
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || ||||| || || ||||| ||
Sbjct 41377715 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 41377656
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 41377655 ACCACTCTTTCCCC 41377642
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173
||| ||||| |||||||| || || |||| ||||| ||| ||||| ||||| |||||| |
Sbjct 41366934 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 41366875
Query 40174 ATATTGTATTGGAAAAATAACAAATC 40199
|| || ||||||||||| |||||||
Sbjct 41366874 GTACTGGATTGGAAAAATGACAAATC 41366849
>seq3
Length=41493964
Score = 116 bits (128), Expect = 5e-21
Identities = 213/308 (69%), Gaps = 7/308 (2%)
Strand=Plus/Plus
Query 37395 TTGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 37454
||| ||||| | | ||| |||||| | || |||| | | || ||||| ||||||| |||
Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291
Query 37455 GCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCC 37514
|| | |||| || ||| || ||| ||| ||| | || | || |||||||| ||
Sbjct 8287292 ACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCC 8287351
Query 37515 CCTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACC 37571
|||||||||||||| || || || |||||||||| || |||| || || ||
Sbjct 8287352 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCC 8287411
Query 37572 CGATCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTT 37631
|| | ||||||||||||||||| || || | || ||| |||| ||||||||
Sbjct 8287412 AGAACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTT 8287471
Query 37632 AATCAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATAT 37689
| ||| | |||||||| ||| | | ||||||| || || || || | || ||
Sbjct 8287472 CA-CAA-GGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAG 8287529
Query 37690 CCCGCGGC 37697
|| |||||
Sbjct 8287530 CCTGCGGC 8287537
>seq30
Length=14751797
Score = 114 bits (126), Expect = 2e-20
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||| || ||||| ||||| || ||||| | ||
Sbjct 820284 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 820343
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| ||||| || ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 820344 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 820403
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 820404 TTTCTTACACCAT 820416
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| |||| ||| |||||||| ||||| || || || | || ||||| ||||| |
Sbjct 843142 CACCACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCA 843201
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
|| ||||||||||| || | ||||| | || || ||| |||| ||||| | ||||
Sbjct 843202 AGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTAT 843261
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| ||| | || |||||||| | |||| ||||| || ||||||||||
Sbjct 843262 CTAGTTCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCATGG 843312
Score = 113 bits (124), Expect = 6e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | ||| |||||||| || || | || | ||||| ||||| || || || |
Sbjct 825642 GAACCCTCATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAGCTGGCTTCCAGG 825701
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
|| || |||||||| ||||| || |||| |||||| | || || ||| |||| ||
Sbjct 825702 GCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCA 825761
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126
|| ||||| | || ||||| |||||||||| |||||||||||||| || |||||
Sbjct 825762 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCAATTCCAATAGGG 825821
Query 69127 CTATGTCTCTTATTTGA 69143
| ||| | ||||||||
Sbjct 825822 CGATGGCGTTTATTTGA 825838
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
|| |||||||| || ||||| |||||||||||||| | || ||||| |||| || |
Sbjct 832091 ACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGC 832150
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
|| || |||||||| || || || | ||| || ||||| | || || ||||||| |||
Sbjct 832151 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 832210
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 832211 TCCAGGTAAATAGC 832224
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 831386 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 831445
Query 69577 CA 69578
||
Sbjct 831446 CA 831447
>seq128
Length=5608787
Score = 95.1 bits (104), Expect = 2e-14
Identities = 282/432 (65%), Gaps = 36/432 (8%)
Strand=Plus/Plus
Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661
||||| ||||| | || | | ||||| || ||| ||||| |||||||||| | ||
Sbjct 5393190 TGTTTGAACATCATGCTGTCAAAGTC-CA--GTAAATCCTCACCTCTACTAATAAGTTTA 5393246
Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721
|| ||||| ||||| |||||| || | | || ||||| || ||||||| |||||
Sbjct 5393247 TTGGAAAAAGTGAGGTCAGGCACCAGTCTT-GTTTCTTGAGACAGAATATGGATACAAAA 5393305
Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781
|| ||| | ||| | || |||| | ||||| | ||| | | |||||
Sbjct 5393306 GAAGCAGGAGAGA---TTCCCCCTACAGAGGCAAAGGTTACACCTGT-TCTCC------- 5393354
Query 39782 GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841
||||| | || || | ||||||||||| | |||| |||
Sbjct 5393355 ------------ATCCAATGAAAGGCTCAGGCTGCTTTCTTCTTCATACAAAGCA----- 5393397
Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901
|| || | ||| |||||| | | | |||| | |||||||| | | || |
Sbjct 5393398 TCAATGGTATTGAAGAGAAATTCTCTTTCTTTGGGATCTTTAATGGAAATGTCAGGAAGG 5393457
Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTA-AAAACATCT 39960
||||||||| |||| ||||| |||||| | || || || || || || || | | || |
Sbjct 5393458 AGACTATACCTTTCAGAATGTATGTTTGCCATGGCAATTTGGAAGCCATAGATAGCAATT 5393517
Query 39961 ---TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017
||||| |||||||| |||||| | | ||| ||| ||||| |||||||| |||||
Sbjct 5393518 GTGGGCTTCTGTAATTTGAACCTCTTGGCTAGATCCTTCTGCCAACTTTTCATTTACTAT 5393577
Query 40018 TCCATCACTAGC 40029
|||| ||| ||
Sbjct 5393578 GCCATTACTTGC 5393589
>seq11673
Length=1157
Score = 91.5 bits (100), Expect = 2e-13
Identities = 105/139 (76%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TC--TTGTGACATAACTCCCATTT 39326
||||||||||| |||| || | |||| ||||||| || | |||||| ||||||||
Sbjct 220 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCACTCCCATCC 279
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| || || || || || | ||||| || || ||||| || ||||| | ||| ||||| |
Sbjct 280 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 339
Query 39387 CCATGAAATCAAACGGATT 39405
|||| || ||||| |||||
Sbjct 340 CCATAAAGTCAAATGGATT 358
>seq299
Length=1791600
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/206 (72%), Gaps = 14/206 (7%)
Strand=Plus/Minus
Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718
|| || |||||||| |||||||| || |||| | ||| || | ||| || || ||||||
Sbjct 1082830 TCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGCA 1082771
Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTG--CTGCAAATGCAACAAGTCTCTCTCC-- 39774
|||||||| || ||||| || ||||| || | ||| | || || | ||| || ||
Sbjct 1082770 AAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTG--ATGGCCACCACTCTTTCCCCAA 1082713
Query 39775 --GTA-AC-TTGTATCATTATGTATCCACTTCTGTGCCCAATCAGC-TTTCTTCTTTACA 39829
||| || || |||| || |||||| | | ||||| || || ||| ||||| ||
Sbjct 1082712 AAGTAGACTTTCTATC--TA-CTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAACG 1082656
Query 39830 CAAGGCATTGTTTCTATAGCATTAAA 39855
| |||||||||| || ||||||||
Sbjct 1082655 TATGGCATTGTTTTAATTGCATTAAA 1082630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686801616468120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |