Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq22 100 3e-16 seq64 91.5 2e-13 seq5 91.5 2e-13 seq2 84.2 2e-11 >seq22 Length=17878332 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| ||||||||||||| || || ||||| || || Sbjct 15453332 GTGAAGATGTATCGAGGGCTAGCAGAATCCTTGCCACCATGTAGGCGGGTACCAAACTGA 15453391 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | || | |||||||||||| || ||| |||||||| || |||||||| |||| Sbjct 15453392 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGA 15453449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | |||||||||||| || || || |||||||| Sbjct 15453332 GTGAAGATGTATCGAGGGCTAGCAGAATCCTTGCCACCATGTAGGCGGGTACCAAACTGA 15453391 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||| | | |||||| || || ||| ||||| ||||||||||||||||| Sbjct 15453392 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATT 15453447 >seq64 Length=9676502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | | || |||||| |||||||| || || ||| |||||||| Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 6351425 ACAACACGTT 6351416 >seq5 Length=30734500 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | || || ||||| |||||||| ||||| ||||||||||| Sbjct 17169913 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGC 17169972 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||||| ||||||||||||||||| Sbjct 17169973 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTTCCCACGAAGTTCTGAGCCAAATTCACG 17170032 Query 152149 ATCGT 152153 || || Sbjct 17170033 ATAGT 17170037 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||||||||||| ||||||||| ||| || || || || || Sbjct 17169913 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGC 17169972 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||| ||||| |||||||| || || Sbjct 17169973 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTTCCCACGAAGTTCTGAGCCAAATTCACG 17170032 Query 117425 ATCGT 117429 || || Sbjct 17170033 ATAGT 17170037 >seq2 Length=46620681 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| |||| |||||| ||||| | || |||||||| || || | ||||| Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658 Query 74890 CGAC 74893 | || Sbjct 41377657 CCAC 41377654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547130613783400