Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 149 7e-31 seq126 140 4e-28 seq90 131 2e-25 seq455 122 1e-22 seq26 120 3e-22 seq118 114 1e-20 seq6 98.7 1e-15 seq93 96.9 4e-15 seq30 93.3 5e-14 seq128 89.7 6e-13 seq73 89.7 6e-13 seq1607 87.8 2e-12 seq145 87.8 2e-12 seq22 86.0 7e-12 >seq14 Length=21378024 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || |||||||| ||||||||||| || || || || ||| Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || || || ||||||| || || || |||| || || Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | || || || ||||| Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 6329957 >seq126 Length=5838822 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | || Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || |||||||| ||||||||||| || || || || ||| Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||||||||| ||||| || || || || ||||||| | || || |||| || | Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | || || || ||||| Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 680964 >seq90 Length=7592057 Score = 131 bits (144), Expect = 2e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 ||||| ||| | |||| | ||||| ||| | ||||| || || || ||||||||||| Sbjct 463965 GAGGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGC 464024 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || |||||||||||| | || || ||||| || ||||| || || |||| || ||| Sbjct 464025 ATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACC 464084 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 || | ||||| ||| |||| |||||||||||||| ||| | ||| |||| Sbjct 464085 CTGTCTGACTACAATATCCAGAAGGAATCCACTCTGCATTTGGTCCTGCG 464134 >seq455 Length=570085 Score = 122 bits (134), Expect = 1e-22 Identities = 160/220 (73%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || |||| || |||||||||||||| ||||||| | Sbjct 193464 ATGCAGATTTTCATAAA-ACCCTTATGGGGAAGACTATTACTCTCAAGGTTGAACCTT-- 193520 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | |||| | || || || || ||| | ||||| ||||||||||| || ||| Sbjct 193521 --TACTATAGAAAATATAAAAGCCAAGATCCAGAATAAGGAAGGAATTCCTCCTGATCAG 193578 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || |||| || ||||||||||||||||| || |||| |||||| | | ||||| || Sbjct 193579 CAAAGTCTGATCTTTGCTGGTAAGCAACTAGAAGATGGACGTACCTTGTCTGACTACAAC 193638 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 | | ||||| ||||| |||||||| || || | |||| Sbjct 193639 ATTTAGAAGGAGTCCACCCTTCATCTTGTTCTGAGGCTTC 193678 >seq26 Length=15501076 Score = 120 bits (132), Expect = 3e-22 Identities = 163/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| | ||||||||||| | |||||||| ||| Sbjct 10002039 ATGCAGATTTTCGTAAAAACCCTTACAGAGAAGACTATTACAATGGAGGTTGAACCAG-- 10001982 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | |||| | ||||| || || ||||| ||||| ||||||||||| | || Sbjct 10001981 -ATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTAATCAT 10001923 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||| ||||||| ||||||||| || ||| ||||| | ||||| || Sbjct 10001922 CAAAGACTAATCTTTGCTGATAAGCAACTGGAAGATTGACGTACTGAGTCTGACTACAAC 10001863 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| ||||||| || || | ||| ||||| Sbjct 10001862 ATTCAGAAGGAGTCCACCTTTCATCTGGTGCTGAGGCTTAATGGTGG 10001816 >seq118 Length=6029945 Score = 114 bits (126), Expect = 1e-20 Identities = 151/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAG 27463 |||||| |||||||| ||||| || || ||||||||||| || | ||| | ||| ||| Sbjct 3917905 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGATGGAGCTCA- 3917847 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| | ||||| ||| |||||||||| | |||| || || || |||||||| |||| Sbjct 3917846 GTGACACCATTGAGAATGTGAAGGCTAAGAACAAGGATAAAGAAGGCATTCCTCCTGACC 3917787 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT- 27582 || || | || || ||||| || ||||| || || |||| | || || | || ||| Sbjct 3917786 AGTAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGA-TATT 3917728 Query 27583 --AATGTCCAAAAGGAATCCACTCT 27605 ||| |||| || || ||||| || Sbjct 3917727 GCAATATCCAGAAAGAGTCCACCCT 3917703 >seq6 Length=30479472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || ||||| || |||||| |||| || |||| ||| | Sbjct 3763529 ATGCAGATTTTCATAAAAACCCTTACAGGGAAGACTGTTACGCTGGAGGCTGAACCCTCG 3763588 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | | | |||| || || || || ||||| ||||| ||||||||||| || ||| Sbjct 3763589 GACACTACAGAAAATGCAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 3763648 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||||||||||||||| || |||| |||| | | ||| | | Sbjct 3763649 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCTGACCACAGC 3763708 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | |||||| | || | |||| ||||| Sbjct 3763709 ATTCAGAAGGAGTCCACCCCTCATCTTATGCTGAGGCTTCATGGTGG 3763755 >seq93 Length=7280091 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/200 (71%), Gaps = 16/200 (8%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||||||||| || |||||||| | | || || | |||| | ||||| || Sbjct 3503661 GGGAAGACTATTACGCTCGAGGTTGAACCTCG-GACCCTATAGAAAATGTAAAGGCCAAG 3503719 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||| ||| ||||||| || |||||| | || || ||||||||||||||| Sbjct 3503720 ATCCAGGATAAGGAAGGA-TTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGTAAGCAA 3503778 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| ||||| || | || ||||| |||| |||||||| Sbjct 3503779 CTGGAAGATG--------------GACTACAACATTCAGAAGGAGGCCACCCTTCATCTT 3503824 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || || | ||| | ||||| Sbjct 3503825 GTGCTGAGGCTTTGTGGTGG 3503844 >seq30 Length=14751797 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || |||| || ||||| || | ||||||||||| || Sbjct 13753570 ATGCAGATTTTCATTAAAACCCTTATTGGGAAGACCATCATGCTTGAGGTTGAACCACTG 13753629 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || || | || ||||| |||||||||| | ||| Sbjct 13753630 GATACTATAGAAAATGTAAAAGCCAAGATCTAAGATAAGGAAAGAATTCCTCCCAATCAG 13753689 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||| ||||||||||||||| | || |||| ||| || | ||||| || Sbjct 13753690 CAAAGACTAATCTTTGCTGGTAAGCAAATGGAAGATGGGTGTA-TTTATCTGACTACAAC 13753748 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || || ||||| Sbjct 13753749 ATTCAGAAGGAGTCTACCCTCCATCT 13753774 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 ||| |||| || ||||| ||||||| || |||| || || |||||||| | |||| Sbjct 830312 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 830371 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || ||| || |||| || |||||| ||||||||||||||| ||||| ||| Sbjct 830372 TTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 830431 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG 81110 |||| | |||||| | ||||| || | || || || || ||||| Sbjct 830432 GACTCAATGATGGCATACCAAAGCTGCTGAGCTTTTACAACTTTGCG 830478 >seq128 Length=5608787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 2708696 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2708637 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | || || |||||||| ||||||||||| Sbjct 2708636 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGG 2708593 >seq73 Length=8706776 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/227 (69%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || ||||| || |||||||||| || | ||||| | Sbjct 2651547 ATGCAGATTTTCATAAAAACCCTTACGGGGAAGACTATTAG-CTCAAAGTTGAACCCTCG 2651605 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || || ||||| || || ||||||||||| || || Sbjct 2651606 GACACTATAGAAAATATAAAAGCCAAGATCCAGGATAACGAAGGAATTCCTCCTGATCAA 2651665 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | | || |||||||||||||||| || ||| ||||| | ||||| || Sbjct 2651666 CCAAGATTGATCGTTGCTGGTAAGCAACTGGAAGATAGACGTACTTT----GACTACAAC 2651721 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| |||||||| || || | ||||| ||||| Sbjct 2651722 ATTGAGAAGGAGTCCACCCTTCATCTTGTGCTGAGGCTTCGTGGTGG 2651768 >seq1607 Length=19272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | || Sbjct 6182 ATGCAGATCTTGGTGAAGACCCTGACGGGTAAGACCATCACCCTAGAGGTGGAGCCCAGT 6241 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || || ||| | ||||| || || || ||||| | || || || |||| | Sbjct 6242 GACTCCACTGAGAATGTCAAGGCAAAGATCCAA---AAGGAAGACATCCCCCCTGACCTG 6298 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || |||||||| || || || |||| | | ||||| | ||||| | Sbjct 6299 CACAGGTTGATCTTTGCTGGCAAAATTCTGGAAGATGTTTGCACCCTCTCTGACTACAGC 6358 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGC 27619 |||| |||||||||||||| || | ||| ||| Sbjct 6359 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGC 6392 >seq145 Length=5050978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 ||||||| || ||||| ||||| ||| | |||| | ||||| ||| | ||||| || Sbjct 972692 GGCAAGATCATCACTCTGGAGGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCAAAT 972633 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || ||||||| | || || || || |||||| | | || ||| ||| || || Sbjct 972632 ATCCAATACAAGGAAGACATCCCACCTGAGCAGCAGAGGTTGATCTTTATTGGCAAACAG 972573 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCT 27605 || || |||| | ||| | | ||||| || |||| |||||||||||||| Sbjct 972572 CTGGAAGATGGGCACACCTTCTCTGACTACAACATCCAGAAGGAATCCACTCT 972520 >seq22 Length=17878332 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACT-CGAGCC 32183 ||||| |||| | |||||||| ||||| ||| ||||| |||||| | | | | || Sbjct 15453456 ACCATCATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAACCC 15453397 Query 32184 ATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 || ||| |||||||| ||||| || |||||||||||| |||| ||| | || ||||| Sbjct 15453396 AT-TGGTCAGTTTGGTACCCGCCTACATGGTGGCAAGGATTCTGCTAGCCCTCGATACAT 15453338 Query 32244 CTTCAC 32249 |||||| Sbjct 15453337 CTTCAC 15453332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570221410190960