Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq152 100 3e-16 >seq3 Length=41493964 Score = 116 bits (128), Expect = 4e-21 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||| ||||||| || |||| | || || ||||||| || ||| || Sbjct 8287236 ACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCT 8287295 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || ||||| | ||| || |||| ||||||||| |||| | ||| |||||||| || Sbjct 8287296 TTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCCTCTA 8287355 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| || || | || |||| || || Sbjct 8287356 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGAA 8287415 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| |||||||||||| | || || | | |||| ||| || || | || Sbjct 8287416 CGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCACA 8287475 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| |||||||| || || |||| ||| || || || || || || ||||| Sbjct 8287476 AGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGC 8287534 >seq152 Length=4760374 Score = 100 bits (110), Expect = 3e-16 Identities = 184/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | || || ||||||| | ||| |||| ||||| | ||| || || | ||| Sbjct 2153703 TTCACAAATGAGCTGTGCTATTTGATCATCCTTTTTTACTTCAAACTTTTCTTTGCCAAA 2153644 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783 ||||||||||| | || | |||||| || |||| | ||||||| ||||| || | ||| Sbjct 2153643 ATTAAATAACACAACACTAACATTTCCTCTATAATTTTTATCTATGACACCAGCTCTTAC 2153584 Query 22784 ATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTTC 22843 |||||| || || || ||||| || | | |||| || ||||||||| | || Sbjct 2153583 ATCGATGAAGTGTTTTGCAGCCAAGCCAGGACGTGGAGCTACTCTTCCATAACACCCAGA 2153524 Query 22844 CGGTATATCTATTATAATATCAGTCATTACTAATTGTTTACCCATAGGTTCTATTACGTA 22903 || | | |||| || || || | || | ||| |||||||| |||| || Sbjct 2153523 AGGAAGAGCTATCTGAACGTCTGTTTTCACAAGGGCTTTCTCCATAGGTGGTATTCTATA 2153464 Query 22904 ATTATACGCGCTATATAGATCATATCCTGC 22933 || ||| || || || || ||||| ||||| Sbjct 2153463 ATCATAAGCACTGTACAGGTCATAGCCTGC 2153434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603086681175920