Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_028238.1
Length=188534
Score E
Sequences producing significant alignments: (Bits) Value
seq3 116 4e-21
seq152 100 3e-16
>seq3
Length=41493964
Score = 116 bits (128), Expect = 4e-21
Identities = 205/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694
|||||| ||| ||||||| || |||| | || || ||||||| || ||| ||
Sbjct 8287236 ACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCT 8287295
Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754
|| ||||| | ||| || |||| ||||||||| |||| | ||| |||||||| ||
Sbjct 8287296 TTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCCTCTA 8287355
Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814
|||||| |||||| ||||| || |||||||| || || | || |||| || ||
Sbjct 8287356 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGAA 8287415
Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874
| |||| |||||||||||| | || || | | |||| ||| || || | ||
Sbjct 8287416 CGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCACA 8287475
Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933
| ||| |||||||| || || |||| ||| || || || || || || |||||
Sbjct 8287476 AGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGC 8287534
>seq152
Length=4760374
Score = 100 bits (110), Expect = 3e-16
Identities = 184/270 (68%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723
|||| | || || ||||||| | ||| |||| ||||| | ||| || || | |||
Sbjct 2153703 TTCACAAATGAGCTGTGCTATTTGATCATCCTTTTTTACTTCAAACTTTTCTTTGCCAAA 2153644
Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783
||||||||||| | || | |||||| || |||| | ||||||| ||||| || | |||
Sbjct 2153643 ATTAAATAACACAACACTAACATTTCCTCTATAATTTTTATCTATGACACCAGCTCTTAC 2153584
Query 22784 ATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTTC 22843
|||||| || || || ||||| || | | |||| || ||||||||| | ||
Sbjct 2153583 ATCGATGAAGTGTTTTGCAGCCAAGCCAGGACGTGGAGCTACTCTTCCATAACACCCAGA 2153524
Query 22844 CGGTATATCTATTATAATATCAGTCATTACTAATTGTTTACCCATAGGTTCTATTACGTA 22903
|| | | |||| || || || | || | ||| |||||||| |||| ||
Sbjct 2153523 AGGAAGAGCTATCTGAACGTCTGTTTTCACAAGGGCTTTCTCCATAGGTGGTATTCTATA 2153464
Query 22904 ATTATACGCGCTATATAGATCATATCCTGC 22933
|| ||| || || || || ||||| |||||
Sbjct 2153463 ATCATAAGCACTGTACAGGTCATAGCCTGC 2153434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603086681175920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |