Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq82 134 1e-26
seq394 89.7 4e-13
>seq82
Length=8104705
Score = 134 bits (148), Expect = 1e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| || || || || |||||||||||||| |||||
Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||||| ||||| || || ||||| || | |
Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 34665
>seq394
Length=841001
Score = 89.7 bits (98), Expect = 4e-13
Identities = 277/423 (65%), Gaps = 7/423 (2%)
Strand=Plus/Plus
Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923
|||||| | ||||| | || | || || ||| || | | || ||||||| ||
Sbjct 665324 AGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATGC 665383
Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACG-TGAGGAGAGAGTA 29982
| ||| || || || | || | ||| ||| || | |||||| | | || || | ||
Sbjct 665384 ATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATA 665443
Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042
|||| | ||| | || |||| || | |||||| | || ||||| ||||| | | ||
Sbjct 665444 GCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGCA 665503
Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102
|| ||||| | || | | ||| ||||| || | | | ||||| ||||| || |||
Sbjct 665504 GGACAGCTCCCATTCAC-CTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGCAGCAT 665562
Query 30103 GAGGCCCAAGTCTTTGGG-GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161
|| || ||||| || |||||| | |||| ||| || | ||| |||| ||||||
Sbjct 665563 CAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTCTTCTGGCTTCAGGGTTGG 665622
Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC-- 30219
| ||||| || | | |||||||| || || || || | || || ||||
Sbjct 665623 TTTTGATGGTGTTGATCACTTTTTGCAGATGGTCTACTCCTTGATCAGAATAATCTGAAT 665682
Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279
|| || | |||| | ||| | ||||| ||||||||||| || || || || | ||
Sbjct 665683 CCACACCTTTGTGT--TTTGCCCAAAAATGTCTCCACTGGAAGCCATAAACTGGGACAAG 665740
Query 30280 GTC 30282
|||
Sbjct 665741 GTC 665743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406248585332436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |