Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq82 134 1e-26 seq394 89.7 4e-13 >seq82 Length=8104705 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || || |||||||||||||| ||||| Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || || ||||| || | | Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 34665 >seq394 Length=841001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 277/423 (65%), Gaps = 7/423 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 |||||| | ||||| | || | || || ||| || | | || ||||||| || Sbjct 665324 AGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATGC 665383 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACG-TGAGGAGAGAGTA 29982 | ||| || || || | || | ||| ||| || | |||||| | | || || | || Sbjct 665384 ATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATA 665443 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 |||| | ||| | || |||| || | |||||| | || ||||| ||||| | | || Sbjct 665444 GCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGCA 665503 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || ||||| | || | | ||| ||||| || | | | ||||| ||||| || ||| Sbjct 665504 GGACAGCTCCCATTCAC-CTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGCAGCAT 665562 Query 30103 GAGGCCCAAGTCTTTGGG-GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 || || ||||| || |||||| | |||| ||| || | ||| |||| |||||| Sbjct 665563 CAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTCTTCTGGCTTCAGGGTTGG 665622 Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC-- 30219 | ||||| || | | |||||||| || || || || | || || |||| Sbjct 665623 TTTTGATGGTGTTGATCACTTTTTGCAGATGGTCTACTCCTTGATCAGAATAATCTGAAT 665682 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 || || | |||| | ||| | ||||| ||||||||||| || || || || | || Sbjct 665683 CCACACCTTTGTGT--TTTGCCCAAAAATGTCTCCACTGGAAGCCATAAACTGGGACAAG 665740 Query 30280 GTC 30282 ||| Sbjct 665741 GTC 665743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406248585332436