Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq14 140 3e-28
seq126 136 3e-27
seq13 98.7 9e-16
>seq14
Length=21378024
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||| |||||| | || || || || || || ||
Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| |||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | |||| || |||||||| |||| || | || | || |||||||||
Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||| ||| | || ||||| | || |||| ||||||||
Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCAT 6329960
>seq126
Length=5838822
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||| |||||| | || || || || || || ||
Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| |||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| |||||| || |||||||| |||| || | || | || ||||||| |
Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||| ||| | || ||||| | || |||| ||||||||
Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCAT 680967
>seq13
Length=21495731
Score = 98.7 bits (108), Expect = 9e-16
Identities = 154/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|| ||||| ||||| || || |||| |||||| | || || || || || || ||
Sbjct 9191702 ATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 9191761
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| |||||| |||| |||||||| | || ||||| ||||| |||||
Sbjct 9191762 GACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATCAG 9191821
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166
|||| | | |||| || || ||||| | || || | || || | || ||||||||
Sbjct 9191822 CAGCATCTGATATTTGCAGGTAAACAGCTAGAGGAT-GACCGCACTCTCTCAGATTACAA 9191880
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT--TTTGC 27201
||| || || ||||| || || | ||||| |||||
Sbjct 9191881 CATCCAGAAAGAGTCCACTCTATACTTGGTGCTTTGC 9191917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434850536420160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |