Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq394 174 1e-38 seq82 147 2e-30 seq106 118 1e-21 >seq394 Length=841001 Score = 174 bits (192), Expect = 1e-38 Identities = 315/457 (69%), Gaps = 3/457 (1%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 ||||||| || ||||| | || | |||| | | ||||| || || ||| ||| Sbjct 665288 ATTTTGAACTTTGGGAAAGCTCTTGCTTCTCATAGAAGCTGAATTTTCAGTGCCTCAATG 665347 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || ||||| || ||| | ||||| ||||| | ||||| | ||||| || || || Sbjct 665348 TGATTCAGTTAAATACGTGCATCTCCCAAAGAATGCATAAAGTCCCCTGGCTGCAGGTCC 665407 Query 6614 ACGACATGAGCGATCATGTACG-TGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 || || || | |||||| | | ||||| || || || ||||| |||| || | || Sbjct 665408 CTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATAGCTGTCAATGCTGAAAGGTATGCC 665467 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 || |||||| |||| || | || || | | ||||||||||| ||||||| | ||| Sbjct 665468 CAAGCCCATGACTCCTGACCTATGGTACATCCAGCAGGACAGCT-CCCATTCACCTTGTA 665526 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG-GTTCC 6791 ||| ||||||||| ||||| || || ||| ||||||||| | ||| || || ||||| Sbjct 665527 GAACTGGCAGAGGACATGGCATGGAGGCAGCAGCATCAGAGGAAAATCTTTTGGAGTTCC 665586 Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACT 6851 | | ||||| | || |||||| | |||||||| || | ||||| |||||| | | Sbjct 665587 AAACACACATGATAATTCTTCTGGCTTCAGGGTTGGTTTTGATGGTGTTGATCACTTTTT 665646 Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 |||| ||||| |||| || | ||||| || | || || | | |||| || Sbjct 665647 GCAGATGGTCTACTCCTTGATCAGAATAATCTGAATCCACACCTTTGTGTTTTGCCCAAA 665706 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTC 6948 | |||||||||||||| || || || ||| | | ||| Sbjct 665707 AATGTCTCCACTGGAAGCCATAAACTGGGACAAGGTC 665743 Score = 174 bits (192), Expect = 1e-38 Identities = 315/457 (69%), Gaps = 3/457 (1%) Strand=Plus/Minus Query 34397 GACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGC 34456 ||| | | ||| || || || |||||||||||||| ||| |||| | | || Sbjct 665743 GACCTTGTCCCAGTTTATGGCTTCCAGTGGAGACATTTTTGGGCAAAACACAAAGGTGTG 665684 Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAG 34516 || | || ||||| | || |||| ||||| ||||| | |||||| ||||| | || Sbjct 665683 GATTCAGATTATTCTGATCAAGGAGTAGACCATCTGCAAAAAGTGATCAACACCATCAAA 665624 Query 34517 CGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC-CCGAAGGATCTCCCTCT 34575 |||||||| | |||||| || | ||||| | |||||| || || ||| | ||||| Sbjct 665623 ACCAACCCTGAAGCCAGAAGAATTATCATGTGTGTTTGGAACTCCAAAAGATTTTCCTCT 665564 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||| ||| || || ||||| ||||||||| |||||| | ||||||| ||||||| Sbjct 665563 GATGCTGCTGCCTCCATGCCATGTCCTCTGCCAGTTCTACAAGGTGAATGGG-AGCTGTC 665505 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||| | | || || | || |||| |||||| || || | || |||| ||||| || Sbjct 665504 CTGCTGGATGTACCATAGGTCAGGAGTCATGGGCTTGGGCATACCTTTCAGCATTGACAG 665445 Query 34696 TTACGCTCTGCTCA-CGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGG 34754 || || ||||| | | |||||| | || || || || || || ||||| | Sbjct 665444 CTATGCCCTGCTTACCTTACATGGTTGCGCACATCAGGGACCTGCAGCCAGGGGACTTTA 665385 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 ||||| | ||||| ||||| | ||| || ||||| ||||| ||| || || |||| Sbjct 665384 TGCATTCTTTGGGAGATGCACGTATTTAACTGAATCACATTGAGGCACTGAAAATTCAGC 665325 Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 | | | |||| | || | ||||| || ||||||| Sbjct 665324 TTCTATGAGAAGCAAGAGCTTTCCCAAAGTTCAAAAT 665288 >seq82 Length=8104705 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || ||||| | || || || |||||||| ||||| || | ||| Sbjct 34514 TGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 34573 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || | || || |||||||||||||||||||||||| | |||||||| ||| Sbjct 34574 ATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 34633 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 34634 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 34674 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| |||||||| | |||| Sbjct 34674 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 34615 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || | || || |||||||| | || ||||| ||| Sbjct 34614 GGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTC 34555 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || | ||||| || |||||||| || || Sbjct 34554 AACATCGCCAGCTATTCCCTGCTTACCTACATGATTGCACA 34514 >seq106 Length=6505572 Score = 118 bits (130), Expect = 1e-21 Identities = 327/501 (65%), Gaps = 29/501 (6%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| |||||||| || ||| |||| | |||||| || || | ||| || || |||| | Sbjct 5365487 TTCCTCTGCTGACAACCAAATGTGTATTCTGGAAAGGAGTTTTGGAGTAGTTGGTGTGAT 5365546 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 | | | ||| |||| || | ||| | || || ||| || || || |||||||| | Sbjct 5365547 TTATCAAGGGATCCACAAATGCTAAGAA-CTATCTTCCAGGCAAGTAAACATCTGGGATG 5365605 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGAC 34399 | | | ||||| || |||| ||| | | | | ||| ||| | || || ||| Sbjct 5365606 CCAATGCGTCTCAAGCCTTTTGGGATGACCTGAGATTCTCCACCAAAAAAGCTAGG-GAC 5365664 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 ||||||| || |||||||| ||| || | || || | | || Sbjct 5365665 CTGGGCCCAGT-------------TGGAGACATTTTTGGACAGAATACAAAGATATGGAT 5365711 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || ||||| | || ||| | ||| |||| | ||||||| |||| | || Sbjct 5365712 TTAGATTATTCTGATCAAGGAATAGGCCATTTGCAAAAAGTGATCGGCACCATCAAAACC 5365771 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 |||||||| | |||||| ||| | ||||| | ||||| || || | | | | ||||||| Sbjct 5365772 AACCCTGAAGCCAGAAGAATCATCATGTGTGTTTGGAAACCAAAAGCTTTTCTTCTGATG 5365831 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 | ||| || || ||| | |||||| | ||||||||||||||||||| Sbjct 5365832 GTGCTGCCTCCATGCTAG------------TTCTACAAGGTGAATGGGGAGCTGTCCTGC 5365879 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 ||| ||||| | || |||| |||||| || || ||||| |||||||| | | || Sbjct 5365880 TGGCTGTATCATAGGTCAGGAGTCATGGGCTTGGGCGTGCCTTTCAACATCCATTGCTAT 5365939 Query 34700 GCTCTGCTCA-CGTACATGAT 34719 | ||||| | | |||||||| Sbjct 5365940 ACCCTGCTTACCTTACATGAT 5365960 Score = 118 bits (130), Expect = 1e-21 Identities = 327/501 (65%), Gaps = 29/501 (6%) Strand=Plus/Minus Query 6626 ATCATGTACG-TGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 |||||||| | | ||||| | || | | |||||||| ||||| || || |||||| | Sbjct 5365960 ATCATGTAAGGTAAGCAGGGTATAGCAATGGATGTTGAAAGGCACGCCCAAGCCCATGAC 5365901 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 ||| || | ||||| ||| ||||||||||||||||||| | |||||| Sbjct 5365900 TCCTGACCTATGATACAGCCAGCAGGACAGCTCCCCATTCACCTTGTAGAA--------- 5365850 Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCAC 6804 | ||| || || ||| |||||||| | | | | || || ||||| | ||||| | Sbjct 5365849 ---CTAGCATGGAGGCAGCACCATCAGAAGAAAAGCTTTTGGTTTCCAAACACACATGAT 5365793 Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864 ||| |||||| | |||||||| || | |||| ||||||| | |||| ||| | Sbjct 5365792 GATTCTTCTGGCTTCAGGGTTGGTTTTGATGGTGCCGATCACTTTTTGCAAATGGCCTAT 5365733 Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 ||| || | ||||| || || | | || || | || ||| |||||||| Sbjct 5365732 TCCTTGATCAGAATAATCTAAATCCATATCTTTGTATTCTGTCCAAAAATGTCTCCA--- 5365676 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG-GAACCCCCGCTTGTCCA 6983 || ||||||| ||| || || | ||| ||| | | | | ||| Sbjct 5365675 ----------ACTGGGCCCAGGTC-CCTAGCTTTTTTGGTGGAGAATCTCAGGTCATCCC 5365627 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043 |||| || ||||| | | || |||||||| || || || ||| || || | ||| | Sbjct 5365626 AAAAGGCTTGAGACGCATTGGCATCCCAGATGTTTACTTGCCTGGAAGATAG-TTCTTAG 5365568 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 || |||| ||| | | || |||| || || ||| | || || |||||| | |||| Sbjct 5365567 CATTTGTGGATCCCTTGATAAATCACACCAACTACTCCAAAACTCCTTTCCAGAATACAC 5365508 Query 7104 GTTTCGTCGTCAGCAGCGGAA 7124 ||| || |||||||| |||| Sbjct 5365507 ATTTGGTTGTCAGCAGAGGAA 5365487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448192454255760