Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq394 174 1e-38
seq82 147 2e-30
seq106 118 1e-21
>seq394
Length=841001
Score = 174 bits (192), Expect = 1e-38
Identities = 315/457 (69%), Gaps = 3/457 (1%)
Strand=Plus/Plus
Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553
||||||| || ||||| | || | |||| | | ||||| || || ||| |||
Sbjct 665288 ATTTTGAACTTTGGGAAAGCTCTTGCTTCTCATAGAAGCTGAATTTTCAGTGCCTCAATG 665347
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
|| ||||| || ||| | ||||| ||||| | ||||| | ||||| || || ||
Sbjct 665348 TGATTCAGTTAAATACGTGCATCTCCCAAAGAATGCATAAAGTCCCCTGGCTGCAGGTCC 665407
Query 6614 ACGACATGAGCGATCATGTACG-TGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672
|| || || | |||||| | | ||||| || || || ||||| |||| || | ||
Sbjct 665408 CTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATAGCTGTCAATGCTGAAAGGTATGCC 665467
Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732
|| |||||| |||| || | || || | | ||||||||||| ||||||| | |||
Sbjct 665468 CAAGCCCATGACTCCTGACCTATGGTACATCCAGCAGGACAGCT-CCCATTCACCTTGTA 665526
Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG-GTTCC 6791
||| ||||||||| ||||| || || ||| ||||||||| | ||| || || |||||
Sbjct 665527 GAACTGGCAGAGGACATGGCATGGAGGCAGCAGCATCAGAGGAAAATCTTTTGGAGTTCC 665586
Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACT 6851
| | ||||| | || |||||| | |||||||| || | ||||| |||||| | |
Sbjct 665587 AAACACACATGATAATTCTTCTGGCTTCAGGGTTGGTTTTGATGGTGTTGATCACTTTTT 665646
Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911
|||| ||||| |||| || | ||||| || | || || | | |||| ||
Sbjct 665647 GCAGATGGTCTACTCCTTGATCAGAATAATCTGAATCCACACCTTTGTGTTTTGCCCAAA 665706
Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTC 6948
| |||||||||||||| || || || ||| | | |||
Sbjct 665707 AATGTCTCCACTGGAAGCCATAAACTGGGACAAGGTC 665743
Score = 174 bits (192), Expect = 1e-38
Identities = 315/457 (69%), Gaps = 3/457 (1%)
Strand=Plus/Minus
Query 34397 GACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGC 34456
||| | | ||| || || || |||||||||||||| ||| |||| | | ||
Sbjct 665743 GACCTTGTCCCAGTTTATGGCTTCCAGTGGAGACATTTTTGGGCAAAACACAAAGGTGTG 665684
Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAG 34516
|| | || ||||| | || |||| ||||| ||||| | |||||| ||||| | ||
Sbjct 665683 GATTCAGATTATTCTGATCAAGGAGTAGACCATCTGCAAAAAGTGATCAACACCATCAAA 665624
Query 34517 CGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC-CCGAAGGATCTCCCTCT 34575
|||||||| | |||||| || | ||||| | |||||| || || ||| | |||||
Sbjct 665623 ACCAACCCTGAAGCCAGAAGAATTATCATGTGTGTTTGGAACTCCAAAAGATTTTCCTCT 665564
Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635
|||| ||| || || ||||| ||||||||| |||||| | ||||||| |||||||
Sbjct 665563 GATGCTGCTGCCTCCATGCCATGTCCTCTGCCAGTTCTACAAGGTGAATGGG-AGCTGTC 665505
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||| | | || || | || |||| |||||| || || | || |||| ||||| ||
Sbjct 665504 CTGCTGGATGTACCATAGGTCAGGAGTCATGGGCTTGGGCATACCTTTCAGCATTGACAG 665445
Query 34696 TTACGCTCTGCTCA-CGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGG 34754
|| || ||||| | | |||||| | || || || || || || ||||| |
Sbjct 665444 CTATGCCCTGCTTACCTTACATGGTTGCGCACATCAGGGACCTGCAGCCAGGGGACTTTA 665385
Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814
||||| | ||||| ||||| | ||| || ||||| ||||| ||| || || ||||
Sbjct 665384 TGCATTCTTTGGGAGATGCACGTATTTAACTGAATCACATTGAGGCACTGAAAATTCAGC 665325
Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851
| | | |||| | || | ||||| || |||||||
Sbjct 665324 TTCTATGAGAAGCAAGAGCTTTCCCAAAGTTCAAAAT 665288
>seq82
Length=8104705
Score = 147 bits (162), Expect = 2e-30
Identities = 129/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| || ||||| | || || || |||||||| ||||| || | |||
Sbjct 34514 TGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 34573
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| || || | || || |||||||||||||||||||||||| | |||||||| |||
Sbjct 34574 ATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 34633
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||| || || || ||||||||||| |||||
Sbjct 34634 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 34674
Score = 147 bits (162), Expect = 2e-30
Identities = 129/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| || || || ||||| |||||||||| |||||||| | ||||
Sbjct 34674 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 34615
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||||| || || | || || |||||||| | || ||||| |||
Sbjct 34614 GGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTC 34555
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || || | ||||| || |||||||| || ||
Sbjct 34554 AACATCGCCAGCTATTCCCTGCTTACCTACATGATTGCACA 34514
>seq106
Length=6505572
Score = 118 bits (130), Expect = 1e-21
Identities = 327/501 (65%), Gaps = 29/501 (6%)
Strand=Plus/Plus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| |||||||| || ||| |||| | |||||| || || | ||| || || |||| |
Sbjct 5365487 TTCCTCTGCTGACAACCAAATGTGTATTCTGGAAAGGAGTTTTGGAGTAGTTGGTGTGAT 5365546
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340
| | | ||| |||| || | ||| | || || ||| || || || |||||||| |
Sbjct 5365547 TTATCAAGGGATCCACAAATGCTAAGAA-CTATCTTCCAGGCAAGTAAACATCTGGGATG 5365605
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGAC 34399
| | | ||||| || |||| ||| | | | | ||| ||| | || || |||
Sbjct 5365606 CCAATGCGTCTCAAGCCTTTTGGGATGACCTGAGATTCTCCACCAAAAAAGCTAGG-GAC 5365664
Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459
||||||| || |||||||| ||| || | || || | | ||
Sbjct 5365665 CTGGGCCCAGT-------------TGGAGACATTTTTGGACAGAATACAAAGATATGGAT 5365711
Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519
|| ||||| | || ||| | ||| |||| | ||||||| |||| | ||
Sbjct 5365712 TTAGATTATTCTGATCAAGGAATAGGCCATTTGCAAAAAGTGATCGGCACCATCAAAACC 5365771
Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579
|||||||| | |||||| ||| | ||||| | ||||| || || | | | | |||||||
Sbjct 5365772 AACCCTGAAGCCAGAAGAATCATCATGTGTGTTTGGAAACCAAAAGCTTTTCTTCTGATG 5365831
Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639
| ||| || || ||| | |||||| | |||||||||||||||||||
Sbjct 5365832 GTGCTGCCTCCATGCTAG------------TTCTACAAGGTGAATGGGGAGCTGTCCTGC 5365879
Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699
||| ||||| | || |||| |||||| || || ||||| |||||||| | | ||
Sbjct 5365880 TGGCTGTATCATAGGTCAGGAGTCATGGGCTTGGGCGTGCCTTTCAACATCCATTGCTAT 5365939
Query 34700 GCTCTGCTCA-CGTACATGAT 34719
| ||||| | | ||||||||
Sbjct 5365940 ACCCTGCTTACCTTACATGAT 5365960
Score = 118 bits (130), Expect = 1e-21
Identities = 327/501 (65%), Gaps = 29/501 (6%)
Strand=Plus/Minus
Query 6626 ATCATGTACG-TGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684
|||||||| | | ||||| | || | | |||||||| ||||| || || |||||| |
Sbjct 5365960 ATCATGTAAGGTAAGCAGGGTATAGCAATGGATGTTGAAAGGCACGCCCAAGCCCATGAC 5365901
Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744
||| || | ||||| ||| ||||||||||||||||||| | ||||||
Sbjct 5365900 TCCTGACCTATGATACAGCCAGCAGGACAGCTCCCCATTCACCTTGTAGAA--------- 5365850
Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCAC 6804
| ||| || || ||| |||||||| | | | | || || ||||| | ||||| |
Sbjct 5365849 ---CTAGCATGGAGGCAGCACCATCAGAAGAAAAGCTTTTGGTTTCCAAACACACATGAT 5365793
Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864
||| |||||| | |||||||| || | |||| ||||||| | |||| ||| |
Sbjct 5365792 GATTCTTCTGGCTTCAGGGTTGGTTTTGATGGTGCCGATCACTTTTTGCAAATGGCCTAT 5365733
Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924
||| || | ||||| || || | | || || | || ||| ||||||||
Sbjct 5365732 TCCTTGATCAGAATAATCTAAATCCATATCTTTGTATTCTGTCCAAAAATGTCTCCA--- 5365676
Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG-GAACCCCCGCTTGTCCA 6983
|| ||||||| ||| || || | ||| ||| | | | | |||
Sbjct 5365675 ----------ACTGGGCCCAGGTC-CCTAGCTTTTTTGGTGGAGAATCTCAGGTCATCCC 5365627
Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043
|||| || ||||| | | || |||||||| || || || ||| || || | ||| |
Sbjct 5365626 AAAAGGCTTGAGACGCATTGGCATCCCAGATGTTTACTTGCCTGGAAGATAG-TTCTTAG 5365568
Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103
|| |||| ||| | | || |||| || || ||| | || || |||||| | ||||
Sbjct 5365567 CATTTGTGGATCCCTTGATAAATCACACCAACTACTCCAAAACTCCTTTCCAGAATACAC 5365508
Query 7104 GTTTCGTCGTCAGCAGCGGAA 7124
||| || |||||||| ||||
Sbjct 5365507 ATTTGGTTGTCAGCAGAGGAA 5365487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448192454255760
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