Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq68 163 2e-35 seq29 122 7e-23 seq82 93.3 3e-14 >seq68 Length=9168529 Score = 163 bits (180), Expect = 2e-35 Identities = 188/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337 ||||||| | ||||| |||||||| ||| || || ||||||||||||||||| Sbjct 18953 CAAGAAGCCTTGATTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAAAACATGGTT 19012 Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397 || | || | ||| |||||||| || ||||| || ||| | | | ||||||| Sbjct 19013 ACCTACAGCAGGAGCCATGGGGTTGTGGTCCAGCCTGCCTACCGGGGCAGAGTGAACATC 19072 Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457 || ||||| ||||| || ||| |||| || ||||||||||||||||| |||| || || Sbjct 19073 ACCGAGCTGGGACTCCAGAACTCAACCATCACCTTCTGGAACACAACGCTGGAGGACGAG 19132 Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGT 1517 ||||| |||| |||| | || ||||| ||| | ||||||||||| || ||| || || Sbjct 19133 GGGTGTTACATGTGTCTCTTCAACACCTTTAGTTCTGGGAAGATCTCGAGAACAGCCTGC 19192 Query 1518 CTAACCCTTTTTG 1530 || ||||||| || Sbjct 19193 CTCACCCTTTATG 19205 >seq29 Length=14995995 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 2210709 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2210768 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 2210769 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2210828 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 2210829 ATCGCCCTGTGGATGACTGA 2210848 >seq82 Length=8104705 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || |||||||| | || || || Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||| |||| |||||||||| ||||| || |||||||| || | Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || ||||||||||| |||| Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 34662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414413742924412