Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq68 163 2e-35
seq29 122 7e-23
seq82 93.3 3e-14
>seq68
Length=9168529
Score = 163 bits (180), Expect = 2e-35
Identities = 188/253 (74%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337
||||||| | ||||| |||||||| ||| || || |||||||||||||||||
Sbjct 18953 CAAGAAGCCTTGATTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAAAACATGGTT 19012
Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397
|| | || | ||| |||||||| || ||||| || ||| | | | |||||||
Sbjct 19013 ACCTACAGCAGGAGCCATGGGGTTGTGGTCCAGCCTGCCTACCGGGGCAGAGTGAACATC 19072
Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457
|| ||||| ||||| || ||| |||| || ||||||||||||||||| |||| || ||
Sbjct 19073 ACCGAGCTGGGACTCCAGAACTCAACCATCACCTTCTGGAACACAACGCTGGAGGACGAG 19132
Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGT 1517
||||| |||| |||| | || ||||| ||| | ||||||||||| || ||| || ||
Sbjct 19133 GGGTGTTACATGTGTCTCTTCAACACCTTTAGTTCTGGGAAGATCTCGAGAACAGCCTGC 19192
Query 1518 CTAACCCTTTTTG 1530
|| ||||||| ||
Sbjct 19193 CTCACCCTTTATG 19205
>seq29
Length=14995995
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 2210709 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2210768
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 2210769 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2210828
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 2210829 ATCGCCCTGTGGATGACTGA 2210848
>seq82
Length=8104705
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| ||||||||||| || | || |||||||| | || || ||
Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| |||||||| |||| |||||||||| ||||| || |||||||| || |
Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
|| || ||||| | | | || ||||||||||| ||||
Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 34662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414413742924412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |