Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14 152 1e-31 seq126 143 6e-29 seq118 140 8e-28 seq73 131 4e-25 seq6 131 4e-25 seq353 123 6e-23 seq279 118 2e-21 seq13 118 2e-21 seq26 114 3e-20 seq93 109 1e-18 seq90 100 7e-16 seq145 91.5 3e-13 seq96 87.8 4e-12 seq178 86.0 1e-11 seq128 84.2 5e-11 >seq14 Length=21378024 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| ||||| | || || | ||||| Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || || || || ||||| || | || |||||||| Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || |||||||||||| | ||||||||||| ||||| ||| Sbjct 6329822 TGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6329763 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 6329762 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||| | ||||| | || || ||||| Sbjct 680949 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCC 680890 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| |||||||| || || || || || || ||||| || | || |||||||| Sbjct 680889 TCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 680830 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || |||||||||||| | ||||||||||| ||||| ||| Sbjct 680829 TGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 680770 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 680769 TTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq118 Length=6029945 Score = 140 bits (154), Expect = 8e-28 Identities = 157/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAAT--CCGCAAGGGTCCTTCCATCTTCCAGCTGCT 210972 || ||||||||||| ||||| || ||| | | ||| || | |||||||||||||||| Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762 Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032 ||||||| ||||| || | | ||||||||||||| ||||| || |||| | |||| Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAG 3917822 Query 211033 GTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| || || ||||||||| |||| || | ||| | ||||| ||||| || || Sbjct 3917823 CCTTCACATTCTCAATGGTGTCACTGAGC--TCCATCTCCAAGGTGATAGTCTTGCCAGT 3917880 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | ||||||||| Sbjct 3917881 CAGGGTCTTCACAAAGATCTGCATTTT 3917907 >seq73 Length=8706776 Score = 131 bits (144), Expect = 4e-25 Identities = 164/222 (74%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| || || ||||| ||||| |||||||| || | ||||| || || ||| | Sbjct 2651763 ACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCA--AAG--T 2651708 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||||| ||||| || || | ||| | | | |||| |||||||||| ||| Sbjct 2651707 ACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCC 2651648 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||||||||| ||| | ||||| || ||||| ||| |||||| | ||| Sbjct 2651647 TTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG 2651588 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| ||||| || || |||| || | |||||| Sbjct 2651587 -CTAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 >seq6 Length=30479472 Score = 131 bits (144), Expect = 4e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||| || || | ||| ||| | |||||||| || || ||| | | || | | || | Sbjct 3763748 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 3763689 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||||||| ||||| || || ||||| || | ||| || |||||||||| ||||| Sbjct 3763688 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3763629 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 |||| ||||||||||| ||| | ||||| | ||||| ||| |||| |||| || | Sbjct 3763628 CCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCG 3763569 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | | ||||| || || || || |||| || | |||||| Sbjct 3763568 TAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 >seq353 Length=1223491 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| ||||| || || || | ||| || | |||||| Sbjct 241196 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCT 241255 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| |||| ||||| || ||| Sbjct 241256 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 241315 Query 211023 TGGATCTT 211030 |||||||| Sbjct 241316 TGGATCTT 241323 >seq279 Length=2078848 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | | |||||||| ||||||||||| || | ||| | | |||||| Sbjct 1038289 AGGACCAGGTGCTGGGCTGACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCT 1038348 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||| |||| | | | ||| ||| Sbjct 1038349 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTTCTTATCC 1038408 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| |||| ||||| ||||||||| Sbjct 1038409 TGGATCTTGGCCTTCATATTTTCAATGGTGTCA 1038441 >seq13 Length=21495731 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974 |||||||||||||| |||||||| ||||| | || || | |||| || ||||| || Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842 Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || || || | || || ||||| || | || |||| ||| || | ||| | Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||| | || |||||||| ||||| ||||| || | || Sbjct 9191781 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGG 9191722 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||| || Sbjct 9191721 GTCTTCACAAAGATCTGAAT 9191702 >seq26 Length=15501076 Score = 114 bits (126), Expect = 3e-20 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || || || |||| |||||||| || || ||||| || || | || | Sbjct 10001824 AAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACG 10001883 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||||||| ||||| | || ||||| || | ||| || | |||||||| |||||| Sbjct 10001884 TCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTC 10001943 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || ||||| || || || | ||||||||| | || Sbjct 10001944 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTG---GTTCAACCTCCATTGT 10002000 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | || || || ||||| || | |||||| Sbjct 10002001 AATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039 >seq93 Length=7280091 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 16/195 (8%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || ||| || || ||||| ||||| |||| ||| || || ||||| || ||| Sbjct 3503839 ACAAAGCCTCAGCACAAGATGAAGGGTGGCCTCCTTCTGAATGTTGTAGTCC-------- 3503788 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||| ||||| || || ||||| || | || || |||||||||| ||| Sbjct 3503787 ------ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAA-TCC 3503735 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || | ||| ||| |||||||||||| Sbjct 3503734 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGAG-GTTCAACCTCGAG 3503676 Query 211073 AGTGATCGTCTTTCC 211087 || || ||||| || Sbjct 3503675 CGTAATAGTCTTCCC 3503661 >seq90 Length=7592057 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || |||||||| || || ||||| || || || | ||||| | |||||| Sbjct 464131 AGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 464072 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || ||||| || || | || |||||||| Sbjct 464071 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 464012 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| || || || || ||||||||| Sbjct 464011 TGGATCTTGGCCTTGACATTCTCAATGGTGTCA 463979 >seq145 Length=5050978 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || |||||||| || || |||||||| || || | | ||| |||||| Sbjct 972508 AGGACCAAGTACAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATCT 972567 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| ||||| | | || || ||||| || | ||||||||| Sbjct 972568 TCCAGCTGTTTGCCAATAAAGATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTAT 972627 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| || || || || ||||||||| | || ||||| |||||||| || Sbjct 972628 TGGATATTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGATC 972687 Query 211083 TTTCC 211087 || || Sbjct 972688 TTGCC 972692 >seq96 Length=7027464 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||||||||| |||||||| || || || || | |||||| Sbjct 4535822 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTACTC----AGAGTGCGGCCATCT 4535877 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAG 210988 ||||||||||||||||| ||||| || Sbjct 4535878 TCCAGCTGCTTGCCTGCAAAGATGAG 4535903 >seq178 Length=4226165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 16/212 (8%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||||| |||| || ||||| | || || | ||||| Sbjct 1706329 AGGACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTGCAGCCATCC 1706386 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || | ||| || | ||||||||||| Sbjct 1706387 TCCAGCTGTTTGCCCGCAAATATCAGACATTGCTGATG----------CCTTCCTTGTCT 1706436 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || || |||||||| ||| |||| ||| ||||| ||| Sbjct 1706437 TGCATTTTGGCTTTGACATTCTCAGTGGTGTCA----CTTCGACCTTGAGGGTGATGGTC 1706492 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||| | | || || ||||| | |||||| Sbjct 1706493 TTGCCCATCATGGTTTTCACAAAGATCTGCAT 1706524 >seq128 Length=5608787 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| || || || ||| || || |||||||||||| | ||||||||| Sbjct 2708593 CCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCG 2708652 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 2708653 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2708696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158966607040295