Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq14 152 1e-31
seq126 143 6e-29
seq118 140 8e-28
seq73 131 4e-25
seq6 131 4e-25
seq353 123 6e-23
seq279 118 2e-21
seq13 118 2e-21
seq26 114 3e-20
seq93 109 1e-18
seq90 100 7e-16
seq145 91.5 3e-13
seq96 87.8 4e-12
seq178 86.0 1e-11
seq128 84.2 5e-11
>seq14
Length=21378024
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||||||||| |||||||| ||||| | || || | |||||
Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || || || || || || || ||||| || | || ||||||||
Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || ||| || || |||||||||||| | ||||||||||| ||||| |||
Sbjct 6329822 TGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6329763
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| ||||| | ||||||
Sbjct 6329762 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||||||||| |||||| | ||||| | || || |||||
Sbjct 680949 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCC 680890
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| |||||||| || || || || || || ||||| || | || ||||||||
Sbjct 680889 TCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 680830
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || ||| || || |||||||||||| | ||||||||||| ||||| |||
Sbjct 680829 TGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 680770
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| ||||| | ||||||
Sbjct 680769 TTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq118
Length=6029945
Score = 140 bits (154), Expect = 8e-28
Identities = 157/207 (76%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 210915 AGAGTGGACTCTTTTTGGATGTTATAAT--CCGCAAGGGTCCTTCCATCTTCCAGCTGCT 210972
|| ||||||||||| ||||| || ||| | | ||| || | ||||||||||||||||
Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762
Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032
||||||| ||||| || | | ||||||||||||| ||||| || |||| | ||||
Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAG 3917822
Query 211033 GTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||||| || || ||||||||| |||| || | ||| | ||||| ||||| || ||
Sbjct 3917823 CCTTCACATTCTCAATGGTGTCACTGAGC--TCCATCTCCAAGGTGATAGTCTTGCCAGT 3917880
Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| ||||| | |||||||||
Sbjct 3917881 CAGGGTCTTCACAAAGATCTGCATTTT 3917907
>seq73
Length=8706776
Score = 131 bits (144), Expect = 4e-25
Identities = 164/222 (74%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| || || ||||| ||||| |||||||| || | ||||| || || ||| |
Sbjct 2651763 ACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCA--AAG--T 2651708
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||||| ||||| || || | ||| | | | |||| |||||||||| |||
Sbjct 2651707 ACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCC 2651648
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| || ||||||||||| ||| | ||||| || ||||| ||| |||||| | |||
Sbjct 2651647 TTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG 2651588
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || ||||| ||||| || || |||| || | ||||||
Sbjct 2651587 -CTAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq6
Length=30479472
Score = 131 bits (144), Expect = 4e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954
|||| || || | ||| ||| | |||||||| || || ||| | | || | | || |
Sbjct 3763748 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 3763689
Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014
|||||||||||| ||||| || || ||||| || | ||| || |||||||||| |||||
Sbjct 3763688 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3763629
Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074
|||| ||||||||||| ||| | ||||| | ||||| ||| |||| |||| || |
Sbjct 3763628 CCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCG 3763569
Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| | ||||| || || || || |||| || | ||||||
Sbjct 3763568 TAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
>seq353
Length=1223491
Score = 123 bits (136), Expect = 6e-23
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || ||||||||||| ||||| || || || | ||| || | ||||||
Sbjct 241196 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCT 241255
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || |||||||| |||| ||||| || |||
Sbjct 241256 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 241315
Query 211023 TGGATCTT 211030
||||||||
Sbjct 241316 TGGATCTT 241323
>seq279
Length=2078848
Score = 118 bits (130), Expect = 2e-21
Identities = 118/153 (77%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| | | |||||||| ||||||||||| || | ||| | | ||||||
Sbjct 1038289 AGGACCAGGTGCTGGGCTGACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCT 1038348
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || ||||||| |||| | | | ||| |||
Sbjct 1038349 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTTCTTATCC 1038408
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||| |||| ||||| |||||||||
Sbjct 1038409 TGGATCTTGGCCTTCATATTTTCAATGGTGTCA 1038441
>seq13
Length=21495731
Score = 118 bits (130), Expect = 2e-21
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974
|||||||||||||| |||||||| ||||| | || || | |||| || ||||| ||
Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||| || || || | || || ||||| || | || |||| ||| || | ||| |
Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || |||||||||||| | || |||||||| ||||| ||||| || | ||
Sbjct 9191781 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGG 9191722
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | ||| ||
Sbjct 9191721 GTCTTCACAAAGATCTGAAT 9191702
>seq26
Length=15501076
Score = 114 bits (126), Expect = 3e-20
Identities = 157/219 (72%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
||| || || || || |||| |||||||| || || ||||| || || | || |
Sbjct 10001824 AAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACG 10001883
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|| ||||||||| ||||| | || ||||| || | ||| || | |||||||| ||||||
Sbjct 10001884 TCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTC 10001943
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
||| ||||||||||| || || ||||| || || || | ||||||||| | ||
Sbjct 10001944 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTG---GTTCAACCTCCATTGT 10002000
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | || || || ||||| || | ||||||
Sbjct 10002001 AATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039
>seq93
Length=7280091
Score = 109 bits (120), Expect = 1e-18
Identities = 141/195 (72%), Gaps = 16/195 (8%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|| ||| || || ||||| ||||| |||| ||| || || ||||| || |||
Sbjct 3503839 ACAAAGCCTCAGCACAAGATGAAGGGTGGCCTCCTTCTGAATGTTGTAGTCC-------- 3503788
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
||||||||| ||||| || || ||||| || | || || |||||||||| |||
Sbjct 3503787 ------ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAA-TCC 3503735
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| ||||||||||| || || ||||| || | ||| ||| ||||||||||||
Sbjct 3503734 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGAG-GTTCAACCTCGAG 3503676
Query 211073 AGTGATCGTCTTTCC 211087
|| || ||||| ||
Sbjct 3503675 CGTAATAGTCTTCCC 3503661
>seq90
Length=7592057
Score = 100 bits (110), Expect = 7e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || |||||||| || || ||||| || || || | ||||| | ||||||
Sbjct 464131 AGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 464072
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || ||||| || || | || ||||||||
Sbjct 464071 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 464012
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||| || || || || |||||||||
Sbjct 464011 TGGATCTTGGCCTTGACATTCTCAATGGTGTCA 463979
>seq145
Length=5050978
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || |||||||| || || |||||||| || || | | ||| ||||||
Sbjct 972508 AGGACCAAGTACAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATCT 972567
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| ||||| | | || || ||||| || | |||||||||
Sbjct 972568 TCCAGCTGTTTGCCAATAAAGATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTAT 972627
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| ||| || || || || ||||||||| | || ||||| |||||||| ||
Sbjct 972628 TGGATATTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGATC 972687
Query 211083 TTTCC 211087
|| ||
Sbjct 972688 TTGCC 972692
>seq96
Length=7027464
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/86 (83%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| |||||||||||||| |||||||| || || || || | ||||||
Sbjct 4535822 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTACTC----AGAGTGCGGCCATCT 4535877
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAG 210988
||||||||||||||||| ||||| ||
Sbjct 4535878 TCCAGCTGCTTGCCTGCAAAGATGAG 4535903
>seq178
Length=4226165
Score = 86.0 bits (94), Expect = 1e-11
Identities = 146/212 (69%), Gaps = 16/212 (8%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||||| |||| || ||||| | || || | |||||
Sbjct 1706329 AGGACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTGCAGCCATCC 1706386
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || || || || | ||| || | |||||||||||
Sbjct 1706387 TCCAGCTGTTTGCCCGCAAATATCAGACATTGCTGATG----------CCTTCCTTGTCT 1706436
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || ||| || || || |||||||| ||| |||| ||| ||||| |||
Sbjct 1706437 TGCATTTTGGCTTTGACATTCTCAGTGGTGTCA----CTTCGACCTTGAGGGTGATGGTC 1706492
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||| | | || || ||||| | ||||||
Sbjct 1706493 TTGCCCATCATGGTTTTCACAAAGATCTGCAT 1706524
>seq128
Length=5608787
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|| |||||||| || || || ||| || || |||||||||||| | |||||||||
Sbjct 2708593 CCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCG 2708652
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| ||||| || ||||| ||||| | ||||||
Sbjct 2708653 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2708696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158966607040295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |