Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq14 131 1e-25 seq126 122 6e-23 seq73 98.7 7e-16 seq13 98.7 7e-16 >seq14 Length=21378024 Score = 131 bits (144), Expect = 1e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| ||||| ||| Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| || ||||| || || | || || ||||| Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGCATCCCACCTGATCA 6329849 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | |||||||| |||||||| ||||| || | |||||| | |||||||| Sbjct 6329850 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAA 6329909 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 ||| || ||||||||||| | || || || | | ||||||| || |||| Sbjct 6329910 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCA 6329962 >seq126 Length=5838822 Score = 122 bits (134), Expect = 6e-23 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | ||||| || || ||||| ||||| ||||| ||| Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| || ||||| || || | || || ||||| Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGCATCCCACCTGATCA 680856 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||||||||| |||||||| ||||| || | | |||| | ||||||| Sbjct 680857 GCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAG 680916 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 ||| || ||||||||||| | || || || | | ||||||| || |||| Sbjct 680917 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCA 680969 >seq73 Length=8706776 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | |||||||| ||||| || || || | ||| ||||||| || || Sbjct 2651547 ATGCAGATTTTCATAAAAACCCTTACGGGGAAGACTATTAG-CTCAAAGTTGAACCCTCG 2651605 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| ||||| || || || || ||||| | || || |||||| Sbjct 2651606 GACACTATAGAAAATATAAAAGCCAAGATCCAGGATAACGAAGGAATTCCTCCTGATCAA 2651665 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | | || || |||| || || ||||||||||| ||| ||||| || |||||| Sbjct 2651666 CCAAGATTGATCGTTGCTGGTAAGCAACTGGAAGATAGACGTACTTT----GACTACAAC 2651721 Query 23791 ATACAAAAAGAGTCCAC 23807 || | || |||||||| Sbjct 2651722 ATTGAGAAGGAGTCCAC 2651738 >seq13 Length=21495731 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || ||||| || || || ||||| | || || || ||||| ||||| || || ||| Sbjct 9191702 ATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 9191761 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| ||||| || ||| | || || | || || ||||| Sbjct 9191762 GACACCATCGAGAATGTCAAAGCAAAAT-TTCAAGACCAGGAGGGCATCCCACCTGATCA 9191820 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | |||||||| || ||||| || || || || |||||| | |||||||| Sbjct 9191821 GCAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAA 9191880 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 9191881 CATCCAGAAAGAGTCCAC 9191898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337958176381364