Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq14 131 1e-25
seq126 122 6e-23
seq73 98.7 7e-16
seq13 98.7 7e-16
>seq14
Length=21378024
Score = 131 bits (144), Expect = 1e-25
Identities = 171/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| ||||| || || ||||| ||||| ||||| |||
Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | ||| | |||| || ||||| || || | || || |||||
Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGCATCCCACCTGATCA 6329849
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | |||||||| |||||||| ||||| || | |||||| | ||||||||
Sbjct 6329850 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAA 6329909
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
||| || ||||||||||| | || || || | | ||||||| || ||||
Sbjct 6329910 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCA 6329962
>seq126
Length=5838822
Score = 122 bits (134), Expect = 6e-23
Identities = 169/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | ||||| || || ||||| ||||| ||||| |||
Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | ||| | |||| || ||||| || || | || || |||||
Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGCATCCCACCTGATCA 680856
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| |||||||||| |||||||| ||||| || | | |||| | |||||||
Sbjct 680857 GCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAG 680916
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
||| || ||||||||||| | || || || | | ||||||| || ||||
Sbjct 680917 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGCATCA 680969
>seq73
Length=8706776
Score = 98.7 bits (108), Expect = 7e-16
Identities = 141/197 (72%), Gaps = 5/197 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||| | |||||||| ||||| || || || | ||| ||||||| || ||
Sbjct 2651547 ATGCAGATTTTCATAAAAACCCTTACGGGGAAGACTATTAG-CTCAAAGTTGAACCCTCG 2651605
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | |||| ||||| || || || || ||||| | || || ||||||
Sbjct 2651606 GACACTATAGAAAATATAAAAGCCAAGATCCAGGATAACGAAGGAATTCCTCCTGATCAA 2651665
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
| | || || |||| || || ||||||||||| ||| ||||| || ||||||
Sbjct 2651666 CCAAGATTGATCGTTGCTGGTAAGCAACTGGAAGATAGACGTACTTT----GACTACAAC 2651721
Query 23791 ATACAAAAAGAGTCCAC 23807
|| | || ||||||||
Sbjct 2651722 ATTGAGAAGGAGTCCAC 2651738
>seq13
Length=21495731
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|| ||||| || || || ||||| | || || || ||||| ||||| || || |||
Sbjct 9191702 ATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 9191761
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | ||| ||||| || ||| | || || | || || |||||
Sbjct 9191762 GACACCATCGAGAATGTCAAAGCAAAAT-TTCAAGACCAGGAGGGCATCCCACCTGATCA 9191820
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | | |||||||| || ||||| || || || || |||||| | ||||||||
Sbjct 9191821 GCAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAA 9191880
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 9191881 CATCCAGAAAGAGTCCAC 9191898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337958176381364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |