Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq128 125 2e-23 seq90 114 3e-20 seq6 113 1e-19 seq73 107 5e-18 seq49 104 6e-17 seq14 104 6e-17 seq145 100 7e-16 seq455 96.9 8e-15 seq126 95.1 3e-14 seq263 91.5 4e-13 seq13 86.0 1e-11 seq771 84.2 5e-11 >seq128 Length=5608787 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 ||| || |||| ||||||| |||||| |||| || ||||| || ||||| ||||||||| Sbjct 329503 GGTGATGACCAAATTTACAATGTTATTGTTACTGCTCATGCATTCGTTATAATTTTCTTT 329562 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662 | |||| || |||| || || || || ||||| ||| | || || |||| || || Sbjct 329563 ATATTTATACCAATTATAATTGGTGGGTTTGGAAACTGACTAGTACCCCTAATAATCGGA 329622 Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||||||||||| || |||||| | | || |||||||| || ||| | || || ||||| Sbjct 329623 GCTCCTGATATAGCATTTCCACGTATAAATAATATAAGCTTCTGACTTCTTCCCCCTTCT 329682 Query 7723 TT 7724 || Sbjct 329683 TT 329684 Score = 96.9 bits (106), Expect = 8e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| |||| |||||||| ||||||||||| || || || | Sbjct 330083 TTCAGGATGTCCAAAAAATCAAAATAGGTGTTGATAGAGGATAGGATCCCCACCTCCAGC 330024 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 ||||||||||| ||||||||| ||| | ||| || Sbjct 330023 AGGATCAAAAAATGTAGTATTAAGATTACGATCTGT 329988 >seq90 Length=7592057 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | || ||||||||||| || |||| |||||| || | || || | |||||| Sbjct 464132 CAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATC 464073 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 464072 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 464013 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 ||||||||| ||| ||| || |||||||| Sbjct 464012 TTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980 >seq6 Length=30479472 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||| ||||| | ||| || | ||||| || || || | ||| || | |||||| | Sbjct 3763748 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 3763689 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| || ||||| ||||| ||||| |||| ||| || || || ||||| |||| Sbjct 3763688 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3763629 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 |||| || |||||||| || || ||| | ||||| |||| ||| | || | || Sbjct 3763628 CCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCG 3763569 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | | ||||| || || | ||||||||||| | ||||| Sbjct 3763568 TAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 >seq73 Length=8706776 Score = 107 bits (118), Expect = 5e-18 Identities = 158/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| ||||| ||||| || || ||||| || || | | ||||| || ||||| Sbjct 2651763 ACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTC----AAAGT 2651708 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | | |||||| || ||||| ||||| | ||| | || | |||| || || ||||| || Sbjct 2651707 ACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCC 2651648 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || |||||||| || | | ||| || ||||| |||| ||| || | | Sbjct 2651647 TTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG 2651588 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | | || ||||| ||||| | ||||||||||| | ||||| Sbjct 2651587 C-TAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 >seq49 Length=11206128 Score = 104 bits (114), Expect = 6e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| ||| |||||||||||||||||||||| Sbjct 749756 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAATATTTTAGAGATAATG 749815 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | ||||||||||| |||||||| ||||| ||| ||||| Sbjct 749816 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACA 749855 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || |||||||| || || || |||||||| || || |||||||| |||||||| Sbjct 750190 AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACATCACCA 750131 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 || |||||||| | || ||||| || || | || |||||||||||| Sbjct 750130 GCCTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 750083 >seq14 Length=21378024 Score = 104 bits (114), Expect = 6e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || || || || || || || || || || ||||||||| Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| |||| ||| ||||||||||| || || || || | ||||| || Sbjct 6329822 TGAAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6329764 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 6329763 CTTGCCCGTCA 6329753 >seq145 Length=5050978 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | || ||||||||||| || |||| ||||| || | || || |||||| Sbjct 972507 CAGGACCAAGTACAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATC 972566 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || ||| ||||| | | || || || || || || ||||||||| Sbjct 972567 TTCCAGCTGTTTGCCAATAAAGATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTA 972626 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| ||| ||| ||| || |||||||| || ||||| || | ||||| | Sbjct 972627 TTGGATATTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGAT 972686 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||| || ||| |||| | ||||| Sbjct 972687 CTTGCCTCCCAAGGTCTTTGTGAAGATCTGCAT 972719 >seq455 Length=570085 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||| ||||| ||||| || || ||||| || || | | ||||| || | ||| || | Sbjct 193678 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTAC 193619 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 ||||||||||| ||||| ||||| ||||| || | ||| || || || ||||| |||| Sbjct 193618 GTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTT 193559 Query 225614 CCTTGTCTTGGATCTT 225629 |||| | |||||||| Sbjct 193558 CCTTATTCTGGATCTT 193543 >seq126 Length=5838822 Score = 95.1 bits (104), Expect = 3e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| ||||||| | | ||| ||||| Sbjct 680949 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCC 680890 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || || || || || || || || || || ||||||||| Sbjct 680889 TCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 680830 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| |||| ||| ||||||||||| || || || || | ||||| || Sbjct 680829 TGAAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 680771 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 680770 CTTGCCCGTCA 680760 >seq263 Length=2290585 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 ||||| || ||||| |||||||||||||||||||| || |||||||| || || ||| | Sbjct 30380 TCAGGGTGCCCAAAGAATCAGAATAAATGTTGATAGAGAATAGGATCTCCACCTCCTTCT 30321 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || ||||| || |||| || | ||||| ||| |||| || Sbjct 30320 GGGTCAAAGAATATAGTGTTTAGATTTCAATCTGTTAGAA 30281 >seq13 Length=21495731 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 |||||||| ||||| |||| |||||||| | | ||| | |||| |||||||| || Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || || | || || || || || || || |||| |||||| | |||||| Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAA-TTTTGC 9191783 Query 225634 TTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 || ||| ||||||||||| || || || || | ||||| |||||||| Sbjct 9191782 TTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCC 9191729 >seq771 Length=131377 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 ||||| || ||||| ||||||||||| |||||||| || ||||||| || || || | Sbjct 110094 TCAGGGTGCCCAAAGAATCAGAATAATTGTTGATAGAGATTAGGATCTCCACCTCCCAAA 110153 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTTG 370778 || |||||||| ||||||| | |||| ||| |||| || |||| Sbjct 110154 GGGTCAAAAAATATAGTATTTAGATTTTGATCTGTTAGAAGTGTTG 110199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192340468423202