Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq128 125 2e-23
seq90 114 3e-20
seq6 113 1e-19
seq73 107 5e-18
seq49 104 6e-17
seq14 104 6e-17
seq145 100 7e-16
seq455 96.9 8e-15
seq126 95.1 3e-14
seq263 91.5 4e-13
seq13 86.0 1e-11
seq771 84.2 5e-11
>seq128
Length=5608787
Score = 125 bits (138), Expect = 2e-23
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602
||| || |||| ||||||| |||||| |||| || ||||| || ||||| |||||||||
Sbjct 329503 GGTGATGACCAAATTTACAATGTTATTGTTACTGCTCATGCATTCGTTATAATTTTCTTT 329562
Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662
| |||| || |||| || || || || ||||| ||| | || || |||| || ||
Sbjct 329563 ATATTTATACCAATTATAATTGGTGGGTTTGGAAACTGACTAGTACCCCTAATAATCGGA 329622
Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
||||||||||| || |||||| | | || |||||||| || ||| | || || |||||
Sbjct 329623 GCTCCTGATATAGCATTTCCACGTATAAATAATATAAGCTTCTGACTTCTTCCCCCTTCT 329682
Query 7723 TT 7724
||
Sbjct 329683 TT 329684
Score = 96.9 bits (106), Expect = 8e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||||||||| ||||||||||| |||| |||||||| ||||||||||| || || || |
Sbjct 330083 TTCAGGATGTCCAAAAAATCAAAATAGGTGTTGATAGAGGATAGGATCCCCACCTCCAGC 330024
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767
||||||||||| ||||||||| ||| | ||| ||
Sbjct 330023 AGGATCAAAAAATGTAGTATTAAGATTACGATCTGT 329988
>seq90
Length=7592057
Score = 114 bits (126), Expect = 3e-20
Identities = 117/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| | || ||||||||||| || |||| |||||| || | || || | ||||||
Sbjct 464132 CAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATC 464073
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || ||||| || || || || ||||||||
Sbjct 464072 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 464013
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
||||||||| ||| ||| || ||||||||
Sbjct 464012 TTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980
>seq6
Length=30479472
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553
|||| ||||| | ||| || | ||||| || || || | ||| || | |||||| |
Sbjct 3763748 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 3763689
Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613
|||||||| || ||||| ||||| ||||| |||| ||| || || || ||||| ||||
Sbjct 3763688 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3763629
Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673
|||| || |||||||| || || ||| | ||||| |||| ||| | || | ||
Sbjct 3763628 CCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCG 3763569
Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| | ||||| || || | ||||||||||| | |||||
Sbjct 3763568 TAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
>seq73
Length=8706776
Score = 107 bits (118), Expect = 5e-18
Identities = 158/222 (71%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| ||||| ||||| || || ||||| || || | | ||||| || |||||
Sbjct 2651763 ACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTC----AAAGT 2651708
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| | |||||| || ||||| ||||| | ||| | || | |||| || || ||||| ||
Sbjct 2651707 ACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCC 2651648
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || || |||||||| || | | ||| || ||||| |||| ||| || | |
Sbjct 2651647 TTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG 2651588
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| | || ||||| ||||| | ||||||||||| | |||||
Sbjct 2651587 C-TAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq49
Length=11206128
Score = 104 bits (114), Expect = 6e-17
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076
||||||| ||||| || || ||| | || ||| ||| ||||||||||||||||||||||
Sbjct 749756 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAATATTTTAGAGATAATG 749815
Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116
| ||||||||||| |||||||| ||||| ||| |||||
Sbjct 749816 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACA 749855
Score = 91.5 bits (100), Expect = 4e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|||| || |||||||| || || || |||||||| || || |||||||| ||||||||
Sbjct 750190 AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACATCACCA 750131
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578
|| |||||||| | || ||||| || || | || ||||||||||||
Sbjct 750130 GCCTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 750083
>seq14
Length=21378024
Score = 104 bits (114), Expect = 6e-17
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| ||||| |||| |||||||| | | ||| | |||||
Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || || || || || || || || || || || || |||||||||
Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823
Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| || ||| |||| ||| ||||||||||| || || || || | ||||| ||
Sbjct 6329822 TGAAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6329764
Query 225681 CTTGCCCGTCA 225691
|||||||||||
Sbjct 6329763 CTTGCCCGTCA 6329753
>seq145
Length=5050978
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| | || ||||||||||| || |||| ||||| || | || || ||||||
Sbjct 972507 CAGGACCAAGTACAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATC 972566
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| || ||| ||||| | | || || || || || || |||||||||
Sbjct 972567 TTCCAGCTGTTTGCCAATAAAGATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTA 972626
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||| ||| ||| ||| || |||||||| || ||||| || | ||||| |
Sbjct 972627 TTGGATATTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGAT 972686
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| ||| || ||| |||| | |||||
Sbjct 972687 CTTGCCTCCCAAGGTCTTTGTGAAGATCTGCAT 972719
>seq455
Length=570085
Score = 96.9 bits (106), Expect = 8e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553
|||| ||||| ||||| || || ||||| || || | | ||||| || | ||| || |
Sbjct 193678 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTAC 193619
Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613
||||||||||| ||||| ||||| ||||| || | ||| || || || ||||| ||||
Sbjct 193618 GTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTT 193559
Query 225614 CCTTGTCTTGGATCTT 225629
|||| | ||||||||
Sbjct 193558 CCTTATTCTGGATCTT 193543
>seq126
Length=5838822
Score = 95.1 bits (104), Expect = 3e-14
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| ||||| |||| ||||||| | | ||| |||||
Sbjct 680949 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCC 680890
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || || || || || || || || || || || || |||||||||
Sbjct 680889 TCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 680830
Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| || ||| |||| ||| ||||||||||| || || || || | ||||| ||
Sbjct 680829 TGAAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 680771
Query 225681 CTTGCCCGTCA 225691
|||||||||||
Sbjct 680770 CTTGCCCGTCA 680760
>seq263
Length=2290585
Score = 91.5 bits (100), Expect = 4e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732
||||| || ||||| |||||||||||||||||||| || |||||||| || || ||| |
Sbjct 30380 TCAGGGTGCCCAAAGAATCAGAATAAATGTTGATAGAGAATAGGATCTCCACCTCCTTCT 30321
Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772
|| ||||| || |||| || | ||||| ||| |||| ||
Sbjct 30320 GGGTCAAAGAATATAGTGTTTAGATTTCAATCTGTTAGAA 30281
>seq13
Length=21495731
Score = 86.0 bits (94), Expect = 1e-11
Identities = 125/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573
|||||||| ||||| |||| |||||||| | | ||| | |||| |||||||| ||
Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| || || || || | || || || || || || || |||| |||||| | ||||||
Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAA-TTTTGC 9191783
Query 225634 TTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686
|| ||| ||||||||||| || || || || | ||||| ||||||||
Sbjct 9191782 TTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCC 9191729
>seq771
Length=131377
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732
||||| || ||||| ||||||||||| |||||||| || ||||||| || || || |
Sbjct 110094 TCAGGGTGCCCAAAGAATCAGAATAATTGTTGATAGAGATTAGGATCTCCACCTCCCAAA 110153
Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTTG 370778
|| |||||||| ||||||| | |||| ||| |||| || ||||
Sbjct 110154 GGGTCAAAAAATATAGTATTTAGATTTTGATCTGTTAGAAGTGTTG 110199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192340468423202
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