Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq536 246 3e-60
seq260 188 6e-43
seq59 172 5e-38
seq299 154 1e-32
seq3 136 3e-27
seq152 118 9e-22
seq64 109 5e-19
seq2 93.3 4e-14
seq12 91.5 1e-13
>seq536
Length=337149
Score = 246 bits (272), Expect = 3e-60
Identities = 571/854 (67%), Gaps = 44/854 (5%)
Strand=Plus/Plus
Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307
|| || | ||| || || ||| ||||| ||| || ||||| |||||||| |||||||
Sbjct 201780 ACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGT 201839
Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCA----CACT 4362
|||||||| |||||||| | ||| ||||| | | ||| || | || || | ||
Sbjct 201840 GAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGC 201899
Query 4363 TTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422
|| ||| | |||| | || || |||||||| || ||||| |||| | ||| |
Sbjct 201900 TTC-AGC-ATAAGC---CTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAAT 201954
Query 4423 TAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGG 4482
| || ||||||| || |||| | || | ||| | ||||| || ||||| | | ||
Sbjct 201955 TCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGG 202014
Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542
| | | ||| | ||||||| | | | | |||||||| | | | || | | ||
Sbjct 202015 CATTGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCA 202074
Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602
| || ||||| ||||| || ||||| || ||||||||||| ||||| || ||||| |
Sbjct 202075 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 202134
Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662
| | || ||||| | |||| || || ||||| ||||
Sbjct 202135 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAA 202172
Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTG 4721
|||| || | || | || ||||| ||||| | || || | | ||| |||||
Sbjct 202173 AGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCT-CTTTG 202231
Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781
|| |||| | | || ||||| | ||||| ||||| || || || ||||| | |
Sbjct 202232 TCCCCAATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTG 202289
Query 4782 GCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838
|| || || | ||| |||| || || ||||| |||||||||||| || || ||
Sbjct 202290 GCATTGAAGAGAAATTCCCTTTCTTTGAA---GTCTTTAATATAAGTGTCAATAAGAAGA 202346
Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898
|||||||||||||||||||| ||||| || ||||| || || || || || | | |||
Sbjct 202347 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCT 202406
Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958
||||| | ||||||||| | | |||| || || || || || |||||||| | |||
Sbjct 202407 TCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCA 202466
Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018
| || ||| | || |||| || || |||||||| || ||||| |||||||| || |
Sbjct 202467 CCTGCCGCAGAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCT 202525
Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078
| |||||| | | || | | | | | || || ||| | |||||||| || || ||
Sbjct 202526 TCCCAGTGCTGAATGTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCA 202584
Query 5079 GCTTTTTTGTACAT 5092
||||| || ||||
Sbjct 202585 GCTTTCTTACACAT 202598
>seq260
Length=2306558
Score = 188 bits (208), Expect = 6e-43
Identities = 575/873 (66%), Gaps = 32/873 (4%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
|||| ||| || ||||| ||| | ||| |||| | ||||||| |||||||| |||||
Sbjct 2180008 TACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATT-AAATATTCTCCATAAAGTCAAA 2180066
Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCA 4385
| ||| | | || || || || || |||| || | || | ||
Sbjct 2180067 TGAATTTTCTACTCTGAAAACCTTG-----CTAAAGCCCAGCTTCATCATAAACCTGTGT 2180121
Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445
|| || ||||| |||||||| |||| | |||||| || ||| | || |||||||
Sbjct 2180122 GCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAACTTCACAGGC 2180181
Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505
| || | | | ||||| ||||||| | || || | | | ||| ||||||| |
Sbjct 2180182 AAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTTCTTTTACT 2180241
Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565
| | | ||||||| | || | || | |||| | || ||| | ||| || |
Sbjct 2180242 CTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGT 2180301
Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625
||||| || ||||||||||| ||||| | |||| ||| || ||||| || || ||
Sbjct 2180302 AAACCCTCATCTCTGCTAATAAGTTCACTGGAAA--CTTAGGCCAGGCATCAATCC-CTG 2180358
Query 4626 TTT-TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684
||| || | | | ||||| | |||| || || | ||||| | ||||| || || |
Sbjct 2180359 TTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCACAGCCAC 2180418
Query 4685 AAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCC 4743
||| ||||| | | | | | | |||| ||||||| |||||| | || ||
Sbjct 2180419 AAAGGCTACAACACATTCTCTGTAGGTAGCT-TCTTTGTCCCCAATCCAATGCAAGACCT 2180477
Query 4744 AGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTT 4800
| || ||||||||||| || | || ||||| | || || || || |||| ||||
Sbjct 2180478 AATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAAATTCCCTTT 2180537
Query 4801 -TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859
||| ||| ||| | |||||||| || || || |||||||||||| ||||||
Sbjct 2180538 CTTTGAAA----TCT----TTTAAGTGTCAATAAGGAGACTATACATTTCACAATGTAGT 2180589
Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919
||||| || ||||| || || | || || || | ||||||| | ||||||||| |
Sbjct 2180590 TTTTC-ATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCTGG 2180648
Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979
| |||| || || || ||||| |||||||| || ||||| |||||||| || || |
Sbjct 2180649 CTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAATTCATA 2180708
Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039
| |||||| ||||| || ||| |||| || || || | |||| | | || ||
Sbjct 2180709 ATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAGAATGTCCTTG 2180768
Query 5040 GTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAA 5099
| | | | || || || ||| |||| || |||| || || || | || ||||
Sbjct 2180769 GAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAGAAATCTGCCAA 2180828
Query 5100 ATATCAGGATA-CTGAATCGGAAGTATGACAAA 5131
|||||| | || ||| || |||| | ||||||
Sbjct 2180829 ATATCATGGTATCTG-ATAGGAAAGAAGACAAA 2180860
>seq59
Length=10161055
Score = 172 bits (190), Expect = 5e-38
Identities = 552/848 (65%), Gaps = 19/848 (2%)
Strand=Plus/Minus
Query 4266 TCGGATACTCGCTTT---TCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATA 4322
|| ||||||||| | || ||||||||||| || |||||| | ||| ||| |||||
Sbjct 9903255 TCTGATACTCGCCTACTATCAAAGAAATTAGTCTTCCCTTCTGATGAACCATTCCCCATA 9903196
Query 4323 AAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGG 4382
|| |||| ||||| | || || || | | | | | ||| | | | |
Sbjct 9903195 AAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGTCCAACTCTAGCATGAGCCTG 9903136
Query 4383 TCAGCTACAAATTCTATATACTGGCTCATG--AGTTCGCAGTTAATTCCAATTAATCTCA 4440
|| || || ||||| || |||| |||| ||| | |||| | ||||| | |||
Sbjct 9903135 TCTGCCACGAATTCAATGAACTGCTTCATCCAAGTAC--AGTTCCTCCCAATGAGCTTCA 9903078
Query 4441 CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTT 4500
|| | || | || | | ||| ||||| || | || || | |||||| | ||
Sbjct 9903077 TGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAGCATTGACGATTATTTATT 9903018
Query 4501 TTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCAC 4560
||| | | | | |||||| | | || | |||| | ||| || ||||| |||
Sbjct 9903017 TTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCAAATTCAG 9902959
Query 4561 AATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAAC 4620
| || ||||| ||||||||||| || ||||| || ||||| || | || ||||| |
Sbjct 9902958 AGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTT 9902899
Query 4621 CTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680
|| | | ||||||||||| | |||||||| ||||||||||| || || | |
Sbjct 9902898 CT-----TATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAG 9902844
Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAAT 4739
||| || |||| | || | | | | |||| ||||||| | |||| ||
Sbjct 9902843 TGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTT-CTTTGTCCCCAGTCCAACACAAG 9902785
Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AAATAATTTAC 4797
|| |||| ||||| ||||| || || || || | | || || | | | || || |
Sbjct 9902784 GCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTCC 9902725
Query 4798 TTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857
| | | | | | || ||| ||| |||| || || || | ||| |||||||||||||
Sbjct 9902724 CTGTCTTAG--GAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGTA 9902667
Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917
| ||||| ||||||| || || || | || || | |||||| | | |||||| || |
Sbjct 9902666 TGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTT 9902607
Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977
| ||||| | || | ||||| || |||| || |||| ||| |||| || || |
Sbjct 9902606 GGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTA 9902547
Query 4978 AAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTT 5037
|||||| |||||||| || ||| |||||||| || | || ||| | || |
Sbjct 9902546 GAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCCT 9902487
Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACC 5097
| | | ||| || || || | ||||| || ||||| || ||||| || ||||| ||
Sbjct 9902486 TGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGCC 9902427
Query 5098 AAATATCA 5105
||||||||
Sbjct 9902426 AAATATCA 9902419
>seq299
Length=1791600
Score = 154 bits (170), Expect = 1e-32
Identities = 290/421 (69%), Gaps = 4/421 (1%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACT-TTAGAGCTACAAGCAA 4378
||||||||||| ||||| ||| || || ||| | | | || | | ||| ||
Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGC-CTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAA 1083310
Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438
|| ||||||| |||||| |||||||||||||| | | ||||| || | ||| | |
Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250
Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498
|| || | | | ||| |||||||| || || || | || || | || || ||
Sbjct 1083249 AACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTC 1083190
Query 4499 TTTTA-TTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557
| | || |||| || | |||||||||||||| ||||| || || ||||| |
Sbjct 1083189 CCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAAGT 1083130
Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617
|| | | | |||| |||||| | ||||| || || ||||| || | ||| || ||
Sbjct 1083129 CATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGATGG 1083070
Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677
||||||||| || | ||| || |||| ||||| || || | ||||| || ||||| |
Sbjct 1083069 GACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTCCA 1083011
Query 4678 C 4678
|
Sbjct 1083010 C 1083010
Score = 82.4 bits (90), Expect = 7e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 5010 TTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAAC 5069
||||| || ||| |||| | | ||| || | ||| ||||| ||||| | ||||| ||
Sbjct 1082266 TTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAGTCAACCTCTTCTGCTGTCCAGAAG 1082207
Query 5070 GACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA 5129
|| || | || | || ||||| |||||||||||| |||||||| |||| |||||||
Sbjct 1082206 GATGCCTGTGCCTGTTCATACATTTTCCAAATATCAGGGTACTGAATTGGAAATATGACA 1082147
Query 5130 AAT 5132
|||
Sbjct 1082146 AAT 1082144
>seq3
Length=41493964
Score = 136 bits (150), Expect = 3e-27
Identities = 164/220 (75%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || ||||| || || | ||||| |||||||| ||| |||||||
Sbjct 8287481 AGCCCTTGTGAAAACAGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGAAGAATAGC 8287422
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | ||||| |||| | ||| |||| || || || || || ||||| ||||||
Sbjct 8287421 TCCACGTTCTGGCCTGGCTGCAAAATACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 8287362
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| |||| ||||||||||||||||||| ||| || | | ||
Sbjct 8287361 AGATTATAGAGGAAATATTGGTGTTGTGTTGTTTAATTTTGGTAAAGAGAAGT-TTGAAG 8287303
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
||||||| || ||| | |||| || || ||||| |||
Sbjct 8287302 --TAAAAAAAGGTGATCGAATAGCACAGCTCATTTGTGAA 8287265
>seq152
Length=4760374
Score = 118 bits (130), Expect = 9e-22
Identities = 160/220 (73%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || |||| || || | ||||| ||||| || ||| || ||||
Sbjct 2153487 AGCCCTTGTGAAAACAGACGTTCAGATAGCTCTTCCTTCTGGGTGTTATGGAAGAGTAGC 2153546
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | |||| ||||| | |||||||| ||||| || | || ||||| ||||||
Sbjct 2153547 TCCACGTCCTGGCTTGGCTGCAAAACACTTCATCGATGTAAGAGCTGGTGTCATAGATAA 2153606
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
| | ||||||||||| ||| | ||||||| ||||||||||| |||||| | | ||
Sbjct 2153607 AAATTATAGAGGAAATGTTAGTGTTGTGTTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 2153665
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
||||||||| ||| |||| || || ||||| |||
Sbjct 2153666 --TAAAAAAGGATGATCAAATAGCACAGCTCATTTGTGAA 2153703
>seq64
Length=9676502
Score = 109 bits (120), Expect = 5e-19
Identities = 95/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
||||||| ||| |||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 6349680 GGGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 6349621
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||||| || || || || || || | |||||||| ||||||||||| | | |||||
Sbjct 6349620 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATC 6349563
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || ||||| | |||| || ||
Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || || || || || ||||| |||
Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426
Query 4692 AC 4693
||
Sbjct 6351425 AC 6351424
>seq2
Length=46620681
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/130 (76%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| ||||| || || ||||||||||||||||| || || |
Sbjct 41371704 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 41371648
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | ||||| || |||||||| || | ||| || |
Sbjct 41371647 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 41371588
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 41371587 ATAAGTCAAC 41371578
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 41397863 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 41397804
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 41397803 ATAAAATCAAAGGGATT 41397787
>seq12
Length=22095427
Score = 91.5 bits (100), Expect = 1e-13
Identities = 154/220 (70%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| ||| | || || | ||||| |||||||| || |||||||
Sbjct 308678 AGCCCTTGTGAAAAC----ATTGAGATAGCTCTTCCTTCTGGGTGCTATAGAAGAATAGC 308733
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| ||||| ||||| | ||| | || || || || || || ||||| ||||||
Sbjct 308734 TCCACATTCTGGGTTGGCTGCAAAATATTTCATAGATGTAGGAGCTGGTGTCATAGATGA 308793
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||| || ||| | ||| ||||||| ||||||||||| ||| || | | ||
Sbjct 308794 AGATTATGGAAAAAATGCTGGTGTTGTGTTATTTAATTTTGGCAAAGAGAAGT-TTGAAG 308852
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
|||||||||| ||| |||| || | ||||| |||
Sbjct 308853 --TAAAAAAGGGTGATCAAATAGCACAGCACATTTGTGAA 308890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
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