Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq536 246 3e-60 seq260 188 6e-43 seq59 172 5e-38 seq299 154 1e-32 seq3 136 3e-27 seq152 118 9e-22 seq64 109 5e-19 seq2 93.3 4e-14 seq12 91.5 1e-13 >seq536 Length=337149 Score = 246 bits (272), Expect = 3e-60 Identities = 571/854 (67%), Gaps = 44/854 (5%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || || | ||| || || ||| ||||| ||| || ||||| |||||||| ||||||| Sbjct 201780 ACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGT 201839 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCA----CACT 4362 |||||||| |||||||| | ||| ||||| | | ||| || | || || | || Sbjct 201840 GAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGC 201899 Query 4363 TTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422 || ||| | |||| | || || |||||||| || ||||| |||| | ||| | Sbjct 201900 TTC-AGC-ATAAGC---CTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAAT 201954 Query 4423 TAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 | || ||||||| || |||| | || | ||| | ||||| || ||||| | | || Sbjct 201955 TCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGG 202014 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 | | | ||| | ||||||| | | | | |||||||| | | | || | | || Sbjct 202015 CATTGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCA 202074 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 | || ||||| ||||| || ||||| || ||||||||||| ||||| || ||||| | Sbjct 202075 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 202134 Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662 | | || ||||| | |||| || || ||||| |||| Sbjct 202135 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAA 202172 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTG 4721 |||| || | || | || ||||| ||||| | || || | | ||| ||||| Sbjct 202173 AGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCT-CTTTG 202231 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || |||| | | || ||||| | ||||| ||||| || || || ||||| | | Sbjct 202232 TCCCCAATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTG 202289 Query 4782 GCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || || || | ||| |||| || || ||||| |||||||||||| || || || Sbjct 202290 GCATTGAAGAGAAATTCCCTTTCTTTGAA---GTCTTTAATATAAGTGTCAATAAGAAGA 202346 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 |||||||||||||||||||| ||||| || ||||| || || || || || | | ||| Sbjct 202347 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCT 202406 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 ||||| | ||||||||| | | |||| || || || || || |||||||| | ||| Sbjct 202407 TCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCA 202466 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018 | || ||| | || |||| || || |||||||| || ||||| |||||||| || | Sbjct 202467 CCTGCCGCAGAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCT 202525 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | |||||| | | || | | | | | || || ||| | |||||||| || || || Sbjct 202526 TCCCAGTGCTGAATGTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCA 202584 Query 5079 GCTTTTTTGTACAT 5092 ||||| || |||| Sbjct 202585 GCTTTCTTACACAT 202598 >seq260 Length=2306558 Score = 188 bits (208), Expect = 6e-43 Identities = 575/873 (66%), Gaps = 32/873 (4%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 |||| ||| || ||||| ||| | ||| |||| | ||||||| |||||||| ||||| Sbjct 2180008 TACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATT-AAATATTCTCCATAAAGTCAAA 2180066 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCA 4385 | ||| | | || || || || || |||| || | || | || Sbjct 2180067 TGAATTTTCTACTCTGAAAACCTTG-----CTAAAGCCCAGCTTCATCATAAACCTGTGT 2180121 Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445 || || ||||| |||||||| |||| | |||||| || ||| | || ||||||| Sbjct 2180122 GCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAACTTCACAGGC 2180181 Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505 | || | | | ||||| ||||||| | || || | | | ||| ||||||| | Sbjct 2180182 AAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTTCTTTTACT 2180241 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | | | ||||||| | || | || | |||| | || ||| | ||| || | Sbjct 2180242 CTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGT 2180301 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 ||||| || ||||||||||| ||||| | |||| ||| || ||||| || || || Sbjct 2180302 AAACCCTCATCTCTGCTAATAAGTTCACTGGAAA--CTTAGGCCAGGCATCAATCC-CTG 2180358 Query 4626 TTT-TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684 ||| || | | | ||||| | |||| || || | ||||| | ||||| || || | Sbjct 2180359 TTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCACAGCCAC 2180418 Query 4685 AAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCC 4743 ||| ||||| | | | | | | |||| ||||||| |||||| | || || Sbjct 2180419 AAAGGCTACAACACATTCTCTGTAGGTAGCT-TCTTTGTCCCCAATCCAATGCAAGACCT 2180477 Query 4744 AGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTT 4800 | || ||||||||||| || | || ||||| | || || || || |||| |||| Sbjct 2180478 AATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAAATTCCCTTT 2180537 Query 4801 -TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||| ||| ||| | |||||||| || || || |||||||||||| |||||| Sbjct 2180538 CTTTGAAA----TCT----TTTAAGTGTCAATAAGGAGACTATACATTTCACAATGTAGT 2180589 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| || ||||| || || | || || || | ||||||| | ||||||||| | Sbjct 2180590 TTTTC-ATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCTGG 2180648 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 | |||| || || || ||||| |||||||| || ||||| |||||||| || || | Sbjct 2180649 CTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAATTCATA 2180708 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | |||||| ||||| || ||| |||| || || || | |||| | | || || Sbjct 2180709 ATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAGAATGTCCTTG 2180768 Query 5040 GTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAA 5099 | | | | || || || ||| |||| || |||| || || || | || |||| Sbjct 2180769 GAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAGAAATCTGCCAA 2180828 Query 5100 ATATCAGGATA-CTGAATCGGAAGTATGACAAA 5131 |||||| | || ||| || |||| | |||||| Sbjct 2180829 ATATCATGGTATCTG-ATAGGAAAGAAGACAAA 2180860 >seq59 Length=10161055 Score = 172 bits (190), Expect = 5e-38 Identities = 552/848 (65%), Gaps = 19/848 (2%) Strand=Plus/Minus Query 4266 TCGGATACTCGCTTT---TCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATA 4322 || ||||||||| | || ||||||||||| || |||||| | ||| ||| ||||| Sbjct 9903255 TCTGATACTCGCCTACTATCAAAGAAATTAGTCTTCCCTTCTGATGAACCATTCCCCATA 9903196 Query 4323 AAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGG 4382 || |||| ||||| | || || || | | | | | ||| | | | | Sbjct 9903195 AAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGTCCAACTCTAGCATGAGCCTG 9903136 Query 4383 TCAGCTACAAATTCTATATACTGGCTCATG--AGTTCGCAGTTAATTCCAATTAATCTCA 4440 || || || ||||| || |||| |||| ||| | |||| | ||||| | ||| Sbjct 9903135 TCTGCCACGAATTCAATGAACTGCTTCATCCAAGTAC--AGTTCCTCCCAATGAGCTTCA 9903078 Query 4441 CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTT 4500 || | || | || | | ||| ||||| || | || || | |||||| | || Sbjct 9903077 TGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAGCATTGACGATTATTTATT 9903018 Query 4501 TTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCAC 4560 ||| | | | | |||||| | | || | |||| | ||| || ||||| ||| Sbjct 9903017 TTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCAAATTCAG 9902959 Query 4561 AATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAAC 4620 | || ||||| ||||||||||| || ||||| || ||||| || | || ||||| | Sbjct 9902958 AGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTT 9902899 Query 4621 CTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680 || | | ||||||||||| | |||||||| ||||||||||| || || | | Sbjct 9902898 CT-----TATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAG 9902844 Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 ||| || |||| | || | | | | |||| ||||||| | |||| || Sbjct 9902843 TGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTT-CTTTGTCCCCAGTCCAACACAAG 9902785 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AAATAATTTAC 4797 || |||| ||||| ||||| || || || || | | || || | | | || || | Sbjct 9902784 GCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTCC 9902725 Query 4798 TTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857 | | | | | | || ||| ||| |||| || || || | ||| ||||||||||||| Sbjct 9902724 CTGTCTTAG--GAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGTA 9902667 Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917 | ||||| ||||||| || || || | || || | |||||| | | |||||| || | Sbjct 9902666 TGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTT 9902607 Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977 | ||||| | || | ||||| || |||| || |||| ||| |||| || || | Sbjct 9902606 GGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTA 9902547 Query 4978 AAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTT 5037 |||||| |||||||| || ||| |||||||| || | || ||| | || | Sbjct 9902546 GAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCCT 9902487 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACC 5097 | | | ||| || || || | ||||| || ||||| || ||||| || ||||| || Sbjct 9902486 TGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGCC 9902427 Query 5098 AAATATCA 5105 |||||||| Sbjct 9902426 AAATATCA 9902419 >seq299 Length=1791600 Score = 154 bits (170), Expect = 1e-32 Identities = 290/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACT-TTAGAGCTACAAGCAA 4378 ||||||||||| ||||| ||| || || ||| | | | || | | ||| || Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGC-CTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAA 1083310 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||||||| |||||| |||||||||||||| | | ||||| || | ||| | | Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 || || | | | ||| |||||||| || || || | || || | || || || Sbjct 1083249 AACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTC 1083190 Query 4499 TTTTA-TTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557 | | || |||| || | |||||||||||||| ||||| || || ||||| | Sbjct 1083189 CCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAAGT 1083130 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || | | | |||| |||||| | ||||| || || ||||| || | ||| || || Sbjct 1083129 CATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGATGG 1083070 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 ||||||||| || | ||| || |||| ||||| || || | ||||| || ||||| | Sbjct 1083069 GACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTCCA 1083011 Query 4678 C 4678 | Sbjct 1083010 C 1083010 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 5010 TTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAAC 5069 ||||| || ||| |||| | | ||| || | ||| ||||| ||||| | ||||| || Sbjct 1082266 TTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAGTCAACCTCTTCTGCTGTCCAGAAG 1082207 Query 5070 GACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA 5129 || || | || | || ||||| |||||||||||| |||||||| |||| ||||||| Sbjct 1082206 GATGCCTGTGCCTGTTCATACATTTTCCAAATATCAGGGTACTGAATTGGAAATATGACA 1082147 Query 5130 AAT 5132 ||| Sbjct 1082146 AAT 1082144 >seq3 Length=41493964 Score = 136 bits (150), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || || | ||||| |||||||| ||| ||||||| Sbjct 8287481 AGCCCTTGTGAAAACAGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGAAGAATAGC 8287422 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| |||| | ||| |||| || || || || || ||||| |||||| Sbjct 8287421 TCCACGTTCTGGCCTGGCTGCAAAATACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 8287362 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| |||| ||||||||||||||||||| ||| || | | || Sbjct 8287361 AGATTATAGAGGAAATATTGGTGTTGTGTTGTTTAATTTTGGTAAAGAGAAGT-TTGAAG 8287303 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||| || ||| | |||| || || ||||| ||| Sbjct 8287302 --TAAAAAAAGGTGATCGAATAGCACAGCTCATTTGTGAA 8287265 >seq152 Length=4760374 Score = 118 bits (130), Expect = 9e-22 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || |||| || || | ||||| ||||| || ||| || |||| Sbjct 2153487 AGCCCTTGTGAAAACAGACGTTCAGATAGCTCTTCCTTCTGGGTGTTATGGAAGAGTAGC 2153546 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | |||| ||||| | |||||||| ||||| || | || ||||| |||||| Sbjct 2153547 TCCACGTCCTGGCTTGGCTGCAAAACACTTCATCGATGTAAGAGCTGGTGTCATAGATAA 2153606 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 | | ||||||||||| ||| | ||||||| ||||||||||| |||||| | | || Sbjct 2153607 AAATTATAGAGGAAATGTTAGTGTTGTGTTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 2153665 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||||| ||| |||| || || ||||| ||| Sbjct 2153666 --TAAAAAAGGATGATCAAATAGCACAGCTCATTTGTGAA 2153703 >seq64 Length=9676502 Score = 109 bits (120), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||||| ||| |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 6349680 GGGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 6349621 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| ||||||||||| | | ||||| Sbjct 6349620 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATC 6349563 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || || || || || ||||| ||| Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426 Query 4692 AC 4693 || Sbjct 6351425 AC 6351424 >seq2 Length=46620681 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 41371704 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 41371648 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 41371647 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 41371588 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 41371587 ATAAGTCAAC 41371578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 41397863 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 41397804 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 41397803 ATAAAATCAAAGGGATT 41397787 >seq12 Length=22095427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| ||| | || || | ||||| |||||||| || ||||||| Sbjct 308678 AGCCCTTGTGAAAAC----ATTGAGATAGCTCTTCCTTCTGGGTGCTATAGAAGAATAGC 308733 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||| ||||| | ||| | || || || || || || ||||| |||||| Sbjct 308734 TCCACATTCTGGGTTGGCTGCAAAATATTTCATAGATGTAGGAGCTGGTGTCATAGATGA 308793 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||| || ||| | ||| ||||||| ||||||||||| ||| || | | || Sbjct 308794 AGATTATGGAAAAAATGCTGGTGTTGTGTTATTTAATTTTGGCAAAGAGAAGT-TTGAAG 308852 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||||| ||| |||| || | ||||| ||| Sbjct 308853 --TAAAAAAGGGTGATCAAATAGCACAGCACATTTGTGAA 308890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426984630141839