Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq536 338 9e-88
seq260 259 7e-64
seq59 248 1e-60
seq131 197 2e-45
seq58 194 2e-44
seq3 140 5e-28
seq299 125 1e-23
seq64 116 5e-21
seq30 114 2e-20
seq11673 102 1e-16
seq2 96.9 5e-15
seq128 89.7 7e-13
seq152 86.0 9e-12
>seq536
Length=337149
Score = 338 bits (374), Expect = 9e-88
Identities = 641/940 (68%), Gaps = 35/940 (4%)
Strand=Plus/Plus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845
|||| ||||||||||| |||| || | |||| ||||||| | || ||||| |||||
Sbjct 201725 GTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCC 201784
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
|||||| ||||| || || || | ||||| || || |||||||| ||||| | ||| ||
Sbjct 201785 CATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAAT 201844
Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTA-ATTCTG 47964
||| |||||||| | ||||||||| || | || |||| || ||||| || | ||| |
Sbjct 201845 ATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAG 201904
Query 47965 AAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTA 48024
|| || |||||||| || ||||| || || ||||||| |||||||| || |
Sbjct 201905 -CATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAA 201963
Query 48025 TAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTA 48084
| || || | || | || || || || ||||| || || || ||| |||| | |
Sbjct 201964 TTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAA 202023
Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144
|| | | |||| | | ||| |||| | | || ||||| | ||| | || |
Sbjct 202024 TTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGG 202083
Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204
|||| ||||| || | ||| |||||||| ||||| | ||| || ||||||||||| || |
Sbjct 202084 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAG 202143
Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264
|||| ||||| ||||| ||||| ||||||||||| || |
Sbjct 202144 GCATCAGTCCTCGTTTCTTGAG----------------------CCAGAAAAGAAGATTC 202181
Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCC 48321
|| | || ||||| || || | ||||| || | || || |||| |||
Sbjct 202182 TGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCA 202241
Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381
| | ||||| || |||||||| ||||||||||||||||| | ||||| ||||
Sbjct 202242 AATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGA 202299
Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441
|||| | |||| ||| ||||||| ||||| || || | ||||||||||||||| |
Sbjct 202300 GAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAG 202359
Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501
| || || ||||| || || || || || || || |||| | |||||||| || || |
Sbjct 202360 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAA 202419
Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561
| || | |||| | || |||||||||| |||||||| | ||||| || ||| | |
Sbjct 202420 CTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGA 202479
Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621
| || | | || | |||||||||| ||| | | |||| | ||||| | |
Sbjct 202480 AAGCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAA 202538
Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681
| || | || | | | || || |||||||||||||| || ||||| ||||| ||| |||
Sbjct 202539 TGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACA 202597
Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
| | || ||| || || || || || || || || ||
Sbjct 202598 TCTGCCGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637
>seq260
Length=2306558
Score = 259 bits (286), Expect = 7e-64
Identities = 628/941 (67%), Gaps = 19/941 (2%)
Strand=Plus/Plus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845
|||| |||| |||||| |||| || | ||||| ||| || | || ||||| ||||
Sbjct 2179930 GTTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCTCTCC 2179989
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
|| | ||||| ||||| || ||||| || || ||| | ||| |||||| | | ||
Sbjct 2179990 CACCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTAA-AT 2180048
Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965
||| |||||||| ||||||| ||| || | | ||| || |||| || | |
Sbjct 2180049 ATTCTCCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCAT 2180108
Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025
|| | || | ||| |||||||| ||||| ||||||| || || || || |
Sbjct 2180109 CATAAACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGT 2180168
Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085
| || || || | ||||||| | | ||||| ||||| | ||||||||| | |
Sbjct 2180169 GAACTTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATTGATAAA 2180228
Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145
||| | |||| | | ||| |||| | | || ||||| ||||| | || ||
Sbjct 2180229 TATTTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGC 2180288
Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205
| | ||| || | | ||| |||||||| ||||| | ||| | |||| | || || ||
Sbjct 2180289 AGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACTT--AGGCCAGG 2180346
Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265
||| | ||| |||| |||| | | ||||||| | ||||| || | ||||| | ||
Sbjct 2180347 CATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCC 2180406
Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322
||| || ||| |||| || || | |||| ||| | ||||| |||| |||||
Sbjct 2180407 TTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCA 2180466
Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382
| || ||| || || ||||||||| ||||||||||||| || ||||| |||||
Sbjct 2180467 ATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAG 2180526
Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442
||| | |||| ||| |||||| ||||| || || | |||||||||||||| |
Sbjct 2180527 AAATTCCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATACATTTCACA 2180582
Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502
|| | ||||| || || || || || | || ||||| ||||||| || || ||
Sbjct 2180583 ATGTAGTTTTTC-ATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAAC 2180641
Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA-AA 48561
||| | |||| || ||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 2180642 TTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 2180701
Query 48562 ATGC-TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620
|| | |||| ||| ||||||||| ||| | || |||| | | |||
Sbjct 2180702 ATTCATAAT--ATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAGA 2180759
Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680
|| || || || ||| | || || || |||| |||| || | || || || ||| |
Sbjct 2180760 ATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAGAA 2180819
Query 48681 ATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|| | ||| |||||| |||| ||| || || | |||||
Sbjct 2180820 ATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860
>seq59
Length=10161055
Score = 248 bits (274), Expect = 1e-60
Identities = 574/863 (67%), Gaps = 14/863 (2%)
Strand=Plus/Minus
Query 47836 ACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTT 47895
|||| |||||||| | ||||| || || || | || || |||||||| || ||||
Sbjct 9903270 ACATCACTCCCATCCTCTGATACTCGCCTAC-----TATCAAAGAAATTAGTCTTCCCTT 9903216
Query 47896 CCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATC 47955
| |||| ||| ||||||| |||||||||| | | | ||| || |||||
Sbjct 9903215 CTGATGAACCATTCCCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGT 9903156
Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAAT 48015
| || ||| || || || ||||| |||||||| || | |||||| ||| |
Sbjct 9903155 CCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGT 9903096
Query 48016 TCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAG 48075
|| | || || || || | || | ||||| || || | ||| ||||| || ||||||
Sbjct 9903095 TCCTCCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAG 9903036
Query 48076 CATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACA 48135
||| || ||||| || |||| | | ||| ||||| | | || | || |||
Sbjct 9903035 CATTGACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACA 9902976
Query 48136 TTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195
| || ||||| ||| | || | ||| || ||||| || || | ||| || |||||||
Sbjct 9902975 TCGGGCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATG 9902917
Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAA 48255
|||| || ||||| ||| | || ||||||||||||||| || || || |||||||
Sbjct 9902916 TGAGGCCAGGCATCAGT-----TCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAA 9902862
Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT 48315
|||| || || | | || || | || | | || ||| | ||||| ||||
Sbjct 9902861 AGAAGATTTCTCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGT 9902802
Query 48316 ---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372
|||| | || || || || |||||||| || |||||||| |||| || |
Sbjct 9902801 CCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGG 9902742
Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432
|| | ||||||| | | || | | || ||||| |||| | || || | |||| ||
Sbjct 9902741 CACTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCAT 9902682
Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492
| ||||| || || || ||||| || || | || || || | ||||| | ||||||
Sbjct 9902681 ATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTA 9902622
Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552
| || || ||||| | |||||| | ||| ||| ||| || |||| ||||||| |
Sbjct 9902621 TAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTG 9902562
Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612
| |||| || |||| |||||| ||||||||| ||| | | |||| | ||
Sbjct 9902561 CTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCC 9902502
Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672
|| | | || || || | ||| || || || |||||||| || || ||||| ||||
Sbjct 9902501 GGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTT 9902442
Query 48673 TTTTATACATATTCCATATATCA 48695
| |||||||| | ||| ||||||
Sbjct 9902441 TCTTATACATTTGCCAAATATCA 9902419
>seq131
Length=5549739
Score = 197 bits (218), Expect = 2e-45
Identities = 499/757 (66%), Gaps = 40/757 (5%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | |||| | || || |||| || || ||||| || |||
Sbjct 3233609 GACATCACTCCCATCCTCTGATGCTTGCCTAC-----TCTCAAACAAGTTAGTCTTCCCT 3233555
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954
|||| ||| |||| |||||||| |||| | |||| || | | ||| || | |||
Sbjct 3233554 TCCAGTGAATTATTCTCCATAAAGTCAA-TAGATTCTCTACTCTGAAAACCTTGTGAAAG 3233496
Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014
| | || || || || ||| | ||| ||| || || ||||||| ||
Sbjct 3233495 CTCAGCTCCAGCATGAGCCTGTCTACCACGGATTTAATGTACTGCTTCATCAAAGTGCAG 3233436
Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074
||||| ||| | || || || | | ||| |||| | ||||| ||||| || | |||
Sbjct 3233435 TTCATCCCT-TGAGCTTCACAGCCAAGGCCCCCGTGAAGAACTCCTGTTCTATCCTCACA 3233377
Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAAC 48134
|||| | ||||| | | || | | | ||| |||| | |||| ||||||||
Sbjct 3233376 GCATTGATGATTATTGCTTTTGCTCTCTGCTCTGATGGTTTGTGTAACAGGTGTTTAAA- 3233318
Query 48135 ATTAAACATGCAAAATCACAATGAAGACC-TTCATCTCTACTAATTAATTCGTTAGAAAA 48193
||| | || ||||| ||||| || | ||| || || ||| |||| | || || |||||
Sbjct 3233317 ATTCAGCAGGCAAAGTCACAGTGTAAACCCTTGAT-TCTGATAATAAGTTAATTGGAAAA 3233259
Query 48194 TGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGA 48253
|||||| |||| ||||||| | | ||||| |||||
Sbjct 3233258 TGTGAG--------------------------GCCAGAATATTGACACAAAAGAACCAGA 3233225
Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT 48313
|||||| || ||||| | | ||||| || || ||| ||| | || || ||
Sbjct 3233224 AAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAAAACATGTTCTT-GTAGGTAGCCTCTTT 3233166
Query 48314 GTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370
|| ||||| | |||||||| || ||| |||| ||||||||||| |||| ||
Sbjct 3233165 GTTCCCAATCCAACTCAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATCCTTTCAAT 3233106
Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430
|||||| ||||||| | |||| || |||||||| |||||| || || | |||||
Sbjct 3233105 AGCATTGGAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAGGAGACT 3233046
Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490
||||||| || || || ||||| | || | ||| || || || ||||| | | ||||
Sbjct 3233045 CTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGAAGCCATAGAAACAGCCCACTTC 3232986
Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550
||| || || || || | |||| ||| ||||||| |||||| |||| ||||||||
Sbjct 3232985 TGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAATTTTCATTTGCTATGCCATCACT 3232926
Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587
|| ||||| || || | ||| | |||||||||
Sbjct 3232925 TGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATAT 3232889
>seq58
Length=10378366
Score = 194 bits (214), Expect = 2e-44
Identities = 499/751 (66%), Gaps = 43/751 (6%)
Strand=Plus/Plus
Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900
||||| || || ||||| ||| | || | ||||| || || ||||| || ||||||| |
Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572
Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960
|| ||||| ||||||| |||| |||||| || | | |||| | || | || | |
Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGATAGAGCCCAGT 1968632
Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020
| || || || ||||| || ||||| || | ||||||| || |||||
Sbjct 1968633 TTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCATC 1968692
Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080
|| || || || || || | |||| || || ||||| ||||| || | ||| ||
Sbjct 1968693 CCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAATTG 1968752
Query 48081 ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAA 48140
| |||| | ||| | | | ||| | ||| || ||| | ||| |||||| |
Sbjct 1968753 ATAATTAC---TTTTATCCTCTTCTCCCACAGTGTGTAG--CAAGTATTTGAACATTGAG 1968807
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| |||||||||| |||||||| ||||| | ||| || ||||||||||||
Sbjct 1968808 CAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGA 1968856
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCC--AAAATATTGCCGCGAAAGATCCAGAAAAGA 48258
|| ||||| || | | ||| || || | || |||||| || ||||| ||||||||||
Sbjct 1968857 CCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGA 1968916
Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTC--TCTCTCCGTAACT-GGCTTCGTTGT 48315
| || |||| || ||||| || || || |||||| || | | ||| |
Sbjct 1968917 AGATTTCTTCCACATTAGCAAAGGC--TACATCATGCTCTCCACAAATAGACTT-----T 1968969
Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375
||||| | | || |||| | |||||||| ||||||||||| |||| | |||
Sbjct 1968970 TTATCC----TGATTCCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCAT 1969025
Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435
| |||| ||| | |||||| ||| || ||||| || | | || | | ||| || |
Sbjct 1969026 TGAAGATAAATTCTTTTTCTTTGGAATTTTTAATGTGA----CAATAAGGAAACTGTATA 1969081
Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495
|| | || || || ||| | || || || || ||||| || ||||| |||||||| |
Sbjct 1969082 TTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAA 1969141
Query 48496 TCTGTACCTCCGTACAAAATCG-TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554
| || | || | |||| | |||| |||| || |||| || ||| ||||||| |
Sbjct 1969142 TTTGAATTTCTTGGCTAAATTGCTTCA-CCAATTTTTCATGTATTATGCCATCAC---CT 1969197
Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAAT 48585
|| |||| || | |||||| |||||||
Sbjct 1969198 GCTAAAA--GCCAGAACATGTGCTATAAAAT 1969226
>seq3
Length=41493964
Score = 140 bits (154), Expect = 5e-28
Identities = 251/360 (70%), Gaps = 19/360 (5%)
Strand=Plus/Plus
Query 45878 CAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935
|||| || ||||| ||| ||| | | |||||||| ||| | ||| ||||| |
Sbjct 8287186 CAGTAGAACCAAAACCTCCTGAAC--CCCTTTCAGTGTCATTCAACACTTGAACTTCTTC 8287243
Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995
| ||| |||||| | || |||| | | || || || ||||||| |||||| | ||||
Sbjct 8287244 TATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATCACCTTTTTTTAC 8287303
Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055
|||||| | ||||| ||| ||| | || | || ||||| | ||||||||||||||
Sbjct 8287304 TTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCCTCTATAATCTTC 8287363
Query 46056 ATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112
|||||| || || |||| ||||| || |||| || ||| ||||| | |||||
Sbjct 8287364 ATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCCAGAACGTGGAGC 8287423
Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168
|||||||||||| ||||| || | || ||| |||| |||||||| | |||
Sbjct 8287424 TATTCTTCCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCTGTTTTCA-CAA-G 8287477
Query 46169 TCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226
|||||||| ||| || | |||| || || |||||||| | || || ||||| ||
Sbjct 8287478 GGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACTGTACAGGTCGTAGCCTGCGGC 8287537
>seq299
Length=1791600
Score = 125 bits (138), Expect = 1e-23
Identities = 271/403 (67%), Gaps = 2/403 (0%)
Strand=Plus/Minus
Query 47870 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||||| || ||||| ||||| ||||| || || || ||||||||||||||||| |||||
Sbjct 1083411 TTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAAGGGATT 1083352
Query 47930 AACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTC 47989
|||| | | ||| ||| ||||| | ||| || | ||| || || | |||||
Sbjct 1083351 TTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAATCTTTCAGCTATAAATTC 1083292
Query 47990 TATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGT 48049
||||| |||||| |||| ||||| | || || |||||| | | || ||
Sbjct 1083291 AATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGT 1083232
Query 48050 AAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTA-CCGTTTCCTCAC 48108
| |||||| || || || ||||||||| || || ||| | | || |||| ||
Sbjct 1083231 TAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTG 1083172
Query 48109 TTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCAT 48168
| || | || | | ||||| || || ||||| ||| | |||| ||||||
Sbjct 1083171 AAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAAGTCATAGAGAAGTTCTTCAT 1083112
Query 48169 CTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCC 48228
|||| | || | || || ||||||||||| || || || | || | || || | ||
Sbjct 1083111 CTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAACC 1083052
Query 48229 AAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271
| || || | || |||||||| | ||||| || ||||| ||
Sbjct 1083051 AGAAAATAGTAGC-AAAGATCCTCAGAAGAAAATTCCTTCCAC 1083010
>seq64
Length=9676502
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| |||
Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||||| || ||||| ||||||||||| || || || || || ||||| ||
Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGC 6351427
>seq30
Length=14751797
Score = 114 bits (126), Expect = 2e-20
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | ||
Sbjct 820284 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 820343
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 820344 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 820403
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 820404 TTTCTTACACCAT 820416
Score = 105 bits (116), Expect = 9e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||
Sbjct 838233 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGTGTAAACCACCTCTCAGAAAGAAGGTTA 838292
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
||||||||||| || | || ||||| || |||||| || || | ||| | |||||||
Sbjct 838293 TATGTTTCAATTGCAGCATCAATGTCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 838352
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 838353 ATATGTTGTGGTCTTTCAGCC 838373
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||| |||
Sbjct 831386 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 831445
Query 77985 CAGTC 77989
|||||
Sbjct 831446 CAGTC 831450
>seq11673
Length=1157
Score = 102 bits (112), Expect = 1e-16
Identities = 110/144 (76%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845
|||| ||||||||||| |||| || | |||| ||||||| || ||||| |||||
Sbjct 215 GTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCACTCC 274
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
||| | ||||| || || || | ||||| || || ||||| || ||||| | ||| ||
Sbjct 275 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAAT 334
Query 47906 ATTTTCCATAAAATCAAATGGATT 47929
||| |||||||| |||||||||||
Sbjct 335 ATTCTCCATAAAGTCAAATGGATT 358
>seq2
Length=46620681
Score = 96.9 bits (106), Expect = 5e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||||||||| || || | ||| || ||||||||||| || ||||| || || | || |
Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
| ||||| ||||| || || |||||||| || ||||| || ||||| || || ||||| |
Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658
Query 48283 C 48283
|
Sbjct 41377657 C 41377657
>seq128
Length=5608787
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/220 (70%), Gaps = 9/220 (4%)
Strand=Plus/Plus
Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTG 48398
|| |||||||| | |||| |||| | || | ||| |||||||| | | |||| |||
Sbjct 5393376 GCTTTCTTCTTCATACAAAGCAT-----CAATGGTATTGAAGAGAAATTCTCTTTCTTTG 5393430
Query 48399 CTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATT 48458
|||||||| | || | || | ||||||||| |||| || || || ||| | ||
Sbjct 5393431 GGATCTTTAATGGAAATGTCAGGAAGGAGACTATACCTTTCAGAATGTATGTTTGCCATG 5393490
Query 48459 GCCATCTGAAATCCGTAAAAA-CATCTC---GCTTCTGTGATCTGTACCTCCGTACAAAA 48514
|| || || || || || | | || | |||||||| || || ||||| | | |
Sbjct 5393491 GCAATTTGGAAGCCATAGATAGCAATTGTGGGCTTCTGTAATTTGAACCTCTTGGCTAGA 5393550
Query 48515 TCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554
|| ||| ||||| || ||||||||||| |||| ||| |||
Sbjct 5393551 TCCTTCTGCCAACTTTTCATTTACTATGCCATTACTTGCA 5393590
>seq152
Length=4760374
Score = 86.0 bits (94), Expect = 9e-12
Identities = 185/272 (68%), Gaps = 15/272 (6%)
Strand=Plus/Minus
Query 45964 ATTAGTTGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATC 46023
|| || || |||||| |||| || | |||| |||||| | ||||| ||| ||| |
Sbjct 2153696 ATGAGCTGTGCTATTTGATCATCCTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAAT 2153637
Query 46024 AGAATGACTCCAATTGTCCCTCTATAATCTTCATCTATTACTCCCCCTCCCACATCGATA 46083
| | || | || | |||||||||| || |||||| || || ||| ||||||||
Sbjct 2153636 AACACAACACTAACATTTCCTCTATAATTTTTATCTATGACACCAGCTCTTACATCGATG 2153577
Query 46084 CC---TTTTAGAGACAGTCCAGATCTAGGAGCTATTCTTCCATAA----CAGAATTTGGG 46136
|||| || || |||| | ||||||| |||||||||| ||||| ||
Sbjct 2153576 AAGTGTTTTGCAGCCAAGCCAGGACGTGGAGCTACTCTTCCATAACACCCAGAA----GG 2153521
Query 46137 CATAGACATCCGAATATCTGTTTTAATCAATCTCCTTTCTCC--AGGAGGGATAGTATAG 46194
| || ||| ||| |||||||| | ||| |||||||| ||| || || ||||
Sbjct 2153520 AAGAGCTATCTGAACGTCTGTTTTCA-CAA-GGGCTTTCTCCATAGGTGGTATTCTATAA 2153463
Query 46195 TCGTACGCACTGTATAAATCATATCCTGCTGC 46226
|| || |||||||| | ||||| ||||| ||
Sbjct 2153462 TCATAAGCACTGTACAGGTCATAGCCTGCAGC 2153431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694560405617120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |