Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq82 91.5 6e-14
>seq82
Length=8104705
Score = 91.5 bits (100), Expect = 6e-14
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168
||||| || |||| |||||| | || | ||| ||||| || | |||| || |||| ||
Sbjct 34662 ATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGG-TGAATGGGGAGCTGTC 34604
Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228
||||| |||| ||| |||| | |||||| | ||||||| || || ||||| |||||
Sbjct 34603 CTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAG 34544
Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255
||||||| |||| || | |||||||
Sbjct 34543 CTATTCCCTGCTTACCTACATGATTGC 34517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190067821000630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |