Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq82 91.5 6e-14 >seq82 Length=8104705 Score = 91.5 bits (100), Expect = 6e-14 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || |||| |||||| | || | ||| ||||| || | |||| || |||| || Sbjct 34662 ATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGG-TGAATGGGGAGCTGTC 34604 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||| |||| | |||||| | ||||||| || || ||||| ||||| Sbjct 34603 CTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAG 34544 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 ||||||| |||| || | ||||||| Sbjct 34543 CTATTCCCTGCTTACCTACATGATTGC 34517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190067821000630