Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14 122 2e-22 seq126 107 4e-18 seq13 102 2e-16 seq90 93.3 1e-13 >seq14 Length=21378024 Score = 122 bits (134), Expect = 2e-22 Identities = 155/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| |||||||||||||| | | ||| | ||||| || | Sbjct 6329937 CAAG-TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCCA 6329879 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || || || || | |||||| || | | ||| || ||||| ||||||| Sbjct 6329878 GCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAA 6329819 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||||||| |||| | | |||| ||| ||| || || || || || || | Sbjct 6329818 TTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCT 6329762 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| || |||||||| |||| |||||| Sbjct 6329761 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| |||||| ||||||| | | ||| ||||| || | Sbjct 680944 CAAG-TGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCCA 680886 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || || || || | |||||| || | | ||| || ||||| ||||||| Sbjct 680885 GCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAA 680826 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||||||| |||| | | |||| ||| ||| || || || || || || | Sbjct 680825 TTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCT 680769 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| | |||||||| |||| |||||| Sbjct 680768 TGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq13 Length=21495731 Score = 102 bits (112), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 ||||| |||||||| |||||||||||||| | | ||| | |||| ||||| ||| Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || || || |||||| || | | ||| || |||| ||||||| |||| | Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| ||| || || || || || || ||||| | Sbjct 9191781 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATC 9191725 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||| ||| || Sbjct 9191724 AGGGTCTTCACAAAGATCTGAAT 9191702 >seq90 Length=7592057 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| ||||| || || || ||||| ||||| || | | || | ||||||| Sbjct 464131 AGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 464072 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| |||||||||||||| | | ||| || ||||| | Sbjct 464071 TCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGT 464014 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 |||| || || |||||| |||| | | |||| Sbjct 464013 CTTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153636259704093