Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq14 122 2e-22
seq126 107 4e-18
seq13 102 2e-16
seq90 93.3 1e-13
>seq14
Length=21378024
Score = 122 bits (134), Expect = 2e-22
Identities = 155/211 (73%), Gaps = 7/211 (3%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || |||||||| |||||||||||||| | | ||| | ||||| || |
Sbjct 6329937 CAAG-TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCCA 6329879
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || || || || || | |||||| || | | ||| || ||||| |||||||
Sbjct 6329878 GCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAA 6329819
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073
|||| ||||||| |||| | | |||| ||| ||| || || || || || || |
Sbjct 6329818 TTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCT 6329762
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||| || |||||||| |||| ||||||
Sbjct 6329761 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 107 bits (118), Expect = 4e-18
Identities = 152/211 (72%), Gaps = 7/211 (3%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || |||||||| |||||| ||||||| | | ||| ||||| || |
Sbjct 680944 CAAG-TGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCCA 680886
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || || || || || | |||||| || | | ||| || ||||| |||||||
Sbjct 680885 GCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAA 680826
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073
|||| ||||||| |||| | | |||| ||| ||| || || || || || || |
Sbjct 680825 TTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCT 680769
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||| | |||||||| |||| ||||||
Sbjct 680768 TGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 102 bits (112), Expect = 2e-16
Identities = 145/203 (71%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964
||||| |||||||| |||||||||||||| | | ||| | |||| ||||| |||
Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| || || || || |||||| || | | ||| || |||| ||||||| |||| |
Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782
Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|||||| |||| | | |||| ||| ||| || || || || || || ||||| |
Sbjct 9191781 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATC 9191725
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| |||| ||| ||
Sbjct 9191724 AGGGTCTTCACAAAGATCTGAAT 9191702
>seq90
Length=7592057
Score = 93.3 bits (102), Expect = 1e-13
Identities = 114/154 (74%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||| ||||| || || || ||||| ||||| || | | || | |||||||
Sbjct 464131 AGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 464072
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||| ||||| |||||||||||||| | | ||| || ||||| |
Sbjct 464071 TCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGT 464014
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
|||| || || |||||| |||| | | ||||
Sbjct 464013 CTTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153636259704093
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |