Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq14 167 5e-36
seq126 152 1e-31
seq13 136 8e-27
seq73 118 2e-21
seq455 113 9e-20
seq90 109 1e-18
seq178 102 2e-16
seq24 98.7 2e-15
seq1607 95.1 3e-14
seq145 95.1 3e-14
seq118 91.5 3e-13
seq663 89.7 1e-12
seq203 89.7 1e-12
seq127 89.7 1e-12
seq39 89.7 1e-12
seq26 89.7 1e-12
seq5 87.8 4e-12
>seq14
Length=21378024
Score = 167 bits (184), Expect = 5e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||||||||| |||| || | ||| ||||| ||||||||||| || |
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || ||||| || ||||| |||| ||| || || ||| ||
Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||| || || ||||| || | ||||| ||||| | || ||
Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||||| ||||| || || ||||||||
Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||||||||| |||| || | ||| ||||| |||||| |||| || |
Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||| |||||||||| || ||||| || ||||| || | ||| || || ||| ||
Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||| || || ||||| || | ||||| ||||| | || ||
Sbjct 680844 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 680785
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||||| ||||| || || ||||||||
Sbjct 680784 TCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 136 bits (150), Expect = 8e-27
Identities = 165/225 (73%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934
||| | ||||| ||| |||| | || ||| ||||| ||||||||||| || | ||
Sbjct 9191926 ACCTCTCAGGCAAAGCACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAG 9191867
Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994
|||||| |||||||||| ||||| || ||||| |||| | | || || ||| || ||
Sbjct 9191866 AGTGCGGTCATCCTCTAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGAT 9191807
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
||||||| |||||| | |||||||| || | ||||| ||||| | ||||| ||
Sbjct 9191806 GCCCTCCTGGTCTTGAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 9191747
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| ||||| || ||| ||||| || || ||||| ||
Sbjct 9191746 GAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
>seq73
Length=8706776
Score = 118 bits (130), Expect = 2e-21
Identities = 165/228 (72%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | || || ||||| | ||| || || | ||||||||||||
Sbjct 2651769 ACCACCACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCA-- 2651712
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| | || | ||| || ||||| || || |||| |||||| | | |||| ||| ||
Sbjct 2651711 AAG--TACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGG 2651654
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || || || |||||||| ||||||| | || ||||||||||| | ||| ||
Sbjct 2651653 AATTCCTTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAAC 2651594
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||| | || ||||| ||||| | || || | ||| ||||||||
Sbjct 2651593 TTTGAG-CTAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq455
Length=570085
Score = 113 bits (124), Expect = 9e-20
Identities = 165/229 (72%), Gaps = 7/229 (3%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
|| |||| | || | || || ||||| | ||| || || | |||||||||||||
Sbjct 193686 ACTACCATGAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGA 193627
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || || ||||| |||||||| || || |||||||||| || ||| || ||| |
Sbjct 193626 CAAG-GTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAG 193568
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| || ||||| | |||||||| ||||||| | || ||||| ||| ||| |
Sbjct 193567 GAATTCCTTCCTTATTCTGGATCTTGGCTTTTATATTTTCTATAGT----AAAGGTTCAA 193512
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| | |||||| || ||||| ||| | || | || | ||| ||||||||
Sbjct 193511 CCTTGAGAGTAATAGTCTTCCCCAT-AAGGGTTTTATGAAAATCTGCAT 193464
>seq90
Length=7592057
Score = 109 bits (120), Expect = 1e-18
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || | || ||| || |||| ||| | ||| ||| || ||||| ||||||||||
Sbjct 464147 ACCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGA 464088
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || || || || ||||||||||||| | || ||||| ||
Sbjct 464087 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 464028
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039
|| |||||||||||||||||||| || || || | || || |||||
Sbjct 464027 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 447649 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 447707
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 453770 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 453828
>seq178
Length=4226165
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 16/221 (7%)
Strand=Plus/Plus
Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938
||||||| ||| ||||| || | || ||||| |||| ||||| || | || |||
Sbjct 1706320 CGCAGGCAAAGGACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTG 1706377
Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998
| ||||||||| || ||||| || ||||| |||| || ||| || || ||
Sbjct 1706378 CAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACATTGCTG----------ATGCCT 1706427
Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058
||||||||||| || || ||||| || | || | ||||| ||||||| | |||
Sbjct 1706428 TCCTTGTCTTGCATTTTGGCTTTGACATTCTCAGTGGTGTC----ACTTCGACCTTGAGG 1706483
Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||| ||| || || || || ||||||||
Sbjct 1706484 GTGATGGTCTTGCCCATCATGGTTTTCACAAAGATCTGCAT 1706524
>seq24
Length=16432509
Score = 98.7 bits (108), Expect = 2e-15
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 15017489 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 15017431
>seq1607
Length=19272
Score = 95.1 bits (104), Expect = 3e-14
Identities = 158/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || | || | | || |||| || | ||| ||| || |||||| |||||||||
Sbjct 6406 ACCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGA 6347
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||| |||| || || ||| || ||||||||||| | || ||||| ||
Sbjct 6346 GAGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGG 6287
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| | ||||| |||||||||||| || || | || | | ||| | || ||
Sbjct 6286 GATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGAGTCACTGGGCTCCAC 6230
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||||||||||| ||||| || || ||||||||
Sbjct 6229 CTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182
>seq145
Length=5050978
Score = 95.1 bits (104), Expect = 3e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| || |||||||||||||||| | ||| | ||||| || || ||||| || |||
Sbjct 972528 TTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATCTTCCAGCTGTTTGCCAATAAA 972587
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|||||| | || || ||| || || | ||||||| |||||| ||||| || || |
Sbjct 972588 GATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTATTGGATATTTGCCTTGACATT 972647
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || ||||| | || || || |||||||| |||| || ||| |||||
Sbjct 972648 CTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGATCTTGCCTCCCAAGGTCTTTGT 972707
Query 283088 GAATATCTGCAT 283099
||| ||||||||
Sbjct 972708 GAAGATCTGCAT 972719
>seq118
Length=6029945
Score = 91.5 bits (100), Expect = 3e-13
Identities = 162/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGT--CAG 282930
||||| | ||| ||||| ||||| ||| ||||| ||||| ||| | | |||
Sbjct 3917682 CCACCCCTCAGACGAAGGACCAGG------GTGGACTCTTTCTGGATATTGCAATATCAG 3917735
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
||| |||| |||||| || || || || || |||||||| | | | |||||| |
Sbjct 3917736 AAAGAGTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAG 3917795
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCG 283049
|||| || || || || | | |||| || || || | || || ||||| | |||| |
Sbjct 3917796 GAATGCCTTCTTTATCCTTGTTCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCA 3917855
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| | || ||||| ||||| || |||| ||||| || || |||||||||||
Sbjct 3917856 TCTCCAAG-GTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3917907
>seq663
Length=188379
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 33375 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 33433
>seq203
Length=3504862
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 3034815 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3034757
>seq127
Length=5758938
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1450118 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1450060
>seq39
Length=12813240
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 12120418 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 12120476
>seq26
Length=15501076
Score = 89.7 bits (98), Expect = 1e-12
Identities = 157/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||| || | || |||||||| || ||| || || || |||||||||||||
Sbjct 10001815 ACCACCATTAAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGA 10001874
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | ||| || ||||| || | |||||||| | | ||| || | | ||
Sbjct 10001875 CTCAGTACGTCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGG 10001934
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| || |||||||| || ||||| | || ||||| || | ||| ||
Sbjct 10001935 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAAC 10001991
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| | || | || || ||||| ||||||||
Sbjct 10001992 CTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039
>seq5
Length=30734500
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839
|||||||| || | | ||| ||| || |||||||| || |||| | ||||||||
Sbjct 17169913 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGC 17169972
Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899
|| |||| | ||| |||| |||||||| || || ||| | | |||||||| |||||||
Sbjct 17169973 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTTCCCACGAAGTTCTGAGCCAAATTCACG 17170032
Query 273900 ATAGTC 273905
||||||
Sbjct 17170033 ATAGTC 17170038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046571786167882
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