Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14 167 5e-36 seq126 152 1e-31 seq13 136 8e-27 seq73 118 2e-21 seq455 113 9e-20 seq90 109 1e-18 seq178 102 2e-16 seq24 98.7 2e-15 seq1607 95.1 3e-14 seq145 95.1 3e-14 seq118 91.5 3e-13 seq663 89.7 1e-12 seq203 89.7 1e-12 seq127 89.7 1e-12 seq39 89.7 1e-12 seq26 89.7 1e-12 seq5 87.8 4e-12 >seq14 Length=21378024 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| |||| || | ||| ||||| ||||||||||| || | Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || ||||| || ||||| |||| ||| || || ||| || Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| || || ||||| || | ||||| ||||| | || || Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| |||| || | ||| ||||| |||||| |||| || | Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||| |||||||||| || ||||| || ||||| || | ||| || || ||| || Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| || || ||||| || | ||||| ||||| | || || Sbjct 680844 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 680785 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 680784 TCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq13 Length=21495731 Score = 136 bits (150), Expect = 8e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 ||| | ||||| ||| |||| | || ||| ||||| ||||||||||| || | || Sbjct 9191926 ACCTCTCAGGCAAAGCACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAG 9191867 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 |||||| |||||||||| ||||| || ||||| |||| | | || || ||| || || Sbjct 9191866 AGTGCGGTCATCCTCTAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGAT 9191807 Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||||||| |||||| | |||||||| || | ||||| ||||| | ||||| || Sbjct 9191806 GCCCTCCTGGTCTTGAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 9191747 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| || ||| ||||| || || ||||| || Sbjct 9191746 GAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702 >seq73 Length=8706776 Score = 118 bits (130), Expect = 2e-21 Identities = 165/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || || ||||| | ||| || || | |||||||||||| Sbjct 2651769 ACCACCACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCA-- 2651712 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| | || | ||| || ||||| || || |||| |||||| | | |||| ||| || Sbjct 2651711 AAG--TACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGG 2651654 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || || || |||||||| ||||||| | || ||||||||||| | ||| || Sbjct 2651653 AATTCCTTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAAC 2651594 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||| | || ||||| ||||| | || || | ||| |||||||| Sbjct 2651593 TTTGAG-CTAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 >seq455 Length=570085 Score = 113 bits (124), Expect = 9e-20 Identities = 165/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 || |||| | || | || || ||||| | ||| || || | ||||||||||||| Sbjct 193686 ACTACCATGAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGA 193627 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || || ||||| |||||||| || || |||||||||| || ||| || ||| | Sbjct 193626 CAAG-GTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAG 193568 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||| | |||||||| ||||||| | || ||||| ||| ||| | Sbjct 193567 GAATTCCTTCCTTATTCTGGATCTTGGCTTTTATATTTTCTATAGT----AAAGGTTCAA 193512 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | |||||| || ||||| ||| | || | || | ||| |||||||| Sbjct 193511 CCTTGAGAGTAATAGTCTTCCCCAT-AAGGGTTTTATGAAAATCTGCAT 193464 >seq90 Length=7592057 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || ||| || |||| ||| | ||| ||| || ||||| |||||||||| Sbjct 464147 ACCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGA 464088 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || ||||||||||||| | || ||||| || Sbjct 464087 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 464028 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || |||||||||||||||||||| || || || | || || ||||| Sbjct 464027 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 447649 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 447707 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 453770 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 453828 >seq178 Length=4226165 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 16/221 (7%) Strand=Plus/Plus Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938 ||||||| ||| ||||| || | || ||||| |||| ||||| || | || ||| Sbjct 1706320 CGCAGGCAAAGGACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTG 1706377 Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 | ||||||||| || ||||| || ||||| |||| || ||| || || || Sbjct 1706378 CAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACATTGCTG----------ATGCCT 1706427 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||||||||| || || ||||| || | || | ||||| ||||||| | ||| Sbjct 1706428 TCCTTGTCTTGCATTTTGGCTTTGACATTCTCAGTGGTGTC----ACTTCGACCTTGAGG 1706483 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||| ||| || || || || |||||||| Sbjct 1706484 GTGATGGTCTTGCCCATCATGGTTTTCACAAAGATCTGCAT 1706524 >seq24 Length=16432509 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 15017489 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 15017431 >seq1607 Length=19272 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || | | || |||| || | ||| ||| || |||||| ||||||||| Sbjct 6406 ACCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGA 6347 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||| |||| || || ||| || ||||||||||| | || ||||| || Sbjct 6346 GAGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGG 6287 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || | ||||| |||||||||||| || || | || | | ||| | || || Sbjct 6286 GATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGAGTCACTGGGCTCCAC 6230 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||||||||||| ||||| || || |||||||| Sbjct 6229 CTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182 >seq145 Length=5050978 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||||| | ||| | ||||| || || ||||| || ||| Sbjct 972528 TTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATCTTCCAGCTGTTTGCCAATAAA 972587 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | || || ||| || || | ||||||| |||||| ||||| || || | Sbjct 972588 GATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTATTGGATATTTGCCTTGACATT 972647 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| | || || || |||||||| |||| || ||| ||||| Sbjct 972648 CTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGATCTTGCCTCCCAAGGTCTTTGT 972707 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 972708 GAAGATCTGCAT 972719 >seq118 Length=6029945 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGT--CAG 282930 ||||| | ||| ||||| ||||| ||| ||||| ||||| ||| | | ||| Sbjct 3917682 CCACCCCTCAGACGAAGGACCAGG------GTGGACTCTTTCTGGATATTGCAATATCAG 3917735 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| |||| |||||| || || || || || |||||||| | | | |||||| | Sbjct 3917736 AAAGAGTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAG 3917795 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCG 283049 |||| || || || || | | |||| || || || | || || ||||| | |||| | Sbjct 3917796 GAATGCCTTCTTTATCCTTGTTCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCA 3917855 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | || ||||| ||||| || |||| ||||| || || ||||||||||| Sbjct 3917856 TCTCCAAG-GTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3917907 >seq663 Length=188379 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 33375 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 33433 >seq203 Length=3504862 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3034815 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3034757 >seq127 Length=5758938 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1450118 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1450060 >seq39 Length=12813240 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 12120418 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 12120476 >seq26 Length=15501076 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||| || | || |||||||| || ||| || || || ||||||||||||| Sbjct 10001815 ACCACCATTAAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGA 10001874 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||| || ||||| || | |||||||| | | ||| || | | || Sbjct 10001875 CTCAGTACGTCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGG 10001934 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| || ||||| | || ||||| || | ||| || Sbjct 10001935 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAAC 10001991 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| | || | || || ||||| |||||||| Sbjct 10001992 CTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039 >seq5 Length=30734500 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 |||||||| || | | ||| ||| || |||||||| || |||| | |||||||| Sbjct 17169913 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGC 17169972 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || |||| | ||| |||| |||||||| || || ||| | | |||||||| ||||||| Sbjct 17169973 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTTCCCACGAAGTTCTGAGCCAAATTCACG 17170032 Query 273900 ATAGTC 273905 |||||| Sbjct 17170033 ATAGTC 17170038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046571786167882