Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq14 122 6e-23
seq126 104 2e-17
seq13 102 6e-17
seq118 82.4 5e-11
>seq14
Length=21378024
Score = 122 bits (134), Expect = 6e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || |||| ||| | | ||||| ||| || ||| ||| || ||||||||||||||
Sbjct 6329960 ATGCCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCT 6329901
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| ||| ||| | || |||||||| || || ||||| |||| |||||||||||| |
Sbjct 6329900 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGT 6329841
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286
|| | || ||||| | | | | || |||| | ||| | |||||||| || ||
Sbjct 6329840 GGGATGCCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 6329782
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| ||||| ||||||||||| ||||| |||||
Sbjct 6329781 AACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || |||| ||| | | ||||| ||| || ||| ||| || |||||| |||||||
Sbjct 680967 ATGCCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCT 680908
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| ||| | | | || |||||||| || || ||||| || | |||||||||||| |
Sbjct 680907 GAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGT 680848
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286
|| | || ||||| | | | | || |||| | ||| | |||||||| || ||
Sbjct 680847 GGGATGCCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 680789
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| ||||| | ||||||||| ||||| |||||
Sbjct 680788 AACCTCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 102 bits (112), Expect = 6e-17
Identities = 159/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173
|||||||| | | ||||| || || ||| ||| || |||||||||||||| | |||
Sbjct 9191925 CCTCTCAGGCAAAGCACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGA 9191866
Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233
||| || || || ||||| || || ||||| |||| | |||||||||| | || |
Sbjct 9191865 GTGCGGTCATCCTCTAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATG 9191806
Query 44234 CCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTC 44292
|| |||| | | | | || ||||| | ||| | |||||||| || || |||||
Sbjct 9191805 CCCTCCTGGT-CTTGAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 9191747
Query 44293 CACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || ||||| || | ||||||||||| ||||| || ||
Sbjct 9191746 GAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
>seq118
Length=6029945
Score = 82.4 bits (90), Expect = 5e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| ||||||||||| || |||||||| | | || ||| || | ||| | ||||| ||
Sbjct 3917750 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTA 3917809
Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302
||| | |||| ||||| | | |||||||| | |||| ||||| || ||
Sbjct 3917810 TCCTTGTTCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATA 3917869
Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||||||||| ||||| |||||
Sbjct 3917870 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3917904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359935632298011
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |