Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14 122 6e-23 seq126 104 2e-17 seq13 102 6e-17 seq118 82.4 5e-11 >seq14 Length=21378024 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| ||| | | ||||| ||| || ||| ||| || |||||||||||||| Sbjct 6329960 ATGCCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCT 6329901 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| ||| | || |||||||| || || ||||| |||| |||||||||||| | Sbjct 6329900 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGT 6329841 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || ||||| | | | | || |||| | ||| | |||||||| || || Sbjct 6329840 GGGATGCCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 6329782 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 6329781 AACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| ||| | | ||||| ||| || ||| ||| || |||||| ||||||| Sbjct 680967 ATGCCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCT 680908 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| | | | || |||||||| || || ||||| || | |||||||||||| | Sbjct 680907 GAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGT 680848 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || ||||| | | | | || |||| | ||| | |||||||| || || Sbjct 680847 GGGATGCCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 680789 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| ||||| | ||||||||| ||||| ||||| Sbjct 680788 AACCTCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq13 Length=21495731 Score = 102 bits (112), Expect = 6e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173 |||||||| | | ||||| || || ||| ||| || |||||||||||||| | ||| Sbjct 9191925 CCTCTCAGGCAAAGCACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGA 9191866 Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233 ||| || || || ||||| || || ||||| |||| | |||||||||| | || | Sbjct 9191865 GTGCGGTCATCCTCTAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATG 9191806 Query 44234 CCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTC 44292 || |||| | | | | || ||||| | ||| | |||||||| || || ||||| Sbjct 9191805 CCCTCCTGGT-CTTGAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 9191747 Query 44293 CACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || ||||| || | ||||||||||| ||||| || || Sbjct 9191746 GAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702 >seq118 Length=6029945 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || |||||||| | | || ||| || | ||| | ||||| || Sbjct 3917750 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTA 3917809 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| | |||| ||||| | | |||||||| | |||| ||||| || || Sbjct 3917810 TCCTTGTTCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATA 3917869 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||||||||| ||||| ||||| Sbjct 3917870 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3917904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359935632298011