Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq331 266 5e-66 seq13 154 2e-32 seq203 91.5 2e-13 seq19 91.5 2e-13 >seq331 Length=1449978 Score = 266 bits (294), Expect = 5e-66 Identities = 424/601 (71%), Gaps = 8/601 (1%) Strand=Plus/Plus Query 8952 GCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTCATGAGTAT 9011 ||| || ||||| | || || | || || | |||||||| || || ||| | ||| Sbjct 1418402 GCCAGCAATTTGCCTGGTAAATTACTCAACGAACTGGGTAAGTCCATGTTTCAGTAATAT 1418461 Query 9012 GGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCTCAAATGCA 9069 |||||||||||| | || ||| | |||| |||| | || ||| | ||| | Sbjct 1418462 GGAATTGTTGTATATAAACTGTTGA--TAGTTGTACTCCTGGTCATGAATTTGAAAGGTG 1418519 Query 9070 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9129 || |||| || | |||||||||||| | |||||||||| ||| | ||| | |||||| Sbjct 1418520 TCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGAAATATGGTTTTGG 1418579 Query 9130 TACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188 |||||||| | | ||| ||||| || || | |||| ||| | || || ||||| Sbjct 1418580 TACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCC 1418638 Query 9189 GCTGAGCTGCTGAACGTATTGCGTCACG-ATAATGTTGATGGTTTCCCCGATAATGATGA 9247 | | |||||||| || | | ||| | ||| || ||||| ||||| || | || | Sbjct 1418639 ATTCAAGTGCTGAACATAGT-CTTCAATCACAATTTTAATGGTCTCCCCTATTAATATTA 1418697 Query 9248 GTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACAT 9307 ||| | |||||||||| ||| ||| ||| ||||||||||| ||||| ||||||| Sbjct 1418698 GTCTGCTTGTCTGGAACAACCACTCATCATCCCACTCTGGATGTTCCTGTTTAAGAACAT 1418757 Query 9308 CGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCA 9367 ||||||| | || |||||| |||||||| || || |||||||| || ||||| || | Sbjct 1418758 CGCACACTCGATTATGTTCCTGTAGCCAGATTGTTGCATACATCATCAGACCAGGCACTA 1418817 Query 9368 GGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGA 9427 | ||||| ||| || || || || | | | || ||| || || | ||||| |||| Sbjct 1418818 GACCAAAGACCTTCTGCCCCACTGCAAACTGAAGGTGTTCAGGGACGTGAGGAGGGTAGA 1418877 Query 9428 TCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGAT 9487 |||| | |||||| ||||||||| ||| ||||||| || || ||||||| ||||| Sbjct 1418878 TCATCTCCACCTGAGTGTCTTTGACTATGGGAGGATACACCTCTCCATCAATCACCTGAT 1418937 Query 9488 ACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCGTCTCTCCAT 9547 | || | ||||| || |||||||| ||||||||| ||| | || | || || |||| Sbjct 1418938 ATTTTAGTTTTCTATCCTTGAAGAGGCGCAGCTTATGTTGTCTATCCAGAGTTTCACCAT 1418997 Query 9548 A 9548 | Sbjct 1418998 A 1418998 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/287 (68%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| ||||| | |||| || |||||||||| || | || | |||| Sbjct 1417969 AAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAGAGGCAGTGTTAATGATC 1418028 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || | ||||| || || ||||| || ||||| || || || || || Sbjct 1418029 TTAAAGCCTTCTTCTCCTCCAAAAGTGCTTGGTTTCCAATAGTGAGGAGAACACATAGGA 1418088 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || ||| || | ||| | |||||| || || |||| || | ||| ||||| ||| Sbjct 1418089 TTACCCAAAAGTC-TTTAAAGGAGAATGGTGCGCCCATTTCCACCATGGTCTCATTAAAG 1418147 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||||| ||| | | || | ||||| || || | | Sbjct 1418148 ATAGCATCAGGACGAGGCTTTTCCACCAGGAAGGCAGGATAAAACTCCAAGGCATCAATG 1418207 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || | || ||||| | || || || || ||||| |||||||| Sbjct 1418208 TCACAATAGAGGGCTTCCAACTCTGCCGCCATTTCCTTCTCTCCTGT 1418254 >seq13 Length=21495731 Score = 154 bits (170), Expect = 2e-32 Identities = 183/247 (74%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 9239 TAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTT 9298 |||| || |||| || |||||||||| |||| ||| ||| ||||||||||| |||| Sbjct 3826194 TAAT-ATTAGTCTGGTCGTCTGGAACAACCGCTCATCATCCCACTCTGGATGTTCCTGTT 3826136 Query 9299 TCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCC 9358 | || |||||||| || | || ||||||| ||||| || ||||| |||||||| || | Sbjct 3826135 TAAGCACATCGCATACTCGATTATGTTCCCGTAGCCAAATTGTGGCATACATCATCAGAC 3826076 Query 9359 CAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGG 9418 |||| || || ||||| |||| || || ||||| | | | || ||| || || | | Sbjct 3826075 CAGGCACTAGACCAAAGACCTCCTGCCCCACAGCAAACTGAAGGTGTTCAGGGACATGAG 3826016 Query 9419 GAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9478 | || |||| ||| | ||| || ||||||||| | ||| ||||||| || || |||| Sbjct 3826015 GGGGGTAGAGCATCTCCACTTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCATCAA 3825956 Query 9479 TCATCTG 9485 ||| ||| Sbjct 3825955 TCACCTG 3825949 Score = 136 bits (150), Expect = 6e-27 Identities = 212/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | | | || ||||| ||||| ||||| | |||| || |||||||||| Sbjct 3827903 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAG 3827844 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| |||| || ||||| ||||| || || ||||| |||||||| || Sbjct 3827843 AGGCAGTGTTGATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGT 3827784 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 || || || || || ||| || ||||| | |||||| || || |||| || | Sbjct 3827783 GAGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCGCCCATTTCCA 3827724 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| ||||||||||||| || | | || | Sbjct 3827723 CCATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGA 3827664 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || || || || ||||| |||| Sbjct 3827663 ACTCCACGGCATCAATGTCACCATAGAGAGCTTCCAACTCTGCGGCCATTTCCTTCTCTC 3827604 Query 8583 CTG 8585 ||| Sbjct 3827603 CTG 3827601 Score = 93.3 bits (102), Expect = 6e-14 Identities = 205/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || |||||| | |||| || || || | |||||||| || || | Sbjct 3826777 CTTACCCTGCCAGCAATTTGTCTGCTGAATGACTCAACAAACTGGGTAAGTCCATGTTCC 3826718 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||||| |||||||||| || ||| | |||| |||| | || ||| | Sbjct 3826717 AGTAAAATGGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTACTCCTGGTCATGAATTT 3826660 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | |||||||||| ||| |||| Sbjct 3826659 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATAC 3826600 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | |||||||||||||| | | ||| ||||| || || | |||| ||| | || Sbjct 3826599 GGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAG 3826541 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239 || ||||| || | ||||| || || | | || | | ||| || ||||| ||||| || Sbjct 3826540 TGATAGCCACTCAAGTGCTGGACATAGT-CTTCAATCACAATTTTAATGGTCTCCCCTAT 3826482 >seq203 Length=3504862 Score = 91.5 bits (100), Expect = 2e-13 Identities = 208/309 (67%), Gaps = 7/309 (2%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | | | || ||||| ||||| ||||| | |||| || |||||||| | Sbjct 2598888 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATCG 2598947 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGT----CTCCGCCGAAGGTGCTGGGCTTCCAG 8398 || | |||| | || || | || |||| || || ||||| |||||||| Sbjct 2598948 AGGCAGTGTTGATGTTCTTAAAGGAGAAGTGGTTCTCCTCCAAAAGTGCTTGGCTTCCAA 2599007 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCC-ATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 || || || || || | | || || | || ||||| |||||||| || | |||| Sbjct 2599008 TAGTGAGGAGATCATAT-AGGATCACCCAAAAGTCCTTTCAGGGAGAATGGTGATCCCAT 2599066 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | ||| ||||||| ||||||| || ||||| ||||||||||||| || | | Sbjct 2599067 TTCCACCATGGTCTCACCAAAGATGG-GTCAGGACGAGGCTTTTCCACCAGGAGGGCAGG 2599125 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 || | ||||| || || | || || || ||||| | || || || || | ||| Sbjct 2599126 ATAGAACTCCATGGCATCAATGTTACCTTAGAGGGCTTCCAACTCTGCGGCCATTTTCTT 2599185 Query 8578 TTCTCCTGT 8586 |||||||| Sbjct 2599186 CTCTCCTGT 2599194 >seq19 Length=19581918 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || || || ||| ||| ||| || Sbjct 10751032 TCACCTATGAGGATGAGACGGGTGGTCTGGAAGAGCTGTTCATCATCCCAGGTTGGGTGC 10750973 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 10750972 TCGGCTTTCAGCAGGTCACACACGCGGTTGTGCTCGCGTAGCCAGAGTGTGGCATAGAGC 10750913 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| |||| || || || |||| Sbjct 10750912 ATGAGCCCGGGAAGCAGCCCAAACACCTCCTGGCCCACCGCCA 10750870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716764940336320