Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq331 266 5e-66
seq13 154 2e-32
seq203 91.5 2e-13
seq19 91.5 2e-13
>seq331
Length=1449978
Score = 266 bits (294), Expect = 5e-66
Identities = 424/601 (71%), Gaps = 8/601 (1%)
Strand=Plus/Plus
Query 8952 GCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTCATGAGTAT 9011
||| || ||||| | || || | || || | |||||||| || || ||| | |||
Sbjct 1418402 GCCAGCAATTTGCCTGGTAAATTACTCAACGAACTGGGTAAGTCCATGTTTCAGTAATAT 1418461
Query 9012 GGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCTCAAATGCA 9069
|||||||||||| | || ||| | |||| |||| | || ||| | ||| |
Sbjct 1418462 GGAATTGTTGTATATAAACTGTTGA--TAGTTGTACTCCTGGTCATGAATTTGAAAGGTG 1418519
Query 9070 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9129
|| |||| || | |||||||||||| | |||||||||| ||| | ||| | ||||||
Sbjct 1418520 TCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGAAATATGGTTTTGG 1418579
Query 9130 TACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188
|||||||| | | ||| ||||| || || | |||| ||| | || || |||||
Sbjct 1418580 TACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCC 1418638
Query 9189 GCTGAGCTGCTGAACGTATTGCGTCACG-ATAATGTTGATGGTTTCCCCGATAATGATGA 9247
| | |||||||| || | | ||| | ||| || ||||| ||||| || | || |
Sbjct 1418639 ATTCAAGTGCTGAACATAGT-CTTCAATCACAATTTTAATGGTCTCCCCTATTAATATTA 1418697
Query 9248 GTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACAT 9307
||| | |||||||||| ||| ||| ||| ||||||||||| ||||| |||||||
Sbjct 1418698 GTCTGCTTGTCTGGAACAACCACTCATCATCCCACTCTGGATGTTCCTGTTTAAGAACAT 1418757
Query 9308 CGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCA 9367
||||||| | || |||||| |||||||| || || |||||||| || ||||| || |
Sbjct 1418758 CGCACACTCGATTATGTTCCTGTAGCCAGATTGTTGCATACATCATCAGACCAGGCACTA 1418817
Query 9368 GGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGA 9427
| ||||| ||| || || || || | | | || ||| || || | ||||| ||||
Sbjct 1418818 GACCAAAGACCTTCTGCCCCACTGCAAACTGAAGGTGTTCAGGGACGTGAGGAGGGTAGA 1418877
Query 9428 TCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGAT 9487
|||| | |||||| ||||||||| ||| ||||||| || || ||||||| |||||
Sbjct 1418878 TCATCTCCACCTGAGTGTCTTTGACTATGGGAGGATACACCTCTCCATCAATCACCTGAT 1418937
Query 9488 ACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCGTCTCTCCAT 9547
| || | ||||| || |||||||| ||||||||| ||| | || | || || ||||
Sbjct 1418938 ATTTTAGTTTTCTATCCTTGAAGAGGCGCAGCTTATGTTGTCTATCCAGAGTTTCACCAT 1418997
Query 9548 A 9548
|
Sbjct 1418998 A 1418998
Score = 95.1 bits (104), Expect = 2e-14
Identities = 194/287 (68%), Gaps = 1/287 (0%)
Strand=Plus/Plus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| ||||| ||||| | |||| || |||||||||| || | || | ||||
Sbjct 1417969 AAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAGAGGCAGTGTTAATGATC 1418028
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| || | ||||| || || ||||| || ||||| || || || || ||
Sbjct 1418029 TTAAAGCCTTCTTCTCCTCCAAAAGTGCTTGGTTTCCAATAGTGAGGAGAACACATAGGA 1418088
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| ||| || | ||| | |||||| || || |||| || | ||| ||||| |||
Sbjct 1418089 TTACCCAAAAGTC-TTTAAAGGAGAATGGTGCGCCCATTTCCACCATGGTCTCATTAAAG 1418147
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
|| || | ||||| ||||||||||||| ||| | | || | ||||| || || | |
Sbjct 1418148 ATAGCATCAGGACGAGGCTTTTCCACCAGGAAGGCAGGATAAAACTCCAAGGCATCAATG 1418207
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
|| | || ||||| | || || || || ||||| ||||||||
Sbjct 1418208 TCACAATAGAGGGCTTCCAACTCTGCCGCCATTTCCTTCTCTCCTGT 1418254
>seq13
Length=21495731
Score = 154 bits (170), Expect = 2e-32
Identities = 183/247 (74%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 9239 TAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTT 9298
|||| || |||| || |||||||||| |||| ||| ||| ||||||||||| ||||
Sbjct 3826194 TAAT-ATTAGTCTGGTCGTCTGGAACAACCGCTCATCATCCCACTCTGGATGTTCCTGTT 3826136
Query 9299 TCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCC 9358
| || |||||||| || | || ||||||| ||||| || ||||| |||||||| || |
Sbjct 3826135 TAAGCACATCGCATACTCGATTATGTTCCCGTAGCCAAATTGTGGCATACATCATCAGAC 3826076
Query 9359 CAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGG 9418
|||| || || ||||| |||| || || ||||| | | | || ||| || || | |
Sbjct 3826075 CAGGCACTAGACCAAAGACCTCCTGCCCCACAGCAAACTGAAGGTGTTCAGGGACATGAG 3826016
Query 9419 GAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9478
| || |||| ||| | ||| || ||||||||| | ||| ||||||| || || ||||
Sbjct 3826015 GGGGGTAGAGCATCTCCACTTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCATCAA 3825956
Query 9479 TCATCTG 9485
||| |||
Sbjct 3825955 TCACCTG 3825949
Score = 136 bits (150), Expect = 6e-27
Identities = 212/303 (70%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | | | || ||||| ||||| ||||| | |||| || ||||||||||
Sbjct 3827903 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAG 3827844
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| |||| || ||||| ||||| || || ||||| |||||||| ||
Sbjct 3827843 AGGCAGTGTTGATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGT 3827784
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
|| || || || || ||| || ||||| | |||||| || || |||| || |
Sbjct 3827783 GAGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCGCCCATTTCCA 3827724
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| ||||||| |||||||| | ||||| ||||||||||||| || | | || |
Sbjct 3827723 CCATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGA 3827664
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
|||||| || || | ||| || || || || | || || || || ||||| ||||
Sbjct 3827663 ACTCCACGGCATCAATGTCACCATAGAGAGCTTCCAACTCTGCGGCCATTTCCTTCTCTC 3827604
Query 8583 CTG 8585
|||
Sbjct 3827603 CTG 3827601
Score = 93.3 bits (102), Expect = 6e-14
Identities = 205/300 (68%), Gaps = 8/300 (3%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || |||||| | |||| || || || | |||||||| || || |
Sbjct 3826777 CTTACCCTGCCAGCAATTTGTCTGCTGAATGACTCAACAAACTGGGTAAGTCCATGTTCC 3826718
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061
| | ||||| |||||||||| || ||| | |||| |||| | || ||| |
Sbjct 3826717 AGTAAAATGGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTACTCCTGGTCATGAATTT 3826660
Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121
||| | || |||| || | |||||||||||| | |||||||||| ||| ||||
Sbjct 3826659 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATAC 3826600
Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180
| |||||||||||||| | | ||| ||||| || || | |||| ||| | ||
Sbjct 3826599 GGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAG 3826541
Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239
|| ||||| || | ||||| || || | | || | | ||| || ||||| ||||| ||
Sbjct 3826540 TGATAGCCACTCAAGTGCTGGACATAGT-CTTCAATCACAATTTTAATGGTCTCCCCTAT 3826482
>seq203
Length=3504862
Score = 91.5 bits (100), Expect = 2e-13
Identities = 208/309 (67%), Gaps = 7/309 (2%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | | | || ||||| ||||| ||||| | |||| || |||||||| |
Sbjct 2598888 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATCG 2598947
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGT----CTCCGCCGAAGGTGCTGGGCTTCCAG 8398
|| | |||| | || || | || |||| || || ||||| ||||||||
Sbjct 2598948 AGGCAGTGTTGATGTTCTTAAAGGAGAAGTGGTTCTCCTCCAAAAGTGCTTGGCTTCCAA 2599007
Query 8399 TACCCCGGGGAGCAGATGACGTTCGCC-ATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457
|| || || || || | | || || | || ||||| |||||||| || | ||||
Sbjct 2599008 TAGTGAGGAGATCATAT-AGGATCACCCAAAAGTCCTTTCAGGGAGAATGGTGATCCCAT 2599066
Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517
|| | ||| ||||||| ||||||| || ||||| ||||||||||||| || | |
Sbjct 2599067 TTCCACCATGGTCTCACCAAAGATGG-GTCAGGACGAGGCTTTTCCACCAGGAGGGCAGG 2599125
Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577
|| | ||||| || || | || || || ||||| | || || || || | |||
Sbjct 2599126 ATAGAACTCCATGGCATCAATGTTACCTTAGAGGGCTTCCAACTCTGCGGCCATTTTCTT 2599185
Query 8578 TTCTCCTGT 8586
||||||||
Sbjct 2599186 CTCTCCTGT 2599194
>seq19
Length=19581918
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || ||||||||||| || || || ||| ||| ||| ||
Sbjct 10751032 TCACCTATGAGGATGAGACGGGTGGTCTGGAAGAGCTGTTCATCATCCCAGGTTGGGTGC 10750973
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| |||||| | || ||||| | |||||| || | ||||||| ||||| || | |
Sbjct 10750972 TCGGCTTTCAGCAGGTCACACACGCGGTTGTGCTCGCGTAGCCAGAGTGTGGCATAGAGC 10750913
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
|||||||| || | ||| ||||| |||| || || || ||||
Sbjct 10750912 ATGAGCCCGGGAAGCAGCCCAAACACCTCCTGGCCCACCGCCA 10750870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716764940336320
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