Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14 140 8e-28 seq126 125 2e-23 seq13 120 7e-22 >seq14 Length=21378024 Score = 140 bits (154), Expect = 8e-28 Identities = 157/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 6329734 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 6329791 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| || ||||| ||||| || || ||||| || || |||| Sbjct 6329792 ACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAGC 6329851 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || |||||||| || ||||| | ||||| | ||||| ||| Sbjct 6329852 AGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAACA 6329911 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 6329912 TCCAGAAAGAGTCCACCCTGCA-CTTG 6329937 >seq126 Length=5838822 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || | || || || || |||||||||||||| | ||| || | Sbjct 680741 CAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 680798 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| || ||||| ||||| || || ||||| || || |||| Sbjct 680799 ACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAGC 680858 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || |||||||| || ||||| ||||| | ||||| | | Sbjct 680859 AGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGCA 680918 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 680919 TCCAGAAAGAGTCCACCCTGCA-CTTG 680944 >seq13 Length=21495731 Score = 120 bits (132), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || | ||| || || |||||||||||||| | ||| || | Sbjct 9191705 CAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 9191762 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||| |||| ||| | || || ||||| || || |||| Sbjct 9191763 ACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATCAGC 9191822 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || |||||||| || |||| | ||||| | ||||| ||| Sbjct 9191823 AGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAACA 9191882 Query 178102 TCCAAAAAGAATCAACACT 178120 |||| ||||| || || || Sbjct 9191883 TCCAGAAAGAGTCCACTCT 9191901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203538677112702