Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq14 140 8e-28
seq126 125 2e-23
seq13 120 7e-22
>seq14
Length=21378024
Score = 140 bits (154), Expect = 8e-28
Identities = 157/207 (76%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 6329734 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 6329791
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| |||||| || ||||| ||||| || || ||||| || || ||||
Sbjct 6329792 ACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAGC 6329851
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || || || || || |||||||| || ||||| | ||||| | ||||| |||
Sbjct 6329852 AGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAACA 6329911
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| ||||| || || ||||| ||||
Sbjct 6329912 TCCAGAAAGAGTCCACCCTGCA-CTTG 6329937
>seq126
Length=5838822
Score = 125 bits (138), Expect = 2e-23
Identities = 154/207 (74%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || |||||||||||||| | ||| || |
Sbjct 680741 CAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 680798
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| |||||| || ||||| ||||| || || ||||| || || ||||
Sbjct 680799 ACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAGC 680858
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || || || || || |||||||| || ||||| ||||| | ||||| | |
Sbjct 680859 AGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGCA 680918
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| ||||| || || ||||| ||||
Sbjct 680919 TCCAGAAAGAGTCCACCCTGCA-CTTG 680944
>seq13
Length=21495731
Score = 120 bits (132), Expect = 7e-22
Identities = 147/199 (74%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || | ||| || || |||||||||||||| | ||| || |
Sbjct 9191705 CAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 9191762
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| |||||| ||| |||| ||| | || || ||||| || || ||||
Sbjct 9191763 ACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATCAGC 9191822
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || || || || || |||||||| || |||| | ||||| | ||||| |||
Sbjct 9191823 AGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAACA 9191882
Query 178102 TCCAAAAAGAATCAACACT 178120
|||| ||||| || || ||
Sbjct 9191883 TCCAGAAAGAGTCCACTCT 9191901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203538677112702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |