Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq57 154 2e-32
seq83 87.8 2e-12
>seq57
Length=15126812
Score = 154 bits (170), Expect = 2e-32
Identities = 578/890 (65%), Gaps = 21/890 (2%)
Strand=Plus/Minus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|| ||||| || |||| || | || | || || | |||||||| || || |||||
Sbjct 10750314 ACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTCTAGT 10750255
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781
|| ||| |||||||||| ||||| || || || |||||||| || | | | ||||
Sbjct 10750254 GAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAA--AACCCA 10750197
Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841
||| || | || || || |||||||| || | || |||||| ||| ||||
Sbjct 10750196 TTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCAATTCA 10750137
Query 16842 TTCCTATAAGACGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900
|||| || | || | || || | || || || | || | ||||| || ||
Sbjct 10750136 TTCCAATGA-ACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCA 10750078
Query 16901 TCCTTAATAATA--CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958
| ||| || || | |||| | ||| | ||| | | | || || || ||||
Sbjct 10750077 TTGACAATTATTTCCTTG--ACTCACTACTCTAATGGTTTGTATACCAGGTGCTTGAACA 10750020
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
||| || | ||||| || ||||| ||||| |||| || ||||| || | |||||||
Sbjct 10750019 CCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATG 10749961
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| ||| ||||||| | ||||||||| | || || || |||||||
Sbjct 10749960 TGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAA 10749901
Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138
||| | | ||| | | ||||| || | | |||| | || || || ||||| |
Sbjct 10749900 AGATTT--CTTTCGCAGCA-GCAAAAGCTACAACATGTTCTCCATAGGTAGCCTCTTTAT 10749844
Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198
|||||| | | | || || || ||| || ||| |||| |||| ||||
Sbjct 10749843 CCACAATCCAACACAGGGTCACGTCTGCCTT---CTTCATACAAGGCATCCTTTCAATGG 10749787
Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258
| || || | || |||| | | || || | || | || || || || ||||
Sbjct 10749786 CATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATAAGGAGACTGT 10749727
Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318
|||| | || |||||||| |||||||| || || || || || || || |||||||| |
Sbjct 10749726 ACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTG 10749667
Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378
||||||||||| | ||||| ||| | | ||||| || || || || || || |
Sbjct 10749666 TAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGG 10749607
Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAA--ATATTTTTCGTCCGGTGTAAGAACGCG 17436
| || || || |||| | | || || || |||||| || || | || |
Sbjct 10749606 CAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGCTTCAGGGCTTC 10749547
Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496
||||| || | || ||||| | ||| || | || | |||| | || || | |||
Sbjct 10749546 CCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCC-AGAAGGAGGCCCTGG 10749488
Query 17497 CTTT-TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545
|||| || ||||| | ||| ||||||| ||||| || || || | ||||
Sbjct 10749487 CTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAACA 10749438
>seq83
Length=10591344
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
||||| || || || || || |||||||| ||||| |||||||| |||||||| || ||
Sbjct 7358140 ATATAAGTGTCAATAAGGAGACTGTACATCTCGGAATGTATGTTTTCCATGGCAATTTGG 7358199
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331
|| || || || || |||||||| | |||||||||||
Sbjct 7358200 AACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTC 7358237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517475097350640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |