Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq57 154 2e-32 seq83 87.8 2e-12 >seq57 Length=15126812 Score = 154 bits (170), Expect = 2e-32 Identities = 578/890 (65%), Gaps = 21/890 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || |||| || | || | || || | |||||||| || || ||||| Sbjct 10750314 ACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTCTAGT 10750255 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||| |||||||||| ||||| || || || |||||||| || | | | |||| Sbjct 10750254 GAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAA--AACCCA 10750197 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 ||| || | || || || |||||||| || | || |||||| ||| |||| Sbjct 10750196 TTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCAATTCA 10750137 Query 16842 TTCCTATAAGACGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 |||| || | || | || || | || || || | || | ||||| || || Sbjct 10750136 TTCCAATGA-ACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCA 10750078 Query 16901 TCCTTAATAATA--CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958 | ||| || || | |||| | ||| | ||| | | | || || || |||| Sbjct 10750077 TTGACAATTATTTCCTTG--ACTCACTACTCTAATGGTTTGTATACCAGGTGCTTGAACA 10750020 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 ||| || | ||||| || ||||| ||||| |||| || ||||| || | ||||||| Sbjct 10750019 CCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATG 10749961 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| ||| ||||||| | ||||||||| | || || || ||||||| Sbjct 10749960 TGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAA 10749901 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 ||| | | ||| | | ||||| || | | |||| | || || || ||||| | Sbjct 10749900 AGATTT--CTTTCGCAGCA-GCAAAAGCTACAACATGTTCTCCATAGGTAGCCTCTTTAT 10749844 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 |||||| | | | || || || ||| || ||| |||| |||| |||| Sbjct 10749843 CCACAATCCAACACAGGGTCACGTCTGCCTT---CTTCATACAAGGCATCCTTTCAATGG 10749787 Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || || | || |||| | | || || | || | || || || || |||| Sbjct 10749786 CATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATAAGGAGACTGT 10749727 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| | || |||||||| |||||||| || || || || || || || |||||||| | Sbjct 10749726 ACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTG 10749667 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 ||||||||||| | ||||| ||| | | ||||| || || || || || || | Sbjct 10749666 TAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGG 10749607 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAA--ATATTTTTCGTCCGGTGTAAGAACGCG 17436 | || || || |||| | | || || || |||||| || || | || | Sbjct 10749606 CAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGCTTCAGGGCTTC 10749547 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||||| || | || ||||| | ||| || | || | |||| | || || | ||| Sbjct 10749546 CCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCC-AGAAGGAGGCCCTGG 10749488 Query 17497 CTTT-TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545 |||| || ||||| | ||| ||||||| ||||| || || || | |||| Sbjct 10749487 CTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAACA 10749438 >seq83 Length=10591344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| || || || || || |||||||| ||||| |||||||| |||||||| || || Sbjct 7358140 ATATAAGTGTCAATAAGGAGACTGTACATCTCGGAATGTATGTTTTCCATGGCAATTTGG 7358199 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || |||||||| | ||||||||||| Sbjct 7358200 AACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTC 7358237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517475097350640