Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 3e-29
seq56 89.7 5e-13
seq175 87.8 2e-12
>seq6
Length=52350410
Score = 143 bits (158), Expect = 3e-29
Identities = 456/696 (66%), Gaps = 17/696 (2%)
Strand=Plus/Minus
Query 15943 GTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGG-ATTAGTAG-CTGAA 16000
|||||| ||||| ||| | ||||| ||| | || ||||| | ||| || |||||
Sbjct 1187409 GTTAGTCTTTCCTTCTGGTAAAATATTCTCCCTGAAGTCAAATGATATTTCTACTCTGAA 1187350
Query 16001 AATATC-TTAGAGTACCCCAGTTCC-GTAACTAATC-TATCTGCTACAAATTCTATATAT 16057
||| | ||| | | |||||| ||| ||| | | ||||| |||||||| || ||
Sbjct 1187349 AATCTTGTTAAAATTG---AGTTCCAGTA--TAAGCCTGTCTGCCACAAATTCAATGTAC 1187295
Query 16058 TGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAAT 16117
|| |||||| ||||| |||| || || || || | |||| ||| || |
Sbjct 1187294 TGCTTCATTAAAGTACAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATC 1187235
Query 16118 TGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTA 16177
| | ||||||| || || | ||| || || || |||| || || ||| |
Sbjct 1187234 TCCTATTCTATCCTGACAGCATTGACAATTATTTCCTTGACTCGCTGCTCTGATGGTTTG 1187175
Query 16178 TGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTG 16237
|| | ||| || ||||| || || || || || || ||||| || || ||| ||
Sbjct 1187174 TGTACCAAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTA 1187115
Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297
||||| || |||||||| || | || ||||| ||| ||||| | | ||||||| |
Sbjct 1187114 ATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTT 1187055
Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357
| ||||| || || ||||||| || || || |||| |||| ||| | ||||
Sbjct 1187054 GGTGCAAAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCT 1186995
Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417
| | || || ||||| | |||||| | ||| || || | | | | |
Sbjct 1186994 CCATTGGTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCT---TCACA 1186938
Query 16418 CAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATAT 16475
| ||||||||| ||||| || | | | ||| |||| | |||| | | |||
Sbjct 1186937 GGAAGCATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTA--ATAG 1186880
Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535
| || ||| | || | ||||||||| || || ||||||| || ||||| | || || |
Sbjct 1186879 AAGTGTCAGTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACC 1186820
Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595
|| ||| || ||||| || | ||||| ||||| | ||||| ||||||| ||| |
Sbjct 1186819 CAATGAAACAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTT 1186760
Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631
||||||| | | ||||| ||||||||||| ||||
Sbjct 1186759 CATTCACTGTGTCATCACTGGCAGCAAAAAAAGCCA 1186724
>seq56
Length=15139244
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| ||||||||||| || || |||||||| || | || ||||| |||| ||||||
Sbjct 9265278 TCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCTTT 9265219
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||||||||| |||||||| ||||| || ||||| | || || |||| ||||| ||
Sbjct 9265218 AGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGGCC 9265159
Query 16346 ATTAATCGTTCC 16357
| | || ||||
Sbjct 9265158 ACCACTCTTTCC 9265147
>seq175
Length=2612143
Score = 87.8 bits (96), Expect = 2e-12
Identities = 260/401 (65%), Gaps = 4/401 (1%)
Strand=Plus/Minus
Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441
||||||| | |||| || ||||||| || | | | || ||||| || | |||
Sbjct 1473361 ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTA 1473302
Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501
|| || |||| | | || ||| | || || | ||| |||||||| ||||| ||
Sbjct 1473301 AATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATC 1473242
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|||||||| ||||| ||| |||| ||| |||||||| || ||||||| | |
Sbjct 1473241 TCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACG 1473182
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || ||| || || || ||| || ||||| || || | || || | |||
Sbjct 1473181 TGCACGTCCT----AATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCA 1473126
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCT 16681
||||| || || ||||| || |||| || | || | | |||| | ||| |
Sbjct 1473125 AAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAA 1473066
Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741
| ||| || |||| || | || |||| ||||| ||| | | || | |||
Sbjct 1473065 GGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTA 1473006
Query 16742 TACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
||||| |||||||||||| ||| || || ||||| | |||
Sbjct 1473005 TACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGAC 1472965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511344732573360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |