Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq56 89.7 5e-13 seq175 87.8 2e-12 >seq6 Length=52350410 Score = 143 bits (158), Expect = 3e-29 Identities = 456/696 (66%), Gaps = 17/696 (2%) Strand=Plus/Minus Query 15943 GTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGG-ATTAGTAG-CTGAA 16000 |||||| ||||| ||| | ||||| ||| | || ||||| | ||| || ||||| Sbjct 1187409 GTTAGTCTTTCCTTCTGGTAAAATATTCTCCCTGAAGTCAAATGATATTTCTACTCTGAA 1187350 Query 16001 AATATC-TTAGAGTACCCCAGTTCC-GTAACTAATC-TATCTGCTACAAATTCTATATAT 16057 ||| | ||| | | |||||| ||| ||| | | ||||| |||||||| || || Sbjct 1187349 AATCTTGTTAAAATTG---AGTTCCAGTA--TAAGCCTGTCTGCCACAAATTCAATGTAC 1187295 Query 16058 TGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAAT 16117 || |||||| ||||| |||| || || || || | |||| ||| || | Sbjct 1187294 TGCTTCATTAAAGTACAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATC 1187235 Query 16118 TGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTA 16177 | | ||||||| || || | ||| || || || |||| || || ||| | Sbjct 1187234 TCCTATTCTATCCTGACAGCATTGACAATTATTTCCTTGACTCGCTGCTCTGATGGTTTG 1187175 Query 16178 TGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTG 16237 || | ||| || ||||| || || || || || || ||||| || || ||| || Sbjct 1187174 TGTACCAAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTA 1187115 Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 ||||| || |||||||| || | || ||||| ||| ||||| | | ||||||| | Sbjct 1187114 ATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTT 1187055 Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | ||||| || || ||||||| || || || |||| |||| ||| | |||| Sbjct 1187054 GGTGCAAAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCT 1186995 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 | | || || ||||| | |||||| | ||| || || | | | | | Sbjct 1186994 CCATTGGTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCT---TCACA 1186938 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATAT 16475 | ||||||||| ||||| || | | | ||| |||| | |||| | | ||| Sbjct 1186937 GGAAGCATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTA--ATAG 1186880 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | || ||| | || | ||||||||| || || ||||||| || ||||| | || || | Sbjct 1186879 AAGTGTCAGTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACC 1186820 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 || ||| || ||||| || | ||||| ||||| | ||||| ||||||| ||| | Sbjct 1186819 CAATGAAACAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTT 1186760 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 ||||||| | | ||||| ||||||||||| |||| Sbjct 1186759 CATTCACTGTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq56 Length=15139244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| || || |||||||| || | || ||||| |||| |||||| Sbjct 9265278 TCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCTTT 9265219 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||| |||||||| ||||| || ||||| | || || |||| ||||| || Sbjct 9265218 AGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGGCC 9265159 Query 16346 ATTAATCGTTCC 16357 | | || |||| Sbjct 9265158 ACCACTCTTTCC 9265147 >seq175 Length=2612143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 260/401 (65%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||||| | |||| || ||||||| || | | | || ||||| || | ||| Sbjct 1473361 ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTA 1473302 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 || || |||| | | || ||| | || || | ||| |||||||| ||||| || Sbjct 1473301 AATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATC 1473242 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 |||||||| ||||| ||| |||| ||| |||||||| || ||||||| | | Sbjct 1473241 TCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACG 1473182 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || ||| || || || ||| || ||||| || || | || || | ||| Sbjct 1473181 TGCACGTCCT----AATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCA 1473126 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCT 16681 ||||| || || ||||| || |||| || | || | | |||| | ||| | Sbjct 1473125 AAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAA 1473066 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 | ||| || |||| || | || |||| ||||| ||| | | || | ||| Sbjct 1473065 GGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTA 1473006 Query 16742 TACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||||| |||||||||||| ||| || || ||||| | ||| Sbjct 1473005 TACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGAC 1472965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511344732573360