Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 3e-15 >seq19 Length=34640225 Score = 96.9 bits (106), Expect = 3e-15 Identities = 213/318 (67%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 18795 CTTGGCCCCATT-TACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCA 18853 ||||| |||| | || || ||||||||||| ||||| || | ||| | ||||| || Sbjct 4394067 CTTGGGCCCAGTGTATGGTTTCCAGTGGAGGCATTTCGGGGTGGACCACAAAGATATGCA 4394126 Query 18854 ATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913 ||| | | | |||||| | || || |||||| || || ||||| || ||||| Sbjct 4394127 TTCAGATGACTCGGGACAAGGAGTGGACCAATTGCAAAAAGTCATTGATACCATCAAAAC 4394186 Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973 ||||| || | || |||| | || | | ||||| ||||| || | || | || Sbjct 4394187 CAACCCTGACGACAGAAGAATCACCATGTGCGCCTGGAACCCAAAAGACCTTCCTCTGAT 4394246 Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG 19033 || || ||||| | || | | || | | | || || | || || || ||||| Sbjct 4394247 GGCGCTGCCTCCCGGCCATGCCCTCTGCCTGCTCTAAGTGGTGAATGGGGAGCCGTCCTG 4394306 Query 19034 CCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATA 19093 ||| | |||||||| || || || |||||||| || | | |||||||| || | || Sbjct 4394307 CCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGCGCGCTTCAACATCGCCAGCTA 4394366 Query 19094 TGCACTTCTTACCTACAT 19111 ||| || || |||||||| Sbjct 4394367 TGCCCTGCTCACCTACAT 4394384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399450938128410