Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq19 96.9 3e-15
>seq19
Length=34640225
Score = 96.9 bits (106), Expect = 3e-15
Identities = 213/318 (67%), Gaps = 1/318 (0%)
Strand=Plus/Plus
Query 18795 CTTGGCCCCATT-TACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCA 18853
||||| |||| | || || ||||||||||| ||||| || | ||| | ||||| ||
Sbjct 4394067 CTTGGGCCCAGTGTATGGTTTCCAGTGGAGGCATTTCGGGGTGGACCACAAAGATATGCA 4394126
Query 18854 ATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913
||| | | | |||||| | || || |||||| || || ||||| || |||||
Sbjct 4394127 TTCAGATGACTCGGGACAAGGAGTGGACCAATTGCAAAAAGTCATTGATACCATCAAAAC 4394186
Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973
||||| || | || |||| | || | | ||||| ||||| || | || | ||
Sbjct 4394187 CAACCCTGACGACAGAAGAATCACCATGTGCGCCTGGAACCCAAAAGACCTTCCTCTGAT 4394246
Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG 19033
|| || ||||| | || | | || | | | || || | || || || |||||
Sbjct 4394247 GGCGCTGCCTCCCGGCCATGCCCTCTGCCTGCTCTAAGTGGTGAATGGGGAGCCGTCCTG 4394306
Query 19034 CCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATA 19093
||| | |||||||| || || || |||||||| || | | |||||||| || | ||
Sbjct 4394307 CCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGCGCGCTTCAACATCGCCAGCTA 4394366
Query 19094 TGCACTTCTTACCTACAT 19111
||| || || ||||||||
Sbjct 4394367 TGCCCTGCTCACCTACAT 4394384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399450938128410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |