Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq34 425 4e-114 seq1 163 2e-35 seq4 143 2e-29 seq5 118 8e-22 seq19 102 6e-17 >seq34 Length=25388739 Score = 425 bits (470), Expect = 4e-114 Identities = 428/554 (77%), Gaps = 2/554 (0%) Strand=Plus/Minus Query 3969 TTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATT 4028 ||||| ||||| |||||||||||||||||||||||||| | || || || || || | Sbjct 338606 TTAATCTTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTCTTCCTCCTGGACCTC 338547 Query 4029 AGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAA 4088 ||||||||||| ||| |||||| | ||||||||||||||| | ||||| |||||||| Sbjct 338546 AGAAAGAACACCTGGGTATTCTGGGAGAAGTTTGTATTTCTCCATATCAATATCTGGAAA 338487 Query 4089 AAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148 ||| ||||||| |||||| ||||| |||||||| |||||||||||||| |||| | ||| Sbjct 338486 AAATGTGTCACTTTCAAATTCTTGAATGATCCTTGTCACAAACAGTTTCAGATGTCCTGG 338427 Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 | ||| ||||| ||||| || ||||| |||| | ||||| |||||||||||||| Sbjct 338426 TTGGTCCATGGCTTCCTTATAAACCGAACTGCCTCTGACGATCCACACCATGTCTACTTT 338367 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 |||||||| || || ||||| | || | ||||| ||| | | ||| | || | ||| Sbjct 338366 ATTTGCTAGCTC-GGTTGTTCAATGAGCTGTAAAGTGTCACCCAGACTTCTGGCAAGAAA 338308 Query 4269 ATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328 |||||||| ||||| | ||||| ||||| | |||||||| |||||||||| | || Sbjct 338307 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTGTATTAATTCTGTCCTT 338248 Query 4329 TAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATT 4388 ||| || || | |||||||||||| |||||||| || || ||||||| ||||| | ||| Sbjct 338247 TAAGGGTCGATCCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATCACCAGATT 338188 Query 4389 CTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCAT 4448 ||||||| || || ||||| || || |||||||| ||||||| || || || ||| | Sbjct 338187 CTGTTTACCTTCCACTGAAGAGGTTGT-GTCATTCTCTGGAAATACTTGAACTCGTTCCT 338129 Query 4449 AAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAAC 4508 || ||||| |||| | || | |||||||||||||||||| || | || ||||| Sbjct 338128 GAGCGGGGGCCAGGGCAGTTCCCCGTTTTTGCCAATGCCCATGTTCTGGGACACGGCAAC 338069 Query 4509 AATGCAGTTTAGTG 4522 ||||| || |||| Sbjct 338068 GATGCAATTCAGTG 338055 >seq1 Length=77654946 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 ||||| || ||||| |||||||| |||| ||| ||||||||||| |||| || || | Sbjct 63989398 ATGGGGGTGACGCAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGCCGGAAAGAGAGA 63989457 Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074 || ||| ||| || | |||| || || |||||||| ||||| || || |||||| Sbjct 63989458 GGACAGTTCTGAGGCTCCCGTCGCAGAACCAGGATCTCTTGCTGGATGGGAACAGAGTTC 63989517 Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134 ||||||| ||| || ||||| ||||| || ||||| || |||| || |||||||| ||| Sbjct 63989518 ATGTGGTGGTCCACCTTCCCCTCAGCGTTGACACAGCCCAAGTGACGGCACTTTGCCTCC 63989577 Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||||||||| |||| || | || |||||||| Sbjct 63989578 CAGATCACAGAGGGGAATCTCTCAGGGTCCTCATTGCG 63989615 >seq4 Length=53591480 Score = 143 bits (158), Expect = 2e-29 Identities = 161/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 || || ||||| | || | |||| ||| | | ||| | || | ||||||||||| Sbjct 52663419 TCAGGTTGTTCAATGAGCTGTAAAATGTCACCCAGACTTCTGGCAAGAAAATGAGCTCCT 52663360 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 ||||| | ||||| ||||| | |||||||| | |||||||||| | || || || || Sbjct 52663359 TGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTGAAGGGTCGA 52663300 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||||||||| |||||||| || || ||||||| || || | |||||||||| || Sbjct 52663299 TTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATTCTGTTTACCT 52663240 Query 4399 GGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432 || ||||| || || |||||||| ||||||| Sbjct 52663239 TCCACTGAAGAGGT-GTGGTCATTCTCTGGAAAT 52663207 >seq5 Length=53451024 Score = 118 bits (130), Expect = 8e-22 Identities = 96/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||||| | ||||| ||||||||||| ||||||| |||||| |||||||| Sbjct 50215230 AAGTTTGTATTTCTCCATATCAATATCTGGAAAAAATGTGTCACTTTCAAATTCTTGCAT 50215171 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTT-CTTTATA 4169 |||||| |||||||||||||| |||| | ||| | ||| |||| ||||||| Sbjct 50215170 GATCCTTGTCACAAACAGTTTCAGATGTCCTGGTTGGTCCATGGCTTCCTTTATA 50215116 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | ||||| || || ||||||||||| Sbjct 50201269 CTTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAGGGTCGATTCTTCTCAGG 50201210 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || || ||||||| || || | |||||||||| ||| Sbjct 50201209 AATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATTCTGTTTACCTG 50201160 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| || ||||| ||||| | ||||| |||||||||||||||||||||| || || Sbjct 50212618 TTATAAACTGAACTGCCTCCGACGATCCACACCATGTCTACTTTATTTGCTAGCTCGGGT 50212559 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| | || | |||||| ||| | | ||| | || | ||||||||||| ||||| Sbjct 50212558 TGTTCAATGAGCTGTAAAGCGTCACCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGG 50212500 >seq19 Length=34640225 Score = 102 bits (112), Expect = 6e-17 Identities = 268/399 (67%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 101766 TCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAG 101825 ||||| | || | || | |||||| || ||||| || || | || | ||||| || Sbjct 4394386 TCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTC 4394327 Query 101826 CTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAAT 101884 |||| || || ||||| || ||||| ||| |||| ||| || || | | | | Sbjct 4394326 CTGACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACC-ACTTAGAGCAGGCAGAGG 4394268 Query 101885 ACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944 |||| | || |||| | |||| ||||| |||| ||||| || ||||| Sbjct 4394267 GCATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTG 4394208 Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004 || ||||| || |||||| ||||| || |||||||| | | || |||||||| ||| Sbjct 4394207 ATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACT 4394148 Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||| ||| | ||| | | |||| | || | ||||||||||||||||| Sbjct 4394147 CCTTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGG 4394088 Query 102065 AATCCATACAC-AGGTCCAAGATCTCCTTCATCTCTGTCATA-AAAACCAAGTTTATCTA 102122 || |||||||| || |||||| | ||||| | || || | || ||||| | || | Sbjct 4394087 AAACCATACACTGGGCCCAAGA-CCCCTTCTTGTCGTGCAGAGAATTCCAAG-CTGTCGA 4394030 Query 102123 AAAATGATCT--AGATCCATTCGCATCCCAAATGTGCAC 102159 |||| |||| || ||||| |||||||| || | ||| Sbjct 4394029 AAAA--ATCTTGGGACCCATTAGCATCCCAGATCTTCAC 4393993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361203218841398