Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq34 425 4e-114
seq1 163 2e-35
seq4 143 2e-29
seq5 118 8e-22
seq19 102 6e-17
>seq34
Length=25388739
Score = 425 bits (470), Expect = 4e-114
Identities = 428/554 (77%), Gaps = 2/554 (0%)
Strand=Plus/Minus
Query 3969 TTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATT 4028
||||| ||||| |||||||||||||||||||||||||| | || || || || || |
Sbjct 338606 TTAATCTTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTCTTCCTCCTGGACCTC 338547
Query 4029 AGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAA 4088
||||||||||| ||| |||||| | ||||||||||||||| | ||||| ||||||||
Sbjct 338546 AGAAAGAACACCTGGGTATTCTGGGAGAAGTTTGTATTTCTCCATATCAATATCTGGAAA 338487
Query 4089 AAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148
||| ||||||| |||||| ||||| |||||||| |||||||||||||| |||| | |||
Sbjct 338486 AAATGTGTCACTTTCAAATTCTTGAATGATCCTTGTCACAAACAGTTTCAGATGTCCTGG 338427
Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208
| ||| ||||| ||||| || ||||| |||| | ||||| ||||||||||||||
Sbjct 338426 TTGGTCCATGGCTTCCTTATAAACCGAACTGCCTCTGACGATCCACACCATGTCTACTTT 338367
Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268
|||||||| || || ||||| | || | ||||| ||| | | ||| | || | |||
Sbjct 338366 ATTTGCTAGCTC-GGTTGTTCAATGAGCTGTAAAGTGTCACCCAGACTTCTGGCAAGAAA 338308
Query 4269 ATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328
|||||||| ||||| | ||||| ||||| | |||||||| |||||||||| | ||
Sbjct 338307 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTGTATTAATTCTGTCCTT 338248
Query 4329 TAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATT 4388
||| || || | |||||||||||| |||||||| || || ||||||| ||||| | |||
Sbjct 338247 TAAGGGTCGATCCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATCACCAGATT 338188
Query 4389 CTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCAT 4448
||||||| || || ||||| || || |||||||| ||||||| || || || ||| |
Sbjct 338187 CTGTTTACCTTCCACTGAAGAGGTTGT-GTCATTCTCTGGAAATACTTGAACTCGTTCCT 338129
Query 4449 AAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAAC 4508
|| ||||| |||| | || | |||||||||||||||||| || | || |||||
Sbjct 338128 GAGCGGGGGCCAGGGCAGTTCCCCGTTTTTGCCAATGCCCATGTTCTGGGACACGGCAAC 338069
Query 4509 AATGCAGTTTAGTG 4522
||||| || ||||
Sbjct 338068 GATGCAATTCAGTG 338055
>seq1
Length=77654946
Score = 163 bits (180), Expect = 2e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014
||||| || ||||| |||||||| |||| ||| ||||||||||| |||| || || |
Sbjct 63989398 ATGGGGGTGACGCAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGCCGGAAAGAGAGA 63989457
Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074
|| ||| ||| || | |||| || || |||||||| ||||| || || ||||||
Sbjct 63989458 GGACAGTTCTGAGGCTCCCGTCGCAGAACCAGGATCTCTTGCTGGATGGGAACAGAGTTC 63989517
Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134
||||||| ||| || ||||| ||||| || ||||| || |||| || |||||||| |||
Sbjct 63989518 ATGTGGTGGTCCACCTTCCCCTCAGCGTTGACACAGCCCAAGTGACGGCACTTTGCCTCC 63989577
Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172
|| ||||||||||| |||| || | || ||||||||
Sbjct 63989578 CAGATCACAGAGGGGAATCTCTCAGGGTCCTCATTGCG 63989615
>seq4
Length=53591480
Score = 143 bits (158), Expect = 2e-29
Identities = 161/214 (75%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278
|| || ||||| | || | |||| ||| | | ||| | || | |||||||||||
Sbjct 52663419 TCAGGTTGTTCAATGAGCTGTAAAATGTCACCCAGACTTCTGGCAAGAAAATGAGCTCCT 52663360
Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338
||||| | ||||| ||||| | |||||||| | |||||||||| | || || || ||
Sbjct 52663359 TGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTGAAGGGTCGA 52663300
Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
|||||||||||||| |||||||| || || ||||||| || || | |||||||||| ||
Sbjct 52663299 TTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATTCTGTTTACCT 52663240
Query 4399 GGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432
|| ||||| || || |||||||| |||||||
Sbjct 52663239 TCCACTGAAGAGGT-GTGGTCATTCTCTGGAAAT 52663207
>seq5
Length=53451024
Score = 118 bits (130), Expect = 8e-22
Identities = 96/115 (83%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
||||||||||||||| | ||||| ||||||||||| ||||||| |||||| ||||||||
Sbjct 50215230 AAGTTTGTATTTCTCCATATCAATATCTGGAAAAAATGTGTCACTTTCAAATTCTTGCAT 50215171
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTT-CTTTATA 4169
|||||| |||||||||||||| |||| | ||| | ||| |||| |||||||
Sbjct 50215170 GATCCTTGTCACAAACAGTTTCAGATGTCCTGGTTGGTCCATGGCTTCCTTTATA 50215116
Score = 100 bits (110), Expect = 2e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || | |||||||| | |||||||||| | ||||| || || |||||||||||
Sbjct 50201269 CTTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAGGGTCGATTCTTCTCAGG 50201210
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| || || ||||||| || || | |||||||||| |||
Sbjct 50201209 AATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATTCTGTTTACCTG 50201160
Score = 93.3 bits (102), Expect = 3e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| || ||||| ||||| | ||||| |||||||||||||||||||||| || ||
Sbjct 50212618 TTATAAACTGAACTGCCTCCGACGATCCACACCATGTCTACTTTATTTGCTAGCTCGGGT 50212559
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283
||||| | || | |||||| ||| | | ||| | || | ||||||||||| |||||
Sbjct 50212558 TGTTCAATGAGCTGTAAAGCGTCACCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGG 50212500
>seq19
Length=34640225
Score = 102 bits (112), Expect = 6e-17
Identities = 268/399 (67%), Gaps = 10/399 (3%)
Strand=Plus/Minus
Query 101766 TCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAG 101825
||||| | || | || | |||||| || ||||| || || | || | ||||| ||
Sbjct 4394386 TCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTC 4394327
Query 101826 CTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAAT 101884
|||| || || ||||| || ||||| ||| |||| ||| || || | | | |
Sbjct 4394326 CTGACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACC-ACTTAGAGCAGGCAGAGG 4394268
Query 101885 ACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944
|||| | || |||| | |||| ||||| |||| ||||| || |||||
Sbjct 4394267 GCATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTG 4394208
Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004
|| ||||| || |||||| ||||| || |||||||| | | || |||||||| |||
Sbjct 4394207 ATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACT 4394148
Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064
|||| ||| | ||| | | |||| | || | |||||||||||||||||
Sbjct 4394147 CCTTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGG 4394088
Query 102065 AATCCATACAC-AGGTCCAAGATCTCCTTCATCTCTGTCATA-AAAACCAAGTTTATCTA 102122
|| |||||||| || |||||| | ||||| | || || | || ||||| | || |
Sbjct 4394087 AAACCATACACTGGGCCCAAGA-CCCCTTCTTGTCGTGCAGAGAATTCCAAG-CTGTCGA 4394030
Query 102123 AAAATGATCT--AGATCCATTCGCATCCCAAATGTGCAC 102159
|||| |||| || ||||| |||||||| || | |||
Sbjct 4394029 AAAA--ATCTTGGGACCCATTAGCATCCCAGATCTTCAC 4393993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361203218841398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |