Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq57 248 1e-60
seq6 192 7e-44
seq3 131 2e-25
seq175 122 1e-22
seq83 105 8e-18
seq56 105 8e-18
seq63 93.3 5e-14
seq171 89.7 6e-13
seq81 86.0 7e-12
>seq57
Length=15126812
Score = 248 bits (274), Expect = 1e-60
Identities = 604/904 (67%), Gaps = 36/904 (4%)
Strand=Plus/Minus
Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888
||||| |||||||| | |||| ||||| || | || || | || ||||| || |||
Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261
Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948
|||| ||| ||| | |||||||| || |||| || || | | || | |||||
Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201
Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCA--- 24005
|||| ||| || | || ||||| ||||| || || | | | | ||||| |
Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144
Query 24006 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 24065
||||||||||| || | || || || | ||| | || || || || | ||| || |
Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084
Query 24066 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC----GGTGGATACAATAAATG 24121
|| || | | | ||| || | || || |||| ||| || | | ||
Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028
Query 24122 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 24181
|| |||| || || | ||||| || |||| |||||| |||| |||||| | || |
Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969
Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241
|||||| ||||| || ||||| || || | || || ||||||||||| || ||||| ||
Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909
Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301
||||||||| ||| ||| | || ||||| || | || ||||||||| ||
Sbjct 10749908 ACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852
Query 24302 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 24354
|| | ||||||| | | | || || |||||| || | ||||||||
Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799
Query 24355 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 24414
| | || || ||||| ||||| ||| |||| || |||||| || | ||||
Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739
Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474
| | ||||| ||||| | ||||| ||||| || ||||| ||||| || || |||||||
Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679
Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534
| | || || ||||| || |||||| | |||||| || | | |||||||| ||||
Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619
Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGG 24592
| || |||||||| ||||| || |||| || | |||||| || |||||| || ||
Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559
Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652
| || | ||| | | | || || || | ||| || | || ||||||| ||
Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499
Query 24653 TGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711
|| ||| ||| |||| || ||||| | |||||| ||||| ||||| || ||||| ||||
Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440
Query 24712 CAAA 24715
||||
Sbjct 10749439 CAAA 10749436
>seq6
Length=52350410
Score = 192 bits (212), Expect = 7e-44
Identities = 313/448 (70%), Gaps = 6/448 (1%)
Strand=Plus/Minus
Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176
|| || || ||||||| || || ||||| |||||||||||||| ||| |||||| |
Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109
Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236
|| |||||||| ||||| || ||||| || || | || | ||||| ||| | | |||
Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049
Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296
|| || |||||||||| |||||||| || || |||| || | | ||||||||
Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989
Query 24297 C-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353
|| | || ||| ||||| |||| || |||| ||| ||| | ||
Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932
Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413
|| || || || ||||| | || | | |||| || |||||||| | | || |||
Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872
Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473
| | ||||| ||||| || ||| | |||||||||||||| |||| || || ||||
Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812
Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533
|| | ||| || ||||| || |||||| | ||||| || || || ||||||||||||
Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752
Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCA 24561
| | |||||||| |||||||| ||||
Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724
>seq3
Length=68754498
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| |
Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||| |||| || ||||||||||| ||||||||||| || || | | ||||
Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124
Query 53270 CTATTTCTAAGACCGTA 53286
|||||||| | ||| ||
Sbjct 19114125 CTATTTCTGATACCATA 19114141
Score = 86.0 bits (94), Expect = 7e-12
Identities = 113/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| |||||||| || || | || ||||| | || |
Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267
Query 54085 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143
||||| || || ||||| ||||| |||||| || || ||| | | || || | ||||
Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326
Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177
| || |||| ||| || | | ||||||||||
Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360
>seq175
Length=2612143
Score = 122 bits (134), Expect = 1e-22
Identities = 263/393 (67%), Gaps = 4/393 (1%)
Strand=Plus/Minus
Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383
|||||||| || || || || ||| | ||| ||| || || | ||||| | | | | |
Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290
Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443
| | || |||| | | || | ||| |||| | || || || || || |||
Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230
Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503
|| || ||| || | ||| || |||||||| |||||| | || || || ||
Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174
Query 24504 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 24563
| || || ||| | ||||||||||| || ||| | || |||| ||||||||| || ||
Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114
Query 24564 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 24623
| || ||||||| || | |||||| | || ||||| | | || ||| ||
Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054
Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683
|||| || | || || ||||||| || |||| || || | |||||||| |||||
Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994
Query 24684 ATGTCATGATATTGAATTGGAAAAATAACAAAT 24716
|| ||| | || || ||||||||||| ||||||
Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961
>seq83
Length=10591344
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||| |||||| | || |||||||| ||||| || ||||| || || || || |
Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277
Query 24277 C 24277
|
Sbjct 7356278 C 7356278
>seq56
Length=15139244
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | || ||||||||||||||||||||||| || || | ||| |
Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||||| ||||| || || || ||||| | ||||| || || |||||||
Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161
Query 24277 CAATAAGTCTTTCTCC 24292
| | | |||||| ||
Sbjct 9265160 CCACCACTCTTTCCCC 9265145
>seq63
Length=13740492
Score = 93.3 bits (102), Expect = 5e-14
Identities = 208/309 (67%), Gaps = 9/309 (3%)
Strand=Plus/Minus
Query 21932 TGTACTTCTTTCAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 21989
|| ||||||| | ||||||||| | | | |||| | | || ||||| || || | ||
Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954
Query 21990 CCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTC 22049
| ||| ||||| | ||| | | ||| ||| ||||| | | | || | |||||
Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894
Query 22050 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 22106
| ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || |
Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834
Query 22107 CAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCT 22166
|||| | ||||||| ||| |||||||| ||| | | || ||| | || |
Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCATCCAGGAGGAACAGCTATCTGAATGCCGGTTT 12331774
Query 22167 TAATTAATTGTCTTTCTCCT--GGAGGGATAGTATAATCATAAGCGCTATATAAATCATA 22224
| | | | ||||||||| || || | ||||| ||||| || || || || || ||
Sbjct 12331773 TCA--CAATACCTTTCTCCTTGGGTGGCACCGTATAGTCATAGGCACTGTACAAGTCGTA 12331716
Query 22225 TCCGGCGGC 22233
||||||||
Sbjct 12331715 GCCGGCGGC 12331707
>seq171
Length=3042471
Score = 89.7 bits (98), Expect = 6e-13
Identities = 145/207 (70%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990
||| ||||||| | |||||||||| | || |||| | | || ||||| || || | |||
Sbjct 1173475 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATC 1173534
Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050
||| ||||| | ||| | | ||| ||| ||||| | | || || | ||||||
Sbjct 1173535 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCC 1173594
Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107
||||||||||| ||||| ||||| |||||| | | || | ||||| | || ||
Sbjct 1173595 TCTATAATCTTCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACAGCCAAGCC 1173654
Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134
||| | ||| ||| ||| ||| ||||
Sbjct 1173655 AGAGCGTGGAACTACTCTTCCA-AGCA 1173680
>seq81
Length=11848649
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 21931 TTGTACTTCTTTCAGTTCTGGAT--AATATATACGTTGATAGATTAGCTGAGCTATTCTA 21988
||| ||||||| |||||||| || | || |||| | | || ||||| || || | |
Sbjct 872441 TTGAACTTCTTCTGTTTCTGGATTTAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGA 872382
Query 21989 TCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTT 22048
|| ||| ||||| | | | | | ||| ||| ||||| || | | || | ||||
Sbjct 872381 TCGCCCTGTTTTACTTCAGACTTCTCTTTCCCAAAATTAAACAGTACACCACCAACATTT 872322
Query 22049 CCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGA 22105
|| ||||||||||| ||||| ||||| |||||| |||||| | ||||| | ||
Sbjct 872321 CCTCTATAATCTTCATCTATAACACCCGCTCCTACATCAATGAAGTGTTTTACAGCCAAG 872262
Query 22106 CCAGACCTAGGAGCTATTCTACCATAGCA 22134
||||| | ||||||| ||| ||| ||||
Sbjct 872261 CCAGAGCGTGGAGCTACTCTTCCA-AGCA 872234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593640720275040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |