Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq57 248 1e-60 seq6 192 7e-44 seq3 131 2e-25 seq175 122 1e-22 seq83 105 8e-18 seq56 105 8e-18 seq63 93.3 5e-14 seq171 89.7 6e-13 seq81 86.0 7e-12 >seq57 Length=15126812 Score = 248 bits (274), Expect = 1e-60 Identities = 604/904 (67%), Gaps = 36/904 (4%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| |||||||| | |||| ||||| || | || || | || ||||| || ||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 |||| ||| ||| | |||||||| || |||| || || | | || | ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCA--- 24005 |||| ||| || | || ||||| ||||| || || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 24006 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 24065 ||||||||||| || | || || || | ||| | || || || || | ||| || | Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 24066 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC----GGTGGATACAATAAATG 24121 || || | | | ||| || | || || |||| ||| || | | || Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028 Query 24122 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 24181 || |||| || || | ||||| || |||| |||||| |||| |||||| | || | Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969 Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241 |||||| ||||| || ||||| || || | || || ||||||||||| || ||||| || Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 ||||||||| ||| ||| | || ||||| || | || ||||||||| || Sbjct 10749908 ACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 24354 || | ||||||| | | | || || |||||| || | |||||||| Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799 Query 24355 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 24414 | | || || ||||| ||||| ||| |||| || |||||| || | |||| Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739 Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 | | ||||| ||||| | ||||| ||||| || ||||| ||||| || || ||||||| Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 | | || || ||||| || |||||| | |||||| || | | |||||||| |||| Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGG 24592 | || |||||||| ||||| || |||| || | |||||| || |||||| || || Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559 Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 | || | ||| | | | || || || | ||| || | || ||||||| || Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499 Query 24653 TGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 || ||| ||| |||| || ||||| | |||||| ||||| ||||| || ||||| |||| Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 24712 CAAA 24715 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 192 bits (212), Expect = 7e-44 Identities = 313/448 (70%), Gaps = 6/448 (1%) Strand=Plus/Minus Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176 || || || ||||||| || || ||||| |||||||||||||| ||| |||||| | Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109 Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || |||||||| ||||| || ||||| || || | || | ||||| ||| | | ||| Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || || |||||||||| |||||||| || || |||| || | | |||||||| Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989 Query 24297 C-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 || | || ||| ||||| |||| || |||| ||| ||| | || Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 || || || || ||||| | || | | |||| || |||||||| | | || ||| Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 | | ||||| ||||| || ||| | |||||||||||||| |||| || || |||| Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 || | ||| || ||||| || |||||| | ||||| || || || |||||||||||| Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCA 24561 | | |||||||| |||||||| |||| Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq3 Length=68754498 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || ||||||||||| ||||||||||| || || | | |||| Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 53270 CTATTTCTAAGACCGTA 53286 |||||||| | ||| || Sbjct 19114125 CTATTTCTGATACCATA 19114141 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||| || || | || ||||| | || | Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267 Query 54085 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 ||||| || || ||||| ||||| |||||| || || ||| | | || || | |||| Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 | || |||| ||| || | | |||||||||| Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360 >seq175 Length=2612143 Score = 122 bits (134), Expect = 1e-22 Identities = 263/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383 |||||||| || || || || ||| | ||| ||| || || | ||||| | | | | | Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290 Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 | | || |||| | | || | ||| |||| | || || || || || ||| Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503 || || ||| || | ||| || |||||||| |||||| | || || || || Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174 Query 24504 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 24563 | || || ||| | ||||||||||| || ||| | || |||| ||||||||| || || Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114 Query 24564 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 24623 | || ||||||| || | |||||| | || ||||| | | || ||| || Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054 Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683 |||| || | || || ||||||| || |||| || || | |||||||| ||||| Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994 Query 24684 ATGTCATGATATTGAATTGGAAAAATAACAAAT 24716 || ||| | || || ||||||||||| |||||| Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq83 Length=10591344 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| |||||| | || |||||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 24277 C 24277 | Sbjct 7356278 C 7356278 >seq56 Length=15139244 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | || ||||||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||||| ||||| || || || ||||| | ||||| || || ||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 24277 CAATAAGTCTTTCTCC 24292 | | | |||||| || Sbjct 9265160 CCACCACTCTTTCCCC 9265145 >seq63 Length=13740492 Score = 93.3 bits (102), Expect = 5e-14 Identities = 208/309 (67%), Gaps = 9/309 (3%) Strand=Plus/Minus Query 21932 TGTACTTCTTTCAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 21989 || ||||||| | ||||||||| | | | |||| | | || ||||| || || | || Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954 Query 21990 CCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTC 22049 | ||| ||||| | ||| | | ||| ||| ||||| | | | || | ||||| Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894 Query 22050 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 22106 | ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || | Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834 Query 22107 CAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCT 22166 |||| | ||||||| ||| |||||||| ||| | | || ||| | || | Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCATCCAGGAGGAACAGCTATCTGAATGCCGGTTT 12331774 Query 22167 TAATTAATTGTCTTTCTCCT--GGAGGGATAGTATAATCATAAGCGCTATATAAATCATA 22224 | | | | ||||||||| || || | ||||| ||||| || || || || || || Sbjct 12331773 TCA--CAATACCTTTCTCCTTGGGTGGCACCGTATAGTCATAGGCACTGTACAAGTCGTA 12331716 Query 22225 TCCGGCGGC 22233 |||||||| Sbjct 12331715 GCCGGCGGC 12331707 >seq171 Length=3042471 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | |||||||||| | || |||| | | || ||||| || || | ||| Sbjct 1173475 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATC 1173534 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 ||| ||||| | ||| | | ||| ||| ||||| | | || || | |||||| Sbjct 1173535 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCC 1173594 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107 ||||||||||| ||||| ||||| |||||| | | || | ||||| | || || Sbjct 1173595 TCTATAATCTTCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACAGCCAAGCC 1173654 Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134 ||| | ||| ||| ||| ||| |||| Sbjct 1173655 AGAGCGTGGAACTACTCTTCCA-AGCA 1173680 >seq81 Length=11848649 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 21931 TTGTACTTCTTTCAGTTCTGGAT--AATATATACGTTGATAGATTAGCTGAGCTATTCTA 21988 ||| ||||||| |||||||| || | || |||| | | || ||||| || || | | Sbjct 872441 TTGAACTTCTTCTGTTTCTGGATTTAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGA 872382 Query 21989 TCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTT 22048 || ||| ||||| | | | | | ||| ||| ||||| || | | || | |||| Sbjct 872381 TCGCCCTGTTTTACTTCAGACTTCTCTTTCCCAAAATTAAACAGTACACCACCAACATTT 872322 Query 22049 CCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGA 22105 || ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || Sbjct 872321 CCTCTATAATCTTCATCTATAACACCCGCTCCTACATCAATGAAGTGTTTTACAGCCAAG 872262 Query 22106 CCAGACCTAGGAGCTATTCTACCATAGCA 22134 ||||| | ||||||| ||| ||| |||| Sbjct 872261 CCAGAGCGTGGAGCTACTCTTCCA-AGCA 872234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593640720275040