Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq70 255 7e-63
seq38 134 2e-26
>seq70
Length=13219966
Score = 255 bits (282), Expect = 7e-63
Identities = 264/346 (76%), Gaps = 0/346 (0%)
Strand=Plus/Plus
Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108
|| ||| |||| | | || |||||||| || | | | |||| | ||||| ||||||
Sbjct 852017 GCTGGGCCAGCAAGACTTCTATGTCGGGTTCGATGTTGATGGTCGGAAAGCGGCGGCTGT 852076
Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168
|||||||||| || ||||||| ||||||| ||||||||| ||||||||||| | ||
Sbjct 852077 ACCTGCGCACCGGGACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGATGT 852136
Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228
|||| ||||||||||||||||| |||| || ||||||| ||| ||||| | |
Sbjct 852137 CGTTCCGGCACACTGGAGACCAAATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGGCT 852196
Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288
||||||| ||||| ||||||||||| || ||||||| ||||||||| || ||| | | |
Sbjct 852197 CGTCGCTGGGCGCTGGCAGGGCCTCCCGCAGGAAGGTGAAGAGCGGGTGAGCCTTCTCCC 852256
Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348
| |||||||| ||||| |||||||| | ||||| |||||||| || |||||| ||||
Sbjct 852257 CATTGACCTCACACTTTTCGAAGAGTGTGAAGTTGGGCTCGAACCCACCCCCAGGTCGGA 852316
Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|| ||| |||||| | ||||| | |||| ||| || |||||
Sbjct 852317 TGTACTTGAGGGAATTGAGAATCTCTTCGTTCTTGGCATTCTCCTG 852362
Score = 168 bits (186), Expect = 8e-37
Identities = 162/208 (78%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || ||||||||||| ||||| || || ||||| |||||||| || | ||| ||||
Sbjct 852610 CCTGATGTCCGAACTGGTTGCACGGAAAGCCGAGCACGACCAGCCCTCGGGGTCCGAGGC 852669
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
||| |||||| |||||||||| ||||| ||||| ||| | ||||||||||| || |
Sbjct 852670 GCCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGAGTGGTGGTGCCTCAGAGGGAAGCCA 852729
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||||||||||| ||| |||||| | |||| | ||||| || || || ||||
Sbjct 852730 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGCTCATGGGCTCCCCGCCGG 852789
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| | | |||| || ||||||| ||| ||
Sbjct 852790 TCAGCAGGCGCGCAGAGAAGGAGTAGAC 852817
>seq38
Length=21146472
Score = 134 bits (148), Expect = 2e-26
Identities = 175/237 (74%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 50440 GTCTATCTACAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGC 50499
||| ||| ||||||||| ||| |||| ||| || | || || |||||||| ||
Sbjct 11566890 GTCCATCGGCAACTTCGCGTCGCGCCTGCTGGTGCACCTCTTCCCCGAGCTCTTCACGCA 11566831
Query 50500 GGAGAACCTGCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACC 50558
|||||||||| || ||| | ||||||| |||||| |||||||| |||| || ||||
Sbjct 11566830 CGAGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCGCTGGGCAAGAAGCAG-CTGGACC 11566772
Query 50559 CGCTACGCCTGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCG-GCGGCGCGCAAC 50617
|| ||| | ||| | |||| ||||| |||||| |||| ||||| ||| | | |||
Sbjct 11566771 CGGCGCGCATCCGCCTCATCCGCCACTACGTGCAGCTGCTCTACCCGCGCGCCAAG-AAC 11566713
Query 50618 GAGCGCGTGTGGATCACAAAGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCGC 50674
|| |||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 11566712 GACCGCGTGTGGACGCTCGAGTTCGTGGGCAAGCTGGACGAGCGCTGCCGGCGCCGC 11566656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608713866655920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |