Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq70 255 7e-63 seq38 134 2e-26 >seq70 Length=13219966 Score = 255 bits (282), Expect = 7e-63 Identities = 264/346 (76%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| |||| | | || |||||||| || | | | |||| | ||||| |||||| Sbjct 852017 GCTGGGCCAGCAAGACTTCTATGTCGGGTTCGATGTTGATGGTCGGAAAGCGGCGGCTGT 852076 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||||| ||||||| ||||||||| ||||||||||| | || Sbjct 852077 ACCTGCGCACCGGGACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGATGT 852136 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 |||| ||||||||||||||||| |||| || ||||||| ||| ||||| | | Sbjct 852137 CGTTCCGGCACACTGGAGACCAAATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGGCT 852196 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 ||||||| ||||| ||||||||||| || ||||||| ||||||||| || ||| | | | Sbjct 852197 CGTCGCTGGGCGCTGGCAGGGCCTCCCGCAGGAAGGTGAAGAGCGGGTGAGCCTTCTCCC 852256 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | |||||||| ||||| |||||||| | ||||| |||||||| || |||||| |||| Sbjct 852257 CATTGACCTCACACTTTTCGAAGAGTGTGAAGTTGGGCTCGAACCCACCCCCAGGTCGGA 852316 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| |||||| | ||||| | |||| ||| || ||||| Sbjct 852317 TGTACTTGAGGGAATTGAGAATCTCTTCGTTCTTGGCATTCTCCTG 852362 Score = 168 bits (186), Expect = 8e-37 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| ||||| || || ||||| |||||||| || | ||| |||| Sbjct 852610 CCTGATGTCCGAACTGGTTGCACGGAAAGCCGAGCACGACCAGCCCTCGGGGTCCGAGGC 852669 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| |||||| |||||||||| ||||| ||||| ||| | ||||||||||| || | Sbjct 852670 GCCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGAGTGGTGGTGCCTCAGAGGGAAGCCA 852729 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | |||| | ||||| || || || |||| Sbjct 852730 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGCTCATGGGCTCCCCGCCGG 852789 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | | |||| || ||||||| ||| || Sbjct 852790 TCAGCAGGCGCGCAGAGAAGGAGTAGAC 852817 >seq38 Length=21146472 Score = 134 bits (148), Expect = 2e-26 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 50440 GTCTATCTACAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGC 50499 ||| ||| ||||||||| ||| |||| ||| || | || || |||||||| || Sbjct 11566890 GTCCATCGGCAACTTCGCGTCGCGCCTGCTGGTGCACCTCTTCCCCGAGCTCTTCACGCA 11566831 Query 50500 GGAGAACCTGCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACC 50558 |||||||||| || ||| | ||||||| |||||| |||||||| |||| || |||| Sbjct 11566830 CGAGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCGCTGGGCAAGAAGCAG-CTGGACC 11566772 Query 50559 CGCTACGCCTGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCG-GCGGCGCGCAAC 50617 || ||| | ||| | |||| ||||| |||||| |||| ||||| ||| | | ||| Sbjct 11566771 CGGCGCGCATCCGCCTCATCCGCCACTACGTGCAGCTGCTCTACCCGCGCGCCAAG-AAC 11566713 Query 50618 GAGCGCGTGTGGATCACAAAGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCGC 50674 || |||||||||| ||||| ||| |||||||||||||||||||||||| Sbjct 11566712 GACCGCGTGTGGACGCTCGAGTTCGTGGGCAAGCTGGACGAGCGCTGCCGGCGCCGC 11566656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608713866655920