Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq116 140 3e-28 seq3 105 6e-18 seq73 89.7 4e-13 seq45 82.4 6e-11 >seq116 Length=7179089 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||||| |||| ||||||||||| || ||||| ||||| | | Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| ||||||| || || | ||| || |||| ||||||| Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||| |||||||||||||| | || || ||||| || ||||| || Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593 >seq3 Length=68754498 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||||| |||| |||||||| || || ||||| || || | Sbjct 7045131 CCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAG 7045190 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||| || || || | ||||||||| || Sbjct 7045191 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGA 7045250 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||| || Sbjct 7045251 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACC 7045310 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || | || || ||| | |||||||||||| Sbjct 7045311 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTG 7045361 >seq73 Length=12918409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| |||| |||||||| || || |||| || || | || || || | ||||| Sbjct 707546 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGAGAGAGTGCGGCCATCCTC 707488 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 | |||||||||| || | || || | ||||||||| || | |||||||||||| Sbjct 707487 CCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTG 707428 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | ||| || |||| ||| || | | ||| ||||| || Sbjct 707427 GATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATGGTTTT 707368 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||| || | || || ||||| |||||||||||| Sbjct 707367 GCCCGTCAGGGTCTTCACAAAGATTTGCATTTTG 707334 >seq45 Length=18186770 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||||| | ||||| || || | || || || | || Sbjct 11996465 AGGACCAGGTGCAGGGTGGACTCCT---GGATGTTGTAATCAGAAAGAGTGTGACCATCT 11996521 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||| |||||||| | | || | ||||||||| | | ||||||||| | Sbjct 11996522 TCTGGCTGCCTGCCCGCAAAGAGGAGACGCTGCTGGTCTGGGATGATGCCTTCCTTATTC 11996581 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| | | |||| || | | |||||||| |||| || |||||| Sbjct 11996582 TGGATCTTGGCCTTCGCGTAACCGATGGTGGCGCTGGGCTCCGCCTCCAGAGTGATGGTC 11996641 Query 21144 TTGCCGGTTAACG-TTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || |||| || || | ||||||||||| Sbjct 11996642 TTGCCGGTCAGCGTTTTTCACGAAGACTTGCATTTTGA 11996679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422203115796968