Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq116 140 3e-28
seq3 105 6e-18
seq73 89.7 4e-13
seq45 82.4 6e-11
>seq116
Length=7179089
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || | |||||||| |||| ||||||||||| || ||||| ||||| | |
Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| || | || |||||||| ||||| ||| | || || ||||||||||| |||
Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || ||||| ||||||| || || | ||| || |||| |||||||
Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|||| ||| |||||||||||||| | || || ||||| || ||||| ||
Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593
>seq3
Length=68754498
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | | ||||| |||| |||||||| || || ||||| || || |
Sbjct 7045131 CCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAG 7045190
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||||||||| || || || | ||||||||| ||
Sbjct 7045191 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGA 7045250
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| || || | ||| || |||| ||| ||
Sbjct 7045251 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACC 7045310
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| ||||||||||| || | || || ||| | ||||||||||||
Sbjct 7045311 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTG 7045361
>seq73
Length=12918409
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/214 (70%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025
||||| |||| |||||||| || || |||| || || | || || || | |||||
Sbjct 707546 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGAGAGAGTGCGGCCATCCTC 707488
Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085
| |||||||||| || | || || | ||||||||| || | ||||||||||||
Sbjct 707487 CCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTG 707428
Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145
|||||| || || | ||| || |||| ||| || | | ||| ||||| ||
Sbjct 707427 GATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATGGTTTT 707368
Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
||| || | || || ||||| ||||||||||||
Sbjct 707367 GCCCGTCAGGGTCTTCACAAAGATTTGCATTTTG 707334
>seq45
Length=18186770
Score = 82.4 bits (90), Expect = 6e-11
Identities = 150/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| |||||||||| | ||||| || || | || || || | ||
Sbjct 11996465 AGGACCAGGTGCAGGGTGGACTCCT---GGATGTTGTAATCAGAAAGAGTGTGACCATCT 11996521
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| |||| |||||||| | | || | ||||||||| | | ||||||||| |
Sbjct 11996522 TCTGGCTGCCTGCCCGCAAAGAGGAGACGCTGCTGGTCTGGGATGATGCCTTCCTTATTC 11996581
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||| | | |||| || | | |||||||| |||| || ||||||
Sbjct 11996582 TGGATCTTGGCCTTCGCGTAACCGATGGTGGCGCTGGGCTCCGCCTCCAGAGTGATGGTC 11996641
Query 21144 TTGCCGGTTAACG-TTTTGACAAATATTTGCATTTTGA 21180
|||||||| | || |||| || || | |||||||||||
Sbjct 11996642 TTGCCGGTCAGCGTTTTTCACGAAGACTTGCATTTTGA 11996679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422203115796968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |