Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq116 145 8e-30 seq3 141 1e-28 seq73 138 1e-27 seq42 107 2e-18 seq57 104 2e-17 seq1 98.7 1e-15 seq37 93.3 4e-14 seq56 91.5 2e-13 seq83 84.2 2e-11 seq45 84.2 2e-11 >seq116 Length=7179089 Score = 145 bits (160), Expect = 8e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 4848593 AAGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 4848534 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| ||| || | |||||||||||||||||| | || Sbjct 4848533 AGTGACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGA 4848475 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||| | ||||| Sbjct 4848474 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTA 4848415 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||| |||| ||||| || ||| Sbjct 4848414 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 4848381 >seq3 Length=68754498 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| | || || || || |||||||| ||||||||| | || || ||| || Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || ||||| || | ||| Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || ||| |||||||||||||| || | ||||| ||| || ||| Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| ||||| || ||| ||||| || | || ||| Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGGC 7045130 >seq73 Length=12918409 Score = 138 bits (152), Expect = 1e-27 Identities = 170/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || || || || |||||||||||||||||| | | || ||| || Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | ||||| || ||||| || | ||| Sbjct 707395 AGTGACACCATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGCATTCCTCCAGAC 707454 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | ||| |||||||||| ||| || | ||||| ||| || ||| Sbjct 707455 CAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGATGGCCGCACTCTCTCTGATTAC 707514 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| ||| |||| ||||| || ||||||||| || | || ||| Sbjct 707515 -ACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGTGCGGTGGC 707564 >seq42 Length=18862759 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || || || || || | | |||||||| | || || ||| || Sbjct 11622211 AAAATGCAAATCTTTGTGAAGACCCTGACAAGTGAGACCATCACACTAGAAGTTGAACCC 11622152 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | || |||||| || || | ||||| || |||||||| | ||| Sbjct 11622151 AGTGACACCAACATAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 11622092 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | ||| |||| || |||||| || | ||||| ||| || ||| Sbjct 11622091 CAGCAGCGGCTGATATTCGCTGGCACACGGCTGGAGGATGGCCGCACTCTCTCTGAATAC 11622032 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||||| ||| | | ||| | || ||||||||| || Sbjct 11622031 AACATCCAGAAAGAGTCTCCCCTGTACCTGGTGTTGCGCCTG 11621990 >seq57 Length=15126812 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||||||| | |||||||| || ||||||| ||| ||||| |||||||| Sbjct 1409698 GACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAA 1409757 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||| ||| |||| ||||| || || | Sbjct 1409758 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTC 1409817 Query 40903 CGCTTGAGGGGCGGC 40917 || | ||||| ||| Sbjct 1409818 CGTCTTAGGGGTGGC 1409832 >seq1 Length=77654946 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || || || || | |||||| |||||||| | || || ||| | Sbjct 73228319 AAAATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTAGAGGTTGAACCT 73228378 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || ||||| || | ||| Sbjct 73228379 AGTGACACCATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 73228438 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || ||| |||||| ||| ||| || | |||| | || ||| Sbjct 73228439 CAGCAGCGGCTGATACTCGCTGGCAAATAGCGGGAGGATGGCTGCACTCAGTCTGATTAC 73228498 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 | |||||||| ||| |||| ||||| || ||| ||||| || Sbjct 73228499 AGCATCCAGAGAGAGCCCACCCTGCACCTGGTGGTGCGCCTG 73228540 >seq37 Length=22002326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| | || || || | || ||||| | ||||||| | || | ||| || Sbjct 20562834 AAAATGCAAATCTCTGTGAAGACCCAGACAGGCAAGAACATCACCCTAGAGGGTGAACCC 20562893 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | || | | |||| || | | ||||| || |||||||| | ||| Sbjct 20562894 AATGACACCATCCAGAATATAAAGGCTAAGAACCCAGACAAGGAAGGCATCCCACCAGAC 20562953 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || || | | | || ||||||||| | || | |||| ||| |||||| Sbjct 20562954 CAGCAGTGGCTGATATTCCCTGGTAAACAGCTGAAGGATGGCTGCACGCTCTCTGACTAC 20563013 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||| ||| || ||||| || | |||| || || | || ||| Sbjct 20563014 AACTTCCAGAAAGAGTGCAGCCTGCACCTGGCGTTGGGCCTGCGTGGTGGC 20563064 >seq56 Length=15139244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGTTTCGCCGCCATATTT 117100 |||||||||| || || || || || |||||||| || ||| |||| || |||||||| Sbjct 9265155 TGGTGGCCTTTGCTGCTGTGGAAGGGGTCTTCTTCTCAGGGTCGTTT-GCTGCCATATTC 9265213 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||| ||||| | || ||||||||||| || || || ||| ||||||||| ||| Sbjct 9265214 TGGCTAAAGAAGAGAGGGCTCATGCCCGGACTCACGTTTTCCAATGAGCTCATCAGCAGA 9265273 Query 117161 GACGAGG 117167 || |||| Sbjct 9265274 GATGAGG 9265280 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || ||||||||||||||| | ||||| || || ||||| |||||||| Sbjct 9258082 GGTGGAGCGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCA 9258141 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| ||||||||| || ||||| || ||||| Sbjct 9258142 GATTCTCATGGAGAATGTTCACTCAGAGATGTA 9258174 >seq83 Length=10591344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 116585 CTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGC 116644 ||||| || ||||||||||| || || || || || || |||||| || || |||| Sbjct 7359346 CTGCGAGAAAACCCCCGCCGCTTTGTTATCTTTCCTATCGAATACCATGATATCTGGCAG 7359287 Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| || || ||||| || |||||||| | ||||||||| || || || ||| Sbjct 7359286 ATGTACAAGAAAGCAGAGGCCTCCTTCTGGACGGCGGAGGAGGTGAGCCCGTTCAGAGAC 7359227 Query 116705 ACGAGC 116710 || || Sbjct 7359226 CCGTGC 7359221 >seq45 Length=18186770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGT-AAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| | ||||| ||||||||| || ||||| |||||||| | || | || | Sbjct 11996677 AAAATGCAAGTCTTCGTGAAAAACGCTGACCGGCAAGACCATCACTCTGGAGGCGGAGCC 11996618 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || || || | | | |||| |||| || || | | || || |||||| | | | Sbjct 11996617 CAGCGCCACCATCGGTTACGCG-AAGGCCAAGATCCAGAATAAGGAAGGCATCATCCCAG 11996559 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || ||| ||| ||||||| |||| || || | | ||| || || | Sbjct 11996558 ACCAGCAGCGTCTCCTCTTTGCGGGCAGGCAGCCAGAAGATGGTCACACTCTTTCTGATT 11996499 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||||| |||| ||||| || || || | || ||| | ||| Sbjct 11996498 ACAACATCC---AGGAGTCCACCCTGCACCTGGTCCTGTGTTTTAGGAGTGGC 11996449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515149014264480