Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq116 145 8e-30
seq3 141 1e-28
seq73 138 1e-27
seq42 107 2e-18
seq57 104 2e-17
seq1 98.7 1e-15
seq37 93.3 4e-14
seq56 91.5 2e-13
seq83 84.2 2e-11
seq45 84.2 2e-11
>seq116
Length=7179089
Score = 145 bits (160), Expect = 8e-30
Identities = 162/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || || ||||| ||||||||| | || || || ||
Sbjct 4848593 AAGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 4848534
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | | |||| |||||| ||| || | |||||||||||||||||| | ||
Sbjct 4848533 AGTGACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGA 4848475
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | || |||| || ||||| |||||||| || | |||||| | |||||
Sbjct 4848474 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTA 4848415
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||||||| |||| ||||| || |||
Sbjct 4848414 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 4848381
>seq3
Length=68754498
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| | || || || || |||||||| ||||||||| | || || ||| ||
Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||||| || || | ||||| || ||||| || | |||
Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || || ||| |||||||||||||| || | ||||| ||| || |||
Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| ||| |||| ||||| || ||| ||||| || | || |||
Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGGC 7045130
>seq73
Length=12918409
Score = 138 bits (152), Expect = 1e-27
Identities = 170/231 (74%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| || || || || || |||||||||||||||||| | | || ||| ||
Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | ||||| || || | ||||| || ||||| || | |||
Sbjct 707395 AGTGACACCATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGCATTCCTCCAGAC 707454
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || || | ||| |||||||||| ||| || | ||||| ||| || |||
Sbjct 707455 CAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGATGGCCGCACTCTCTCTGATTAC 707514
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||| ||| |||| ||||| || ||||||||| || | || |||
Sbjct 707515 -ACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGTGCGGTGGC 707564
>seq42
Length=18862759
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| || || || || || || | | |||||||| | || || ||| ||
Sbjct 11622211 AAAATGCAAATCTTTGTGAAGACCCTGACAAGTGAGACCATCACACTAGAAGTTGAACCC 11622152
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | || |||||| || || | ||||| || |||||||| | |||
Sbjct 11622151 AGTGACACCAACATAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 11622092
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || || | ||| |||| || |||||| || | ||||| ||| || |||
Sbjct 11622091 CAGCAGCGGCTGATATTCGCTGGCACACGGCTGGAGGATGGCCGCACTCTCTCTGAATAC 11622032
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908
||||||||||| ||| | | ||| | || ||||||||| ||
Sbjct 11622031 AACATCCAGAAAGAGTCTCCCCTGTACCTGGTGTTGCGCCTG 11621990
>seq57
Length=15126812
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| || ||||||||| | |||||||| || ||||||| ||| ||||| ||||||||
Sbjct 1409698 GACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAA 1409757
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || || |||||||||||||| ||| |||| ||||| || || |
Sbjct 1409758 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTC 1409817
Query 40903 CGCTTGAGGGGCGGC 40917
|| | ||||| |||
Sbjct 1409818 CGTCTTAGGGGTGGC 1409832
>seq1
Length=77654946
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| || || || || || | |||||| |||||||| | || || ||| |
Sbjct 73228319 AAAATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTAGAGGTTGAACCT 73228378
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||||| || || | ||||| || ||||| || | |||
Sbjct 73228379 AGTGACACCATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 73228438
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || || ||| |||||| ||| ||| || | |||| | || |||
Sbjct 73228439 CAGCAGCGGCTGATACTCGCTGGCAAATAGCGGGAGGATGGCTGCACTCAGTCTGATTAC 73228498
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908
| |||||||| ||| |||| ||||| || ||| ||||| ||
Sbjct 73228499 AGCATCCAGAGAGAGCCCACCCTGCACCTGGTGGTGCGCCTG 73228540
>seq37
Length=22002326
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| | || || || | || ||||| | ||||||| | || | ||| ||
Sbjct 20562834 AAAATGCAAATCTCTGTGAAGACCCAGACAGGCAAGAACATCACCCTAGAGGGTGAACCC 20562893
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | || | | |||| || | | ||||| || |||||||| | |||
Sbjct 20562894 AATGACACCATCCAGAATATAAAGGCTAAGAACCCAGACAAGGAAGGCATCCCACCAGAC 20562953
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || || | | | || ||||||||| | || | |||| ||| ||||||
Sbjct 20562954 CAGCAGTGGCTGATATTCCCTGGTAAACAGCTGAAGGATGGCTGCACGCTCTCTGACTAC 20563013
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| ||||||| ||| || ||||| || | |||| || || | || |||
Sbjct 20563014 AACTTCCAGAAAGAGTGCAGCCTGCACCTGGCGTTGGGCCTGCGTGGTGGC 20563064
>seq56
Length=15139244
Score = 91.5 bits (100), Expect = 2e-13
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGTTTCGCCGCCATATTT 117100
|||||||||| || || || || || |||||||| || ||| |||| || ||||||||
Sbjct 9265155 TGGTGGCCTTTGCTGCTGTGGAAGGGGTCTTCTTCTCAGGGTCGTTT-GCTGCCATATTC 9265213
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||| ||||| | || ||||||||||| || || || ||| ||||||||| |||
Sbjct 9265214 TGGCTAAAGAAGAGAGGGCTCATGCCCGGACTCACGTTTTCCAATGAGCTCATCAGCAGA 9265273
Query 117161 GACGAGG 117167
|| ||||
Sbjct 9265274 GATGAGG 9265280
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || ||||||||||||||| | ||||| || || ||||| ||||||||
Sbjct 9258082 GGTGGAGCGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCA 9258141
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
||| ||||||||| || ||||| || |||||
Sbjct 9258142 GATTCTCATGGAGAATGTTCACTCAGAGATGTA 9258174
>seq83
Length=10591344
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 116585 CTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGC 116644
||||| || ||||||||||| || || || || || || |||||| || || ||||
Sbjct 7359346 CTGCGAGAAAACCCCCGCCGCTTTGTTATCTTTCCTATCGAATACCATGATATCTGGCAG 7359287
Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704
|||||||| || || ||||| || |||||||| | ||||||||| || || || |||
Sbjct 7359286 ATGTACAAGAAAGCAGAGGCCTCCTTCTGGACGGCGGAGGAGGTGAGCCCGTTCAGAGAC 7359227
Query 116705 ACGAGC 116710
|| ||
Sbjct 7359226 CCGTGC 7359221
>seq45
Length=18186770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/233 (69%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGT-AAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||||||||| | ||||| ||||||||| || ||||| |||||||| | || | || |
Sbjct 11996677 AAAATGCAAGTCTTCGTGAAAAACGCTGACCGGCAAGACCATCACTCTGGAGGCGGAGCC 11996618
Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
|| || || | | | |||| |||| || || | | || || |||||| | | |
Sbjct 11996617 CAGCGCCACCATCGGTTACGCG-AAGGCCAAGATCCAGAATAAGGAAGGCATCATCCCAG 11996559
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
||||||| || ||| ||| ||||||| |||| || || | | ||| || || |
Sbjct 11996558 ACCAGCAGCGTCTCCTCTTTGCGGGCAGGCAGCCAGAAGATGGTCACACTCTTTCTGATT 11996499
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| ||||| |||| ||||| || || || | || ||| | |||
Sbjct 11996498 ACAACATCC---AGGAGTCCACCCTGCACCTGGTCCTGTGTTTTAGGAGTGGC 11996449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515149014264480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |