Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq116 109 5e-19 seq57 96.9 3e-15 seq7 96.9 3e-15 seq58 91.5 1e-13 seq44 89.7 4e-13 seq4 89.7 4e-13 seq93 86.0 5e-12 seq89 86.0 5e-12 >seq3 Length=68754498 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || ||||||||||| | |||||| ||| Sbjct 7045145 CACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATC 7045204 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| |||||| || || |||||||| || || || ||||| |||||||| Sbjct 7045205 CTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC 7045264 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| || || ||||| | ||| | || Sbjct 7045265 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGT 7045324 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||| | || ||||| Sbjct 7045325 CTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| || | || | || |||| |||||||| ||||| || Sbjct 46699777 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGA 46699718 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || | | ||| || || || |||||||| |||| || | ||||||||| ||||| Sbjct 46699717 CAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 46699658 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || || || || || || || | ||| | ||||||| | || || Sbjct 46699657 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 46699598 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || || || ||||| |||||||||||||| Sbjct 46699597 CTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 >seq116 Length=7179089 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || || ||||| ||| || Sbjct 4848381 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTC 4848440 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| || | |||||| || || || |||||||| ||||| Sbjct 4848441 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 4848500 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 4848501 GATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 4848560 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || ||||| |||||||| Sbjct 4848561 GCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq57 Length=15126812 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 1409813 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1409754 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || |||||| |||||||||||||||| || || || ||||| |||||||| Sbjct 1409753 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 1409698 >seq7 Length=50527172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| || | || | || ||||| |||||||| ||||| || Sbjct 41286041 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGA 41286100 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| ||| ||| || || || |||||||| |||| | | ||||||||| ||||| Sbjct 41286101 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 41286160 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || | Sbjct 41286161 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGC 41286220 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 41286221 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq58 Length=14941408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| || | || | || |||| |||||||| ||||| || Sbjct 5525677 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGA 5525736 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| ||| ||| || || || |||||||| |||| | | ||||||||| ||||| Sbjct 5525737 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 5525796 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 5525797 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 5525856 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || || || ||||| || ||||||||||| Sbjct 5525857 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq44 Length=18557718 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| || | || | || ||||| ||| |||| ||||| || Sbjct 841671 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTT-GAATATTGTAGTCAGA 841729 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || |||||||| |||| || | ||||||||| ||||| Sbjct 841730 CAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 841789 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||||| ||||||| | || || Sbjct 841790 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGA--GTGTCCGAGGGTTCAAC 841847 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || | || ||||| |||||||||||||| Sbjct 841848 CTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895 >seq4 Length=53591480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||||| ||| | || | || ||||| ||||| || ||||| || Sbjct 13584080 TACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAG 13584021 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| ||| ||| || || || |||||||| |||| || | ||||||||| |||| Sbjct 13584020 ACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAG 13583961 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || || || || || | ||| | ||||| | | || | Sbjct 13583960 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAA 13583901 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || | || ||||| |||||||||||||| Sbjct 13583900 CATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq93 Length=9247444 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||||| || | || | || ||||| |||||||| ||||| || Sbjct 8914032 TACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAG 8914091 Query 118570 TCATAGTGCGCGTATCCTCG----AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCG 118625 || ||| ||| ||| || || || |||||||| |||| | | ||||||||| Sbjct 8914092 ACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCA 8914151 Query 118626 GGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC 118685 ||||| || || ||||| || || || || || | ||| | ||||||| | Sbjct 8914152 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGT 8914211 Query 118686 TCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||| || | || || || || || ||||| || ||||||||||| Sbjct 8914212 TCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq89 Length=9688204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| || | || | || ||||||||| |||||||||| || Sbjct 7024324 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTTT-GAATGTTGTAGTCAGA 7024382 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| ||| ||| || || || |||||||| |||| || | ||||| ||| ||||| Sbjct 7024383 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTAATCAGGAGG 7024442 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 7024443 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 7024502 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || || || ||||| || ||| |||||| Sbjct 7024503 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAA--CTGCAT 7024548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433772778917416