Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 1e-20
seq116 109 5e-19
seq57 96.9 3e-15
seq7 96.9 3e-15
seq58 91.5 1e-13
seq44 89.7 4e-13
seq4 89.7 4e-13
seq93 86.0 5e-12
seq89 86.0 5e-12
>seq3
Length=68754498
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | || |||||||| || ||||||||||| | |||||| |||
Sbjct 7045145 CACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATC 7045204
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| |||||||| |||||| || || |||||||| || || || ||||| ||||||||
Sbjct 7045205 CTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC 7045264
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| || || || || | |||| |||||| || || ||||| | ||| | ||
Sbjct 7045265 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGT 7045324
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||| || || ||| | || |||||
Sbjct 7045325 CTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||| || | || | || |||| |||||||| ||||| ||
Sbjct 46699777 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGA 46699718
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| || | | ||| || || || |||||||| |||| || | ||||||||| |||||
Sbjct 46699717 CAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 46699658
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || || || || || || || || | ||| | ||||||| | || ||
Sbjct 46699657 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 46699598
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| | || | || || || || || ||||| ||||||||||||||
Sbjct 46699597 CTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550
>seq116
Length=7179089
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || || |||||||| || || ||||| ||| ||
Sbjct 4848381 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTC 4848440
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || |||| || | |||||| || || || |||||||| |||||
Sbjct 4848441 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 4848500
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| || || | |||| |||||| || ||| ||||| | ||| | || ||
Sbjct 4848501 GATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 4848560
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||||||| || || ||||| ||||||||
Sbjct 4848561 GCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590
>seq57
Length=15126812
Score = 96.9 bits (106), Expect = 3e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1409813 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1409754
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||| || |||||| |||||||||||||||| || || || ||||| ||||||||
Sbjct 1409753 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 1409698
>seq7
Length=50527172
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||| || | || | || ||||| |||||||| ||||| ||
Sbjct 41286041 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGA 41286100
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| ||| ||| || || || |||||||| |||| | | ||||||||| |||||
Sbjct 41286101 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 41286160
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | ||||||| | || |
Sbjct 41286161 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGC 41286220
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 41286221 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
>seq58
Length=14941408
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||| || | || | || |||| |||||||| ||||| ||
Sbjct 5525677 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGA 5525736
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| ||| ||| || || || |||||||| |||| | | ||||||||| |||||
Sbjct 5525737 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 5525796
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | ||||||| | || ||
Sbjct 5525797 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 5525856
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || || || ||||| || |||||||||||
Sbjct 5525857 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904
>seq44
Length=18557718
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||| || | || | || ||||| ||| |||| ||||| ||
Sbjct 841671 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTT-GAATATTGTAGTCAGA 841729
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || ||| || || || |||||||| |||| || | ||||||||| |||||
Sbjct 841730 CAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 841789
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||||| ||||||| | || ||
Sbjct 841790 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGA--GTGTCCGAGGGTTCAAC 841847
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || | || ||||| ||||||||||||||
Sbjct 841848 CTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895
>seq4
Length=53591480
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||||| ||| | || | || ||||| ||||| || ||||| ||
Sbjct 13584080 TACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAG 13584021
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| ||| ||| ||| || || || |||||||| |||| || | ||||||||| ||||
Sbjct 13584020 ACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAG 13583961
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || ||||| || || || || || | ||| | ||||| | | || |
Sbjct 13583960 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAA 13583901
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | || || || | || ||||| ||||||||||||||
Sbjct 13583900 CATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852
>seq93
Length=9247444
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/233 (68%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||||| || | || | || ||||| |||||||| ||||| ||
Sbjct 8914032 TACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAG 8914091
Query 118570 TCATAGTGCGCGTATCCTCG----AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCG 118625
|| ||| ||| ||| || || || |||||||| |||| | | |||||||||
Sbjct 8914092 ACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCA 8914151
Query 118626 GGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC 118685
||||| || || ||||| || || || || || | ||| | ||||||| |
Sbjct 8914152 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGT 8914211
Query 118686 TCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||||| || | || || || || || ||||| || |||||||||||
Sbjct 8914212 TCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
>seq89
Length=9688204
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||| || | || | || ||||||||| |||||||||| ||
Sbjct 7024324 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTTT-GAATGTTGTAGTCAGA 7024382
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| ||| ||| || || || |||||||| |||| || | ||||| ||| |||||
Sbjct 7024383 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTAATCAGGAGG 7024442
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | ||||||| | || ||
Sbjct 7024443 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 7024502
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || || || ||||| || ||| ||||||
Sbjct 7024503 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAA--CTGCAT 7024548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433772778917416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |