Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq73 129 7e-25 seq3 127 2e-24 seq55 105 8e-18 seq57 104 3e-17 seq116 102 9e-17 seq59 100 3e-16 seq1 100 3e-16 seq154 98.7 1e-15 seq58 98.7 1e-15 seq2 98.7 1e-15 >seq73 Length=12918409 Score = 129 bits (142), Expect = 7e-25 Identities = 160/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || | |||||||| ||||| || | Sbjct 707551 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCA 707493 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||| || ||||||||||| || ||||||||||| | || | || |||||| Sbjct 707492 TCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 707433 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || |||| || | | ||||| || | ||| || | | |||||| Sbjct 707432 TCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||||||| || ||||| ||||||||||||||||| Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTT 707335 >seq3 Length=68754498 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| || || || |||||||||| ||||| || | Sbjct 7045143 CGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 7045202 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || ||||||| ||| || ||||||||||| | || | || |||||| Sbjct 7045203 TCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 7045262 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || |||| || | | ||||| || | ||| || || | |||||| Sbjct 7045263 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATG 7045322 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||||||| || ||||| ||| ||||||||||||| Sbjct 7045323 GTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTT 7045360 >seq55 Length=15311949 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 7451575 CTCCCCGTCGGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7451516 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 7451515 TACTAACGAGGAT 7451503 >seq57 Length=15126812 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 9016231 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9016172 Query 60125 ATACTACCGAGGATTGA 60141 |||||| |||||| ||| Sbjct 9016171 ATACTAACGAGGAATGA 9016155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| |||| ||| ||| || || || |||||||||| Sbjct 1409831 CCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1409772 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 1409771 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1409712 Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099 | || ||||||||| ||| || Sbjct 1409711 ATGCCTTCCTTGTCCTGGATCTT 1409689 >seq116 Length=7179089 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 4868376 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 4868435 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 4868436 ACTATACTAACGAGGA 4868451 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4872304 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4872363 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 4872364 TACTAACGAGGAT 4872376 >seq59 Length=14944395 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 27039 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 26980 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 26979 ATACTAACGAGGA 26967 >seq1 Length=77654946 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| | || || ||||||||| | |||| | | Sbjct 73228536 CGCACCACCAGGTGCAGGGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGTGCAGCCA 73228477 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||| || ||||||| ||| || ||||||||||| | || | || |||||| Sbjct 73228476 TCCTCCCGCTATTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 73228417 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || |||| || | ||||| || | ||| || || | |||||| Sbjct 73228416 TCTTGGATCTTAGCCTTGACATTCTTGATGGTGTCACTAGGTTCAACCTCTAGAGTGATG 73228357 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||||| | || ||||| ||||||||||||||||| Sbjct 73228356 GTCTTGCCCATCAGGGTCTTCACAAAGATTTGCATTTT 73228319 >seq154 Length=3898418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2895133 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2895074 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2895073 TACTAACGAGGA 2895062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2915633 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2915692 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2915693 TACTAACGAGGA 2915704 >seq58 Length=14941408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3908022 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3908081 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3908082 TACTAACGAGGA 3908093 >seq2 Length=75421681 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47454002 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47453943 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 47453942 TACTAACGAGGA 47453931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 49858323 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 49858264 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 49858263 TACTAACGAGGA 49858252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571739704147440