Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq73 129 7e-25
seq3 127 2e-24
seq55 105 8e-18
seq57 104 3e-17
seq116 102 9e-17
seq59 100 3e-16
seq1 100 3e-16
seq154 98.7 1e-15
seq58 98.7 1e-15
seq2 98.7 1e-15
>seq73
Length=12918409
Score = 129 bits (142), Expect = 7e-25
Identities = 160/218 (73%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||||||||| |||| ||| ||| || || || | |||||||| ||||| || |
Sbjct 707551 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCA 707493
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||| || ||||||||||| || ||||||||||| | || | || ||||||
Sbjct 707492 TCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 707433
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
|| ||| || |||| || | | ||||| || | ||| || | | ||||||
Sbjct 707432 TCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||||||||||| || ||||| |||||||||||||||||
Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTT 707335
>seq3
Length=68754498
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| ||| ||| || || || |||||||||| ||||| || |
Sbjct 7045143 CGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 7045202
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||| || ||||||| ||| || ||||||||||| | || | || ||||||
Sbjct 7045203 TCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 7045262
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
|| ||| || |||| || | | ||||| || | ||| || || | ||||||
Sbjct 7045263 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATG 7045322
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| |||||||| || ||||| ||| |||||||||||||
Sbjct 7045323 GTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTT 7045360
>seq55
Length=15311949
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 7451575 CTCCCCGTCGGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7451516
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 7451515 TACTAACGAGGAT 7451503
>seq57
Length=15126812
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 9016231 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9016172
Query 60125 ATACTACCGAGGATTGA 60141
|||||| |||||| |||
Sbjct 9016171 ATACTAACGAGGAATGA 9016155
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || || | ||| | |||| |||| ||| ||| || || || ||||||||||
Sbjct 1409831 CCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1409772
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || |||||||| |||||||| ||||| ||||||||||| | ||
Sbjct 1409771 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1409712
Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099
| || ||||||||| ||| ||
Sbjct 1409711 ATGCCTTCCTTGTCCTGGATCTT 1409689
>seq116
Length=7179089
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 4868376 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 4868435
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 4868436 ACTATACTAACGAGGA 4868451
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 4872304 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4872363
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 4872364 TACTAACGAGGAT 4872376
>seq59
Length=14944395
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 27039 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 26980
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 26979 ATACTAACGAGGA 26967
>seq1
Length=77654946
Score = 100 bits (110), Expect = 3e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| ||| ||| | || || ||||||||| | |||| | |
Sbjct 73228536 CGCACCACCAGGTGCAGGGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGTGCAGCCA 73228477
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||| || ||||||| ||| || ||||||||||| | || | || ||||||
Sbjct 73228476 TCCTCCCGCTATTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 73228417
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
|| ||| || |||| || | ||||| || | ||| || || | ||||||
Sbjct 73228416 TCTTGGATCTTAGCCTTGACATTCTTGATGGTGTCACTAGGTTCAACCTCTAGAGTGATG 73228357
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| |||||| | || ||||| |||||||||||||||||
Sbjct 73228356 GTCTTGCCCATCAGGGTCTTCACAAAGATTTGCATTTT 73228319
>seq154
Length=3898418
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2895133 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2895074
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2895073 TACTAACGAGGA 2895062
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2915633 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2915692
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2915693 TACTAACGAGGA 2915704
>seq58
Length=14941408
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 3908022 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3908081
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 3908082 TACTAACGAGGA 3908093
>seq2
Length=75421681
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 47454002 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47453943
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 47453942 TACTAACGAGGA 47453931
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 49858323 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 49858264
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 49858263 TACTAACGAGGA 49858252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571739704147440
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