Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq58 102 1e-16 seq3 102 1e-16 seq138 98.7 1e-15 seq7 98.7 1e-15 seq63 95.1 2e-14 seq44 91.5 2e-13 seq93 87.8 3e-12 seq89 86.0 9e-12 seq31 86.0 9e-12 >seq58 Length=14941408 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| | ||| | ||| | || || |||||| || ||||| || || || Sbjct 5525678 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAGA 5525736 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||||||| |||||||| ||||| Sbjct 5525737 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 5525796 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5525797 AATTCCTTCCTTATCCTG 5525814 >seq3 Length=68754498 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| | ||| | ||| | || || |||||| || ||||| || || || Sbjct 46699776 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAGA 46699718 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || || | ||| || | ||| ||||||||||| |||| ||| |||||||| ||||| Sbjct 46699717 CAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 46699658 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 46699657 AATTCCTTCTTTATCCTG 46699640 >seq138 Length=5537732 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| | ||| | ||| | || || || ||| || ||||| || || || Sbjct 893910 CCACCACGAAGTCTCAGTACAAGATGAACGGTGGACTCCTTTTGA-ATATTGTAGTCAGA 893852 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||| | | ||| || | ||| ||||||| ||| |||||||| |||||||| ||||| Sbjct 893851 AAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGAGG 893792 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 893791 AATTCCTTCCTTATCCTG 893774 >seq7 Length=50527172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| | ||| | ||| | || || || ||| || ||||| || || || Sbjct 41286042 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAGTCAGA 41286100 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||||||| |||||||| ||||| Sbjct 41286101 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 41286160 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 41286161 AATTCCTTCCTTATCCTG 41286178 >seq63 Length=13740492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| ||||| |||| |||| ||||||| | |||| || ||| |||| | || | Sbjct 12331795 TTCCTCCTGGATGCTATGGAAGAGTAGCTCCACGCTCTGGCTTGGCTGTAAAACACTTCA 12331854 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || || || |||||||||||||||||||| || | |||| | Sbjct 12331855 TTGATGTAGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATGTTGGTTTTGTATTGT 12331914 Query 10549 TTAAT 10553 ||||| Sbjct 12331915 TTAAT 12331919 >seq44 Length=18557718 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | ||| | ||| | || || || || || ||||| || || || Sbjct 841672 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTGA-ATATTGTAGTCAGAC 841730 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | ||| || | ||| ||||||||||| |||| ||| |||||||| |||||| Sbjct 841731 AAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 841790 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 841791 ATTCCTTCCTTATCCTG 841807 >seq93 Length=9247444 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || ||||| | |||||| | ||| | ||| | || || || ||| || ||||| || || Sbjct 8914031 GTACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAGTC 8914089 Query 146107 TGAAAGAGTTCTGCTATCATCT----AATTGTTTTCCAGCAAAAATCAATCTTTGCTGAT 146162 || | ||| | | ||| || | ||| ||||||||||| |||||||| ||||||| Sbjct 8914090 AGACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGAT 8914149 Query 146163 CCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| ||||| || Sbjct 8914150 CAGGAGGAATTCCTTCCTTATCCTG 8914174 >seq89 Length=9688204 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | ||| | ||| | || || ||||| || || || || || || Sbjct 7024325 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTTTGA-ATGTTGTAGTCAGAC 7024383 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| ||||||||||| |||| || |||| ||| |||||| Sbjct 7024384 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTAATCAGGAGGA 7024443 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 7024444 ATTCCTTCCTTATCCTG 7024460 >seq31 Length=29319519 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | ||| | | | | || || ||||| ||||| || || || Sbjct 3469712 CCACCACAAAGTCTCAGTACAAGAAGAAGGGTGGACTCTTTTTGAATATTGTAGTCAGAC 3469653 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||| ||| ||||||| |||||||| |||||||| |||||| Sbjct 3469652 AAAGCACGCCCATCTTCCAGTTGCTTTGCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 3469593 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 3469592 ATTCCTTCCTTATCCTG 3469576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743425113116160