Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq58 102 1e-16
seq3 102 1e-16
seq138 98.7 1e-15
seq7 98.7 1e-15
seq63 95.1 2e-14
seq44 91.5 2e-13
seq93 87.8 3e-12
seq89 86.0 9e-12
seq31 86.0 9e-12
>seq58
Length=14941408
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109
||||| | |||||| | ||| | ||| | || || |||||| || ||||| || || ||
Sbjct 5525678 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAGA 5525736
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| ||||||||||| |||||||| |||||||| |||||
Sbjct 5525737 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 5525796
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 5525797 AATTCCTTCCTTATCCTG 5525814
>seq3
Length=68754498
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109
||||| | |||||| | ||| | ||| | || || |||||| || ||||| || || ||
Sbjct 46699776 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAGA 46699718
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| || || | ||| || | ||| ||||||||||| |||| ||| |||||||| |||||
Sbjct 46699717 CAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 46699658
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||||||||| ||
Sbjct 46699657 AATTCCTTCTTTATCCTG 46699640
>seq138
Length=5537732
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| | ||| | ||| | || || || ||| || ||||| || || ||
Sbjct 893910 CCACCACGAAGTCTCAGTACAAGATGAACGGTGGACTCCTTTTGA-ATATTGTAGTCAGA 893852
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| ||| | | ||| || | ||| ||||||| ||| |||||||| |||||||| |||||
Sbjct 893851 AAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGAGG 893792
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 893791 AATTCCTTCCTTATCCTG 893774
>seq7
Length=50527172
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| | ||| | ||| | || || || ||| || ||||| || || ||
Sbjct 41286042 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAGTCAGA 41286100
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| ||||||||||| |||||||| |||||||| |||||
Sbjct 41286101 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 41286160
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 41286161 AATTCCTTCCTTATCCTG 41286178
>seq63
Length=13740492
Score = 95.1 bits (104), Expect = 2e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488
||||| ||||| |||| |||| ||||||| | |||| || ||| |||| | || |
Sbjct 12331795 TTCCTCCTGGATGCTATGGAAGAGTAGCTCCACGCTCTGGCTTGGCTGTAAAACACTTCA 12331854
Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548
||||| | |||||||| || || || |||||||||||||||||||| || | |||| |
Sbjct 12331855 TTGATGTAGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATGTTGGTTTTGTATTGT 12331914
Query 10549 TTAAT 10553
|||||
Sbjct 12331915 TTAAT 12331919
>seq44
Length=18557718
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/137 (75%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||||| | ||| | ||| | || || || || || ||||| || || ||
Sbjct 841672 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTGA-ATATTGTAGTCAGAC 841730
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | ||| || | ||| ||||||||||| |||| ||| |||||||| ||||||
Sbjct 841731 AAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 841790
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 841791 ATTCCTTCCTTATCCTG 841807
>seq93
Length=9247444
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/145 (74%), Gaps = 6/145 (4%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106
|| ||||| | |||||| | ||| | ||| | || || || ||| || ||||| || ||
Sbjct 8914031 GTACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAGTC 8914089
Query 146107 TGAAAGAGTTCTGCTATCATCT----AATTGTTTTCCAGCAAAAATCAATCTTTGCTGAT 146162
|| | ||| | | ||| || | ||| ||||||||||| |||||||| |||||||
Sbjct 8914090 AGACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGAT 8914149
Query 146163 CCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||||||||||| ||||| ||
Sbjct 8914150 CAGGAGGAATTCCTTCCTTATCCTG 8914174
>seq89
Length=9688204
Score = 86.0 bits (94), Expect = 9e-12
Identities = 102/137 (74%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||||| | ||| | ||| | || || ||||| || || || || || ||
Sbjct 7024325 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTTTGA-ATGTTGTAGTCAGAC 7024383
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | | ||| || | ||| ||||||||||| |||| || |||| ||| ||||||
Sbjct 7024384 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTAATCAGGAGGA 7024443
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 7024444 ATTCCTTCCTTATCCTG 7024460
>seq31
Length=29319519
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||||| | ||| | | | | || || ||||| ||||| || || ||
Sbjct 3469712 CCACCACAAAGTCTCAGTACAAGAAGAAGGGTGGACTCTTTTTGAATATTGTAGTCAGAC 3469653
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || | ||| ||| ||||||| |||||||| |||||||| ||||||
Sbjct 3469652 AAAGCACGCCCATCTTCCAGTTGCTTTGCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 3469593
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 3469592 ATTCCTTCCTTATCCTG 3469576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743425113116160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |