Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq57 205 9e-48 seq6 147 2e-30 seq56 113 4e-20 seq83 98.7 9e-16 >seq57 Length=15126812 Score = 205 bits (226), Expect = 9e-48 Identities = 505/759 (67%), Gaps = 19/759 (3%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || |||||||| ||| ||| | || | |||| |||||||| ||| | Sbjct 10750336 ATTCTCTGTTGGGTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGA 10750277 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT----- 16027 ||| || || |||||||||| ||||||| | ||||| || ||||| || |||| | Sbjct 10750276 GAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCT 10750217 Query 16028 GAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 ||| ||| | || | | |||| ||||| || | || || ||||||||||| || Sbjct 10750216 GAA-AATCTTGTTAA----AACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATG 10750162 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 | ||| ||||||||| || |||||||| || || || ||||| | || ||||| | Sbjct 10750161 TTCTGCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGG 10750102 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206 || | | |||||| | || || | | ||||| || | ||| ||||| | ||| || Sbjct 10750101 AACTCCTCTTCTATTCTGACAGCATTGACAATTATTTCCTTGACT-CACTACTCTAATGG 10750043 Query 16207 AGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 || || | ||| || |||| | || | ||||||||| || || || || || | Sbjct 10750042 TTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCG 10749984 Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326 ||| || | ||| | |||||||| || || ||||| ||||| |||| || | |||||| Sbjct 10749983 ACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAA 10749924 Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 ||| | ||||| |||||||||||| || ||| | || ||||| || || | | Sbjct 10749923 TATTGATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATG 10749867 Query 16387 CTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgttt 16446 || || || || | |||| | ||||| | | | ||| || || Sbjct 10749866 TTCTCCATAGGTAGCCTCTTTATCCACAATCCAACACAGGGTCACGTCTGCCTT---CTT 10749810 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 | ||| ||| | || || ||||| || | | | |||||||| |||| | Sbjct 10749809 CATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGT 10749750 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 ||| | || || || | ||| ||||| | ||||| || || ||||| || || || || Sbjct 10749749 GTAAATGTCAATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAA 10749690 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626 ||||| || || | ||||| | ||||| ||||| | ||| | || | | ||| Sbjct 10749689 CCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTT 10749630 Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 ||| || ||||| ||||| || || ||||| || || || Sbjct 10749629 TTCATTTACTATACCATCACTGGCAGCAAAGAAAGCCAG 10749591 >seq6 Length=52350410 Score = 147 bits (162), Expect = 2e-30 Identities = 491/752 (65%), Gaps = 19/752 (3%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| || | ||||| || |||| || || |||| Sbjct 1187456 TTGACATCACTCCCATCCTCTGATACTCTCCTACTCTATTCTCAACTG--TTAGTCTTTC 1187399 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGG-ATTTTT----TGAACAATAGTATTT 16041 ||||| | ||||||| ||| | || ||||| | |||| | |||| ||| | || Sbjct 1187398 CTTCTGGTAAAATATTCTCCCTGAAGTCAAATGATATTTCTACTCTGAA-AATCTTGTTA 1187340 Query 16042 ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101 | || | ||||| | | || || ||||||||||| || ||||| |||||||| Sbjct 1187339 AA---ATTG-AGTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAA 1187284 Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 | ||| || |||| || | || ||||| | |||||||| || | | | |||||| Sbjct 1187283 AGTACAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATTCTAT 1187224 Query 16162 ATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGT 16220 | || || | | ||||| || | ||| | || | | | || || || |||| Sbjct 1187223 CCTGACAGCATTGACAATTATTTCCTTGACT-CGCTGCTCTGATGGTTTGTGTACCAAGT 1187165 Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 | || ||||| | || ||||||||||| || | || || || ||| || | ||| | Sbjct 1187164 GCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCAT 1187105 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 | |||||||| || || ||||| ||||| |||| | | ||| ||| | | ||||| | Sbjct 1187104 TGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAG 1187045 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400 |||||||||||| || ||||| || || |||| || || | || || | || Sbjct 1187044 AACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCG 1186985 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 | ||| | | ||||| |||| | ||| | || ||| ||| Sbjct 1186984 CCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGC---CTCCTTCACAGGAAGCATCG 1186928 Query 16461 TCTCTATTGCATTAAATAAATAAtt-tttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 | || || ||||| | || |||| |||||||| |||| |||| |||| || | Sbjct 1186927 TTTCAATGGCATT-GACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTA 1186869 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || | ||| ||||| || ||| | || || || || || | || || ||| || || Sbjct 1186868 AGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAG 1186809 Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639 | |||||| | ||||| ||||| | ||| | || || |||||||| || ||| | Sbjct 1186808 CGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTG 1186749 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671 |||| || || |||||||| || || | ||| Sbjct 1186748 TCATCACTGGCAGCAAAAAAAGCCAGGACGTG 1186717 >seq56 Length=15139244 Score = 113 bits (124), Expect = 4e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||||||||| ||| | || || ||||||||| | | | || |||||| | | Sbjct 9286087 CTTTAAAAATCGGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGTCATAACCGCAAAA 9286028 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || || ||||| || |||||||||||||||||||||||||| ||||| ||| Sbjct 9286027 CGCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTT 9285968 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||||||||||| || Sbjct 9285967 TCCATAAAATCAAAAGGATTTTCTG 9285943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 16050 CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| | | |||| |||||| || || ||||| || |||||||||||||| ||| ||||| Sbjct 9282925 CCAAGTTCTACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAG 9282866 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 |||||||| || | ||| || | |||||||||||||| Sbjct 9282865 TTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 9282825 >seq83 Length=10591344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || | ||| || | ||| || |||||||| || || ||||| ||||| ||||| || Sbjct 7356160 TCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 7356219 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 7356220 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 7356279 Query 16379 ACCA 16382 |||| Sbjct 7356280 ACCA 7356283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462448994302800