Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq57 205 9e-48
seq6 147 2e-30
seq56 113 4e-20
seq83 98.7 9e-16
>seq57
Length=15126812
Score = 205 bits (226), Expect = 9e-48
Identities = 505/759 (67%), Gaps = 19/759 (3%)
Strand=Plus/Minus
Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972
||| ||| || |||||||| ||| ||| | || | |||| |||||||| ||| |
Sbjct 10750336 ATTCTCTGTTGGGTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGA 10750277
Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT----- 16027
||| || || |||||||||| ||||||| | ||||| || ||||| || |||| |
Sbjct 10750276 GAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCT 10750217
Query 16028 GAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087
||| ||| | || | | |||| ||||| || | || || ||||||||||| ||
Sbjct 10750216 GAA-AATCTTGTTAA----AACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATG 10750162
Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147
| ||| ||||||||| || |||||||| || || || ||||| | || ||||| |
Sbjct 10750161 TTCTGCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGG 10750102
Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206
|| | | |||||| | || || | | ||||| || | ||| ||||| | ||| ||
Sbjct 10750101 AACTCCTCTTCTATTCTGACAGCATTGACAATTATTTCCTTGACT-CACTACTCTAATGG 10750043
Query 16207 AGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266
|| || | ||| || |||| | || | ||||||||| || || || || || |
Sbjct 10750042 TTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCG 10749984
Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326
||| || | ||| | |||||||| || || ||||| ||||| |||| || | ||||||
Sbjct 10749983 ACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAA 10749924
Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386
||| | ||||| |||||||||||| || ||| | || ||||| || || | |
Sbjct 10749923 TATTGATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATG 10749867
Query 16387 CTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgttt 16446
|| || || || | |||| | ||||| | | | ||| || ||
Sbjct 10749866 TTCTCCATAGGTAGCCTCTTTATCCACAATCCAACACAGGGTCACGTCTGCCTT---CTT 10749810
Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506
| ||| ||| | || || ||||| || | | | |||||||| |||| |
Sbjct 10749809 CATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGT 10749750
Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566
||| | || || || | ||| ||||| | ||||| || || ||||| || || || ||
Sbjct 10749749 GTAAATGTCAATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAA 10749690
Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626
||||| || || | ||||| | ||||| ||||| | ||| | || | | |||
Sbjct 10749689 CCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTT 10749630
Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665
||| || ||||| ||||| || || ||||| || || ||
Sbjct 10749629 TTCATTTACTATACCATCACTGGCAGCAAAGAAAGCCAG 10749591
>seq6
Length=52350410
Score = 147 bits (162), Expect = 2e-30
Identities = 491/752 (65%), Gaps = 19/752 (3%)
Strand=Plus/Minus
Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986
||||||| ||| ||| | ||||| || | ||||| || |||| || || ||||
Sbjct 1187456 TTGACATCACTCCCATCCTCTGATACTCTCCTACTCTATTCTCAACTG--TTAGTCTTTC 1187399
Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGG-ATTTTT----TGAACAATAGTATTT 16041
||||| | ||||||| ||| | || ||||| | |||| | |||| ||| | ||
Sbjct 1187398 CTTCTGGTAAAATATTCTCCCTGAAGTCAAATGATATTTCTACTCTGAA-AATCTTGTTA 1187340
Query 16042 ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101
| || | ||||| | | || || ||||||||||| || ||||| ||||||||
Sbjct 1187339 AA---ATTG-AGTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAA 1187284
Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161
| ||| || |||| || | || ||||| | |||||||| || | | | ||||||
Sbjct 1187283 AGTACAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATTCTAT 1187224
Query 16162 ATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGT 16220
| || || | | ||||| || | ||| | || | | | || || || ||||
Sbjct 1187223 CCTGACAGCATTGACAATTATTTCCTTGACT-CGCTGCTCTGATGGTTTGTGTACCAAGT 1187165
Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280
| || ||||| | || ||||||||||| || | || || || ||| || | ||| |
Sbjct 1187164 GCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCAT 1187105
Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340
| |||||||| || || ||||| ||||| |||| | | ||| ||| | | ||||| |
Sbjct 1187104 TGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAG 1187045
Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400
|||||||||||| || ||||| || || |||| || || | || || | ||
Sbjct 1187044 AACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCG 1186985
Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460
| ||| | | ||||| |||| | ||| | || ||| |||
Sbjct 1186984 CCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGC---CTCCTTCACAGGAAGCATCG 1186928
Query 16461 TCTCTATTGCATTAAATAAATAAtt-tttttCTTTGCTATCTAAAATATAAGTATCTATT 16519
| || || ||||| | || |||| |||||||| |||| |||| |||| || |
Sbjct 1186927 TTTCAATGGCATT-GACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTA 1186869
Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579
|| | ||| ||||| || ||| | || || || || || | || || ||| || ||
Sbjct 1186868 AGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAG 1186809
Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639
| |||||| | ||||| ||||| | ||| | || || |||||||| || ||| |
Sbjct 1186808 CGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTG 1186749
Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671
|||| || || |||||||| || || | |||
Sbjct 1186748 TCATCACTGGCAGCAAAAAAAGCCAGGACGTG 1186717
>seq56
Length=15139244
Score = 113 bits (124), Expect = 4e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943
||||||||||| ||| | || || ||||||||| | | | || |||||| | |
Sbjct 9286087 CTTTAAAAATCGGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGTCATAACCGCAAAA 9286028
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|| || || ||||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 9286027 CGCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTT 9285968
Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028
|||||||||||||||||||||| ||
Sbjct 9285967 TCCATAAAATCAAAAGGATTTTCTG 9285943
Score = 84.2 bits (92), Expect = 2e-11
Identities = 80/101 (79%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 16050 CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108
|||| | | |||| |||||| || || ||||| || |||||||||||||| ||| |||||
Sbjct 9282925 CCAAGTTCTACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAG 9282866
Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
|||||||| || | ||| || | ||||||||||||||
Sbjct 9282865 TTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 9282825
>seq83
Length=10591344
Score = 98.7 bits (108), Expect = 9e-16
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || | ||| || | ||| || |||||||| || || ||||| ||||| ||||| ||
Sbjct 7356160 TCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 7356219
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || ||||| || || ||||| ||
Sbjct 7356220 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 7356279
Query 16379 ACCA 16382
||||
Sbjct 7356280 ACCA 7356283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462448994302800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |