Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq52 1079 0.0 seq10 147 2e-30 >seq52 Length=16149810 Score = 1079 bits (1196), Expect = 0.0 Identities = 1085/1403 (77%), Gaps = 21/1403 (1%) Strand=Plus/Plus Query 107226 TTAGTTTGTAATTAAAGGCATTTT-GTTCTGTCCAAGGATCTCCTC---CTCCACCTTGC 107281 ||| |||||||| | |||| |||| |||||||||||||| | | | |||| ||| || Sbjct 6863316 TTAATTTGTAATCAGAGGCCTTTTTGTTCTGTCCAAGGAACCCACCTGGCTCCTCCT-GC 6863374 Query 107282 CTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCT 107341 ||| | |||||| | ||||| | ||| || ||||| || | || Sbjct 6863375 TCCTGCTC---CTCTCCGGTGGGT--ATCCCCGGGCCATGCTTGCGTGGAGGAGG---CT 6863426 Query 107342 TTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCT 107401 ||| || | |||| ||||| || |||||||||| ||||||||||| | || |||| Sbjct 6863427 CTGCTGGCGCTATCACTTGTGGACCGTGGGCTGCTACGTGCTGCTGGCCATCGTGGCTCT 6863486 Query 107402 GAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTT 107461 |||||| ||||| ||| | || |||||| | | |||||||||| |||||||| | Sbjct 6863487 GAGACTCTCCCTAAGGCTCAAGTGTGATTTTAGCCACGTGGATCTGGACTCCAGGGAGCT 6863546 Query 107462 CCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATC 107521 ||||| |||| ||| |||||| | ||||||| |||||||||||| ||||| || || Sbjct 6863547 TCAGAGCCAGCGCTGCAGGGACGTCTTGTACAGGTCCCTGAAGCTGCCCGCAAACAGGTC 6863606 Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| |||| || || || | ||| || ||| ||||||| || || | Sbjct 6863607 CATCAACTGCTCCGGGGTCACCCGGGGAGAGCGGGAGGCCGTGCTCCAGGCTCTGCTCAA 6863666 Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 |||| |||| || | | | |||||| ||| |||| | | | ||||| ||| || Sbjct 6863667 CAACTTGGAGGTCAGGCAGAAGCGGCAGCCCTTCACCGATGACCACTACCTGGCCATGAC 6863726 Query 107642 CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGA 107701 | |||| |||| ||||| | |||| ||||| ||||| |||||||| ||||| | || Sbjct 6863727 CGCCAACTGCGAGCTCTTCAGGACCCAGAGGAAATTCATCCAGTTCCCCCTGAGCAGGGA 6863786 Query 107702 AGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGA 107761 |||| ||||||||||| |||||||| |||||||| || |||||||| || | |||||| Sbjct 6863787 AGAGGCTGACTTCCCCATCGCCTACTCCATGGTGGTTCACGAGAAGATCGAGAGCTTTGA 6863846 Query 107762 ACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAA 107821 ||||||||||||| |||| |||||||||||||| ||||| |||||||||||| || Sbjct 6863847 GAGGCTGCTGCGAGCTTTGTACGCCCCTCAGAACATCTACTGCGTCCACGTGGATCACAA 6863906 Query 107822 GTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTT 107881 |||||||||| | ||| | |||| |||| ||||||| |||||||||||||| ||||| Sbjct 6863907 GTCCCCAGAGTCCTTCGCAAAGGCTGTCAGGGCCATTGCCTCCTGCTTCCCCAACGTCTT 6863966 Query 107882 CATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCT 107941 | ||||||||||| ||||| | ||||| |||||||| |||||||| ||||| |||||||| Sbjct 6863967 CGTGGCCAGTAAGCTGGTCACAGTGGTCTATGCCTCGTGGTCCAGGGTGCAGGCTGACCT 6864026 Query 107942 GAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATG 108001 ||||| |||||||||||||||| ||| | ||||| ||||||||||| ||||| || || Sbjct 6864027 CAACTGCATGGAAGACTTGCTCCGAAGCCCCGTGCCCTGGAAGTACTTTCTGAACACCTG 6864086 Query 108002 CGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAA 108061 |||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||| Sbjct 6864087 CGGGACAGACTTCCCCATCAAGACCAATGCCGAGATGGTCCAGGCCCTCAAGTTATTGAA 6864146 Query 108062 GGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATA 108121 || | || ||| |||||||| ||||| || ||| | ||||| ||| ||||||| || Sbjct 6864147 AGGCAGGAGCAGCATGGAGTCGGAGGTGCCCACTGCCTACAAAAGAAACCGCTGGAGGTA 6864206 Query 108122 CCGCTATGAGGTGACAGACACACTGTACCCT-------ACCAGCAAGATGAAGGACCCTC 108174 |||||| | |||| |||| | ||| ||||| ||| || || |||| ||| | Sbjct 6864207 CCGCTACGTGGTGGGAGACGCGCTG-ACCCTGTCCGTCACCGGCCAGGAGAAGACCCCGC 6864265 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 ||||| | ||| | |||||||||| || |||||||| | ||||| ||||||| ||| Sbjct 6864266 CCCCTCACAATGTCACCATGTTCACTGGCAATGCCTACATAGTGGCTTCTCGAGACTTCA 6864325 Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294 |||| || ||| || | || ||||||||| |||| ||||||||| ||||| |||| Sbjct 6864326 TCCAGCACTCCTTGAACCATCCCAAATCCCAACAACTGATTGAATGGGCAAAAGATACCT 6864385 Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTG 108354 | ||||| || || |||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 6864386 ACAGCCCGGATGAGCACCTCTGGGCCACCCTTCAGCGTGCCTCGTGGATGCCTGGTTCTC 6864445 Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414 | || |||| ||||| | ||| || ||||||| |||| |||||||| ||||||| Sbjct 6864446 TGCCCTCACACCACAAGTTTGACACGTCCGACATGATGTCCATTGCCAGGCTGGTCAAGT 6864505 Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474 |||| ||||||||||||| |||| ||||||||||| | || |||||||| |||| Sbjct 6864506 GGCAAAACCACGAGGGAGACATCAGTCACGGGGCGCCTTACTCCCCTTGCTCTGGCATCC 6864565 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | | |||||| ||||||| | ||| | ||||||||| ||||||||||||| ||||| | Sbjct 6864566 ACCAGAGGGCGGTCTGCATCTTTGGGTCTGGGGACCTGCACTGGATTCTCCAAAACCACC 6864625 Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594 |||| |||| |||||||||||||| | |||||| ||||||| ||||||||| | || | Sbjct 6864626 ACCTGCTGGCCAACAAGTTTGACCCAAAGGTGGACGATAACGCCCTGCAGTGTCTGGAGG 6864685 Query 108595 AGTACCTACGTCATAAGGCCATC 108617 ||||||||||| | ||||||||| Sbjct 6864686 AGTACCTACGTTACAAGGCCATC 6864708 >seq10 Length=48447015 Score = 147 bits (162), Expect = 2e-30 Identities = 585/901 (65%), Gaps = 46/901 (5%) Strand=Plus/Minus Query 107680 TACAGTTCCCACTGAGTAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTC 107738 ||||| ||| || |||| |||||| || | ||||||| ||||| || || || ||||| Sbjct 23183591 TACAGAACCC-CTCAGTAGAGAAGAAGCGA-ACTTCCCAATTGCATATTCCATAGTGGTT 23183534 Query 107739 CATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATA 107798 ||| | |||||||||| |||| |||| || | ||| | || |||||||| | Sbjct 23183533 CATCACAAGATTGAAATGCTTGACAGGCTCCTAAGGGCCATCTACATGCCTCAGAATTTC 23183474 Query 107799 TACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATT 107858 ||||| |||||||||| ||| || ||||| ||| || ||||| |||| |||| Sbjct 23183473 TACTGCATCCACGTGGACAAGAAATCAGAGGAGACCTTCTTAGCTGCGGTGAAGGGCATT 23183414 Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918 ||||| ||| || ||||| ||||||| |||||| ||||||||||| || Sbjct 23183413 GCCTCCTGTTTCAGTAACGTCTTTGTGGCCAGCCAGTTGGAGAATGTGGTTTATGCATCA 23183354 Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT--GC 107976 ||| | |||| || || ||||| ||||| ||| | ||| | || | || | ||| || Sbjct 23183353 TGGAGCCGAGTTCAGGCCGACCTCAACTGCATGCAGGACCT-CTACCGA-ATGAGTGCGC 23183296 Query 107977 CATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036 |||| ||||| | ||| || |||| || || || || || ||||| ||||| Sbjct 23183295 GCTGGAGATACTTGATCAATCTGTGTGGGATGGATTTTCCTATTAAAACCAACCTCGAGA 23183236 Query 108037 TGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTT 108093 | ||| | |||||| | | ||| | |||| | || | | || | || | Sbjct 23183235 TTGTCAGGAAGCTCAAGTCACTCATGGGAGAAAACAACCTAGAAACGGAGAAGATGCCAT 23183176 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATG---AGGTGA--------CAGACAC 108142 | | ||| || | | |||||| | | |||| |||| | ||| Sbjct 23183175 CCAA---TAAAGAAGAAAGGTGGAAAAAGCATTATGCCATTGTGAATGGGAAGCTGACGA 23183119 Query 108143 AC-TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCC--ATGTTCAC 108199 || || || ||| ||| || | ||| | || || |||| |||| | Sbjct 23183118 ACATGGGGACTGCCA--AAG-TGCGGCCCCCACTCC-----AA---ACCCCTCTGTTTTC 23183070 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 ||| | |||||| ||||||| | | ||| | ||| |||| |||| || || Sbjct 23183069 AGGCAGTGCCTACTTTGTGGTCAGTAGAGAATATGTGGGCTATGTGCTAGAGAATGAAAA 23183010 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 ||| ||| | | ||||||| | ||||| |||||||| || || |||||||||| Sbjct 23183009 CATCCAGAGATTTATGGAATGGGCGCAGGACACTTATAGCCCAGATGAGTACCTCTGGGC 23182950 Query 108320 CACCCTTCAGCGTGCTCCGTG-GATGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATC 108375 ||| | || | | ||| || | | ||||| || | |||| ||||| ||| || Sbjct 23182949 CACTATCCAAAG-GATCCCTGAGGTCCCTGGATCACTCTCCTTAAGCCA---CAAATACG 23182894 Query 108376 ACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATG 108435 || | || ||||||| ||| | | ||| | ||||||||||||||| || || |||| Sbjct 23182893 ACTTGTCTGACATGAATGCTGTTGTGAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATG 23182834 Query 108436 TCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTT 108495 | | ||| || || || |||||||| ||| |||| | | || | ||||| | Sbjct 23182833 TTTCTAAGGGAGCCCCCTACCCACCCTGCAGTGGGGTCCACGTGCGCTCCGTGTGCATCT 23182774 Query 108496 ACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTG 108555 || || |||||| || |||||| || | || || ||| | || || || ||||||| Sbjct 23182773 TTGGAGCTGGGGACTTGAGCTGGATGCTGCGAAAACACCACTTTTTTGCCAATAAGTTTG 23182714 Query 108556 A 108556 | Sbjct 23182713 A 23182713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348222543155652