Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq52 1079 0.0
seq10 147 2e-30
>seq52
Length=16149810
Score = 1079 bits (1196), Expect = 0.0
Identities = 1085/1403 (77%), Gaps = 21/1403 (1%)
Strand=Plus/Plus
Query 107226 TTAGTTTGTAATTAAAGGCATTTT-GTTCTGTCCAAGGATCTCCTC---CTCCACCTTGC 107281
||| |||||||| | |||| |||| |||||||||||||| | | | |||| ||| ||
Sbjct 6863316 TTAATTTGTAATCAGAGGCCTTTTTGTTCTGTCCAAGGAACCCACCTGGCTCCTCCT-GC 6863374
Query 107282 CTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCT 107341
||| | |||||| | ||||| | ||| || ||||| || | ||
Sbjct 6863375 TCCTGCTC---CTCTCCGGTGGGT--ATCCCCGGGCCATGCTTGCGTGGAGGAGG---CT 6863426
Query 107342 TTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCT 107401
||| || | |||| ||||| || |||||||||| ||||||||||| | || ||||
Sbjct 6863427 CTGCTGGCGCTATCACTTGTGGACCGTGGGCTGCTACGTGCTGCTGGCCATCGTGGCTCT 6863486
Query 107402 GAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTT 107461
|||||| ||||| ||| | || |||||| | | |||||||||| |||||||| |
Sbjct 6863487 GAGACTCTCCCTAAGGCTCAAGTGTGATTTTAGCCACGTGGATCTGGACTCCAGGGAGCT 6863546
Query 107462 CCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATC 107521
||||| |||| ||| |||||| | ||||||| |||||||||||| ||||| || ||
Sbjct 6863547 TCAGAGCCAGCGCTGCAGGGACGTCTTGTACAGGTCCCTGAAGCTGCCCGCAAACAGGTC 6863606
Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581
||||||||| || ||| |||| || || || | ||| || ||| ||||||| || || |
Sbjct 6863607 CATCAACTGCTCCGGGGTCACCCGGGGAGAGCGGGAGGCCGTGCTCCAGGCTCTGCTCAA 6863666
Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641
|||| |||| || | | | |||||| ||| |||| | | | ||||| ||| ||
Sbjct 6863667 CAACTTGGAGGTCAGGCAGAAGCGGCAGCCCTTCACCGATGACCACTACCTGGCCATGAC 6863726
Query 107642 CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGA 107701
| |||| |||| ||||| | |||| ||||| ||||| |||||||| ||||| | ||
Sbjct 6863727 CGCCAACTGCGAGCTCTTCAGGACCCAGAGGAAATTCATCCAGTTCCCCCTGAGCAGGGA 6863786
Query 107702 AGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGA 107761
|||| ||||||||||| |||||||| |||||||| || |||||||| || | ||||||
Sbjct 6863787 AGAGGCTGACTTCCCCATCGCCTACTCCATGGTGGTTCACGAGAAGATCGAGAGCTTTGA 6863846
Query 107762 ACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAA 107821
||||||||||||| |||| |||||||||||||| ||||| |||||||||||| ||
Sbjct 6863847 GAGGCTGCTGCGAGCTTTGTACGCCCCTCAGAACATCTACTGCGTCCACGTGGATCACAA 6863906
Query 107822 GTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTT 107881
|||||||||| | ||| | |||| |||| ||||||| |||||||||||||| |||||
Sbjct 6863907 GTCCCCAGAGTCCTTCGCAAAGGCTGTCAGGGCCATTGCCTCCTGCTTCCCCAACGTCTT 6863966
Query 107882 CATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCT 107941
| ||||||||||| ||||| | ||||| |||||||| |||||||| ||||| ||||||||
Sbjct 6863967 CGTGGCCAGTAAGCTGGTCACAGTGGTCTATGCCTCGTGGTCCAGGGTGCAGGCTGACCT 6864026
Query 107942 GAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATG 108001
||||| |||||||||||||||| ||| | ||||| ||||||||||| ||||| || ||
Sbjct 6864027 CAACTGCATGGAAGACTTGCTCCGAAGCCCCGTGCCCTGGAAGTACTTTCTGAACACCTG 6864086
Query 108002 CGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAA 108061
|||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||
Sbjct 6864087 CGGGACAGACTTCCCCATCAAGACCAATGCCGAGATGGTCCAGGCCCTCAAGTTATTGAA 6864146
Query 108062 GGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATA 108121
|| | || ||| |||||||| ||||| || ||| | ||||| ||| ||||||| ||
Sbjct 6864147 AGGCAGGAGCAGCATGGAGTCGGAGGTGCCCACTGCCTACAAAAGAAACCGCTGGAGGTA 6864206
Query 108122 CCGCTATGAGGTGACAGACACACTGTACCCT-------ACCAGCAAGATGAAGGACCCTC 108174
|||||| | |||| |||| | ||| ||||| ||| || || |||| ||| |
Sbjct 6864207 CCGCTACGTGGTGGGAGACGCGCTG-ACCCTGTCCGTCACCGGCCAGGAGAAGACCCCGC 6864265
Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234
||||| | ||| | |||||||||| || |||||||| | ||||| ||||||| |||
Sbjct 6864266 CCCCTCACAATGTCACCATGTTCACTGGCAATGCCTACATAGTGGCTTCTCGAGACTTCA 6864325
Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294
|||| || ||| || | || ||||||||| |||| ||||||||| ||||| ||||
Sbjct 6864326 TCCAGCACTCCTTGAACCATCCCAAATCCCAACAACTGATTGAATGGGCAAAAGATACCT 6864385
Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTG 108354
| ||||| || || |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 6864386 ACAGCCCGGATGAGCACCTCTGGGCCACCCTTCAGCGTGCCTCGTGGATGCCTGGTTCTC 6864445
Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414
| || |||| ||||| | ||| || ||||||| |||| |||||||| |||||||
Sbjct 6864446 TGCCCTCACACCACAAGTTTGACACGTCCGACATGATGTCCATTGCCAGGCTGGTCAAGT 6864505
Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474
|||| ||||||||||||| |||| ||||||||||| | || |||||||| ||||
Sbjct 6864506 GGCAAAACCACGAGGGAGACATCAGTCACGGGGCGCCTTACTCCCCTTGCTCTGGCATCC 6864565
Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534
| | |||||| ||||||| | ||| | ||||||||| ||||||||||||| ||||| |
Sbjct 6864566 ACCAGAGGGCGGTCTGCATCTTTGGGTCTGGGGACCTGCACTGGATTCTCCAAAACCACC 6864625
Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594
|||| |||| |||||||||||||| | |||||| ||||||| ||||||||| | || |
Sbjct 6864626 ACCTGCTGGCCAACAAGTTTGACCCAAAGGTGGACGATAACGCCCTGCAGTGTCTGGAGG 6864685
Query 108595 AGTACCTACGTCATAAGGCCATC 108617
||||||||||| | |||||||||
Sbjct 6864686 AGTACCTACGTTACAAGGCCATC 6864708
>seq10
Length=48447015
Score = 147 bits (162), Expect = 2e-30
Identities = 585/901 (65%), Gaps = 46/901 (5%)
Strand=Plus/Minus
Query 107680 TACAGTTCCCACTGAGTAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTC 107738
||||| ||| || |||| |||||| || | ||||||| ||||| || || || |||||
Sbjct 23183591 TACAGAACCC-CTCAGTAGAGAAGAAGCGA-ACTTCCCAATTGCATATTCCATAGTGGTT 23183534
Query 107739 CATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATA 107798
||| | |||||||||| |||| |||| || | ||| | || |||||||| |
Sbjct 23183533 CATCACAAGATTGAAATGCTTGACAGGCTCCTAAGGGCCATCTACATGCCTCAGAATTTC 23183474
Query 107799 TACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATT 107858
||||| |||||||||| ||| || ||||| ||| || ||||| |||| ||||
Sbjct 23183473 TACTGCATCCACGTGGACAAGAAATCAGAGGAGACCTTCTTAGCTGCGGTGAAGGGCATT 23183414
Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918
||||| ||| || ||||| ||||||| |||||| ||||||||||| ||
Sbjct 23183413 GCCTCCTGTTTCAGTAACGTCTTTGTGGCCAGCCAGTTGGAGAATGTGGTTTATGCATCA 23183354
Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT--GC 107976
||| | |||| || || ||||| ||||| ||| | ||| | || | || | ||| ||
Sbjct 23183353 TGGAGCCGAGTTCAGGCCGACCTCAACTGCATGCAGGACCT-CTACCGA-ATGAGTGCGC 23183296
Query 107977 CATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036
|||| ||||| | ||| || |||| || || || || || ||||| |||||
Sbjct 23183295 GCTGGAGATACTTGATCAATCTGTGTGGGATGGATTTTCCTATTAAAACCAACCTCGAGA 23183236
Query 108037 TGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTT 108093
| ||| | |||||| | | ||| | |||| | || | | || | || |
Sbjct 23183235 TTGTCAGGAAGCTCAAGTCACTCATGGGAGAAAACAACCTAGAAACGGAGAAGATGCCAT 23183176
Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATG---AGGTGA--------CAGACAC 108142
| | ||| || | | |||||| | | |||| |||| | |||
Sbjct 23183175 CCAA---TAAAGAAGAAAGGTGGAAAAAGCATTATGCCATTGTGAATGGGAAGCTGACGA 23183119
Query 108143 AC-TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCC--ATGTTCAC 108199
|| || || ||| ||| || | ||| | || || |||| |||| |
Sbjct 23183118 ACATGGGGACTGCCA--AAG-TGCGGCCCCCACTCC-----AA---ACCCCTCTGTTTTC 23183070
Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259
||| | |||||| ||||||| | | ||| | ||| |||| |||| || ||
Sbjct 23183069 AGGCAGTGCCTACTTTGTGGTCAGTAGAGAATATGTGGGCTATGTGCTAGAGAATGAAAA 23183010
Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319
||| ||| | | ||||||| | ||||| |||||||| || || ||||||||||
Sbjct 23183009 CATCCAGAGATTTATGGAATGGGCGCAGGACACTTATAGCCCAGATGAGTACCTCTGGGC 23182950
Query 108320 CACCCTTCAGCGTGCTCCGTG-GATGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATC 108375
||| | || | | ||| || | | ||||| || | |||| ||||| ||| ||
Sbjct 23182949 CACTATCCAAAG-GATCCCTGAGGTCCCTGGATCACTCTCCTTAAGCCA---CAAATACG 23182894
Query 108376 ACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATG 108435
|| | || ||||||| ||| | | ||| | ||||||||||||||| || || ||||
Sbjct 23182893 ACTTGTCTGACATGAATGCTGTTGTGAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATG 23182834
Query 108436 TCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTT 108495
| | ||| || || || |||||||| ||| |||| | | || | ||||| |
Sbjct 23182833 TTTCTAAGGGAGCCCCCTACCCACCCTGCAGTGGGGTCCACGTGCGCTCCGTGTGCATCT 23182774
Query 108496 ACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTG 108555
|| || |||||| || |||||| || | || || ||| | || || || |||||||
Sbjct 23182773 TTGGAGCTGGGGACTTGAGCTGGATGCTGCGAAAACACCACTTTTTTGCCAATAAGTTTG 23182714
Query 108556 A 108556
|
Sbjct 23182713 A 23182713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348222543155652
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