Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq19 156 3e-33
>seq19
Length=34640225
Score = 156 bits (172), Expect = 3e-33
Identities = 343/509 (67%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 20041 GAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTA 20100
|||||||| || | || ||||| || || ||||| |||||| | || ||| | |
Sbjct 4393887 GAATTTCCTCTACTCACATTCAAACGCGTGTTCTGGAAGGGCGTTTTGGAGGAGCTGCTG 4393946
Query 20101 TGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGG 20160
||| | | || ||||| |||||| | | | || | || | ||| ||||| |||
Sbjct 4393947 TGGCT-ACCAAGGGATCCACAAATGCCAAAAA-CTGTCATCCAAGGCAGTGAAGATCTGG 4394004
Query 20161 AGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAAC-CGTCAAGAGGG 20219
|| |||| || | | ||||| ||||| |||| || | | || ||||| ||
Sbjct 4394005 GATGCTAATGGGTCCCAAGATTTTTTCGACAGCT-TGGAATTCTCTGCACGACAAGAAGG 4394063
Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279
|| ||||| || |||||||| || || ||||| ||||| || | || | || ||
Sbjct 4394064 GGTCTTGGGCCCAGTGTATGGTTTCCAGTGGAGGCATTTCGGGGTGGACCACAAAGATAT 4394123
Query 20280 GAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAA 20339
| | || || | | ||||||||||| || ||||| ||||| || ||| || || ||
Sbjct 4394124 GCATTCAGATGACTCGGGACAAGGAGTGGACCAATTGCAAAAAGTCATTGATACCATCAA 4394183
Query 20340 AACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399
||| ||||| ||||||||||||| | | |||||||||||| | ||||| | ||| |
Sbjct 4394184 AACCAACCCTGACGACAGAAGAATCACCATGTGCGCCTGGAACCCAAAAGACCTTCCTCT 4394243
Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459
||||| ||||||| | ||| || |||| | || || | ||| || |||
Sbjct 4394244 GATGGCGCTGCCTCCCGGCCATGCCCTCTGCCTGCTCTAAGTGGTGAATGGGGAGCCGTC 4394303
Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519
|| || |||| || | || | || ||||| ||||||| | ||||| || || ||
Sbjct 4394304 CTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGCGCGCTTCAACATCGCCAG 4394363
Query 20520 TTATGCGCTGCTTACGTATATGATTGCAC 20548
||||| ||||| || || |||| ||||
Sbjct 4394364 CTATGCCCTGCTCACCTACATGAGCGCAC 4394392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399130980630610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |