Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq19 156 3e-33 >seq19 Length=34640225 Score = 156 bits (172), Expect = 3e-33 Identities = 343/509 (67%), Gaps = 4/509 (1%) Strand=Plus/Plus Query 20041 GAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTA 20100 |||||||| || | || ||||| || || ||||| |||||| | || ||| | | Sbjct 4393887 GAATTTCCTCTACTCACATTCAAACGCGTGTTCTGGAAGGGCGTTTTGGAGGAGCTGCTG 4393946 Query 20101 TGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGG 20160 ||| | | || ||||| |||||| | | | || | || | ||| ||||| ||| Sbjct 4393947 TGGCT-ACCAAGGGATCCACAAATGCCAAAAA-CTGTCATCCAAGGCAGTGAAGATCTGG 4394004 Query 20161 AGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAAC-CGTCAAGAGGG 20219 || |||| || | | ||||| ||||| |||| || | | || ||||| || Sbjct 4394005 GATGCTAATGGGTCCCAAGATTTTTTCGACAGCT-TGGAATTCTCTGCACGACAAGAAGG 4394063 Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279 || ||||| || |||||||| || || ||||| ||||| || | || | || || Sbjct 4394064 GGTCTTGGGCCCAGTGTATGGTTTCCAGTGGAGGCATTTCGGGGTGGACCACAAAGATAT 4394123 Query 20280 GAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAA 20339 | | || || | | ||||||||||| || ||||| ||||| || ||| || || || Sbjct 4394124 GCATTCAGATGACTCGGGACAAGGAGTGGACCAATTGCAAAAAGTCATTGATACCATCAA 4394183 Query 20340 AACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 ||| ||||| ||||||||||||| | | |||||||||||| | ||||| | ||| | Sbjct 4394184 AACCAACCCTGACGACAGAAGAATCACCATGTGCGCCTGGAACCCAAAAGACCTTCCTCT 4394243 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| ||||||| | ||| || |||| | || || | ||| || ||| Sbjct 4394244 GATGGCGCTGCCTCCCGGCCATGCCCTCTGCCTGCTCTAAGTGGTGAATGGGGAGCCGTC 4394303 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 || || |||| || | || | || ||||| ||||||| | ||||| || || || Sbjct 4394304 CTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGCGCGCTTCAACATCGCCAG 4394363 Query 20520 TTATGCGCTGCTTACGTATATGATTGCAC 20548 ||||| ||||| || || |||| |||| Sbjct 4394364 CTATGCCCTGCTCACCTACATGAGCGCAC 4394392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399130980630610