Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq57 192 6e-44 seq6 156 4e-33 seq83 86.0 6e-12 seq175 84.2 2e-11 >seq57 Length=15126812 Score = 192 bits (212), Expect = 6e-44 Identities = 592/904 (65%), Gaps = 25/904 (3%) Strand=Plus/Minus Query 13894 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTT 13953 ||| || || || ||||| | || | |||| ||||| || ||| |||||||||| || Sbjct 10750324 GTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTT 10750265 Query 13954 ACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATC 14013 ||||| ||||| ||| | ||||| || |||||||| ||| | | || | || | Sbjct 10750264 TCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTT 10750205 Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073 | |||| | ||| | | | || || || | || ||||| | || ||||||| Sbjct 10750204 AAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGT 10750145 Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133 |||||||| || || | || ||||| | | || | || || | |||||| Sbjct 10750144 GCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCT 10750085 Query 14134 CACAGCCTCGTTTATAATAATCGTAA-TAATTTCATTAGAAGGAGGATATTTTAGATGTT 14192 ||||| | | || || | | | | | | | || | || ||| || || | Sbjct 10750084 GACAGCATTGACAATTATTTCCTTGACTCACTACTCTA-ATGGTTTGTATACCAGGTGCT 10750026 Query 14193 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 14252 | || | | || | ||||||||| || | |||||||||| ||||||||| || | | Sbjct 10750025 TGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGG 10749967 Query 14253 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 14312 ||||||| | || ||||||| ||| |||| || | ||||||||||| || || || | Sbjct 10749966 AAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAAC 10749907 Query 14313 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14372 | ||||||| | | | || |||||||| |||| | |||||||| | | || | Sbjct 10749906 CAGAAAAGATTTCTTTCGCA---GCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCCT 10749850 Query 14373 TTTTGTTCGATATCCATTTTCTAGCCCAT--TCAGAtttt--tttttAATAAAATCCATT 14428 ||| ||||| || | | || ||| | | || || ||| || ||| Sbjct 10749849 CTTT-------ATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGCATC 10749797 Query 14429 GTTTCAATAGCATTAAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487 ||||||| ||||| || | | || |||| ||||| | | |||| | ||||| Sbjct 10749796 CTTTCAATGGCATTGAAGAGGAAGTCCCTT-TCTTTGACATCTTTTGTGTAAATGTCAAT 10749738 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 ||| | || ||||| |||| |||||||| ||||| || || || || ||||| ||||| Sbjct 10749737 AAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACA 10749678 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | ||||||| ||| || ||| | ||||| || ||| |||||||| ||||| Sbjct 10749677 GCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTAT 10749618 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA--TTGCTCTTCATTG 14665 ||||||||| || ||||| || |||| | | |||||||| || |||||| Sbjct 10749617 ACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGC 10749558 Query 14666 CTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14723 | || || ||| | ||| || ||||| ||||||||||| | ||| ||||||| | Sbjct 10749557 TTCAGGGCTTCCCAGT--GCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGA 10749500 Query 14724 AACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14783 | || ||||| || ||||| ||| || || | ||| |||||||| | | Sbjct 10749499 AGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 14784 CAAA 14787 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 156 bits (172), Expect = 4e-33 Identities = 293/430 (68%), Gaps = 3/430 (1%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| || || ||||||||| ||||||||| || || |||||||| | Sbjct 1187150 CAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGAGG 1187091 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| ||| |||| | | ||| ||| ||| || || || || ||||||| Sbjct 1187090 CCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGATG 1187031 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 ||||| || || ||||||| |||| |||||||| | || | ||||| | Sbjct 1187030 ATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTGCA 1186971 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||| |||| || | | || | | | ||| |||||||| ||||| Sbjct 1186970 ATCCAACGCAAGGCCCCGTC---TGCCTCCTTCACAGGAAGCATCGTTTCAATGGCATTG 1186914 Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | | |||| | ||||| | | | ||| | || ||| |||| | || ||||| Sbjct 1186913 ACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTACATC 1186854 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||||| |||||||||| || || | || || ||| ||||| | |||||||| | Sbjct 1186853 TCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGTAATT 1186794 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 || || ||| | ||||| || ||||| |||||||| ||| | ||||||| || ||| Sbjct 1186793 TGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGCAGCA 1186734 Query 14624 AAAAATGCCA 14633 ||||| |||| Sbjct 1186733 AAAAAAGCCA 1186724 >seq83 Length=10591344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 7355304 GACATCACTCCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 7355363 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 |||||||| ||||| ||||| || |||||||| || Sbjct 7355364 TCCAGTGAAATATTCTCCATGAAGTCAAATGGGTT 7355398 >seq175 Length=2612143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/257 (67%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||||| ||||| || | |||||| |||| | | || ||||||||| | || Sbjct 1473362 TATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTT 1473303 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 ||||||| || ||| || | | | ||||| | ||| || |||||||| || || Sbjct 1473302 AAATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATAT 1473243 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 || ||||| || ||||| |||| ||| ||||| ||||| ||| ||||| Sbjct 1473242 CTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAAC 1473183 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || || || | | ||| ||||||||||||| || || |||| || | ||| Sbjct 1473182 GTGCACGTCCTAATGCGCTCTA----CCAAATTTTCATTTACAATTTCATCGCTGGTTGC 1473127 Query 14623 AAAAAATGCCAATATGT 14639 |||||| || || |||| Sbjct 1473126 AAAAAAGGCTAAGATGT 1473110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482279892470640