Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq57 192 6e-44
seq6 156 4e-33
seq83 86.0 6e-12
seq175 84.2 2e-11
>seq57
Length=15126812
Score = 192 bits (212), Expect = 6e-44
Identities = 592/904 (65%), Gaps = 25/904 (3%)
Strand=Plus/Minus
Query 13894 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTT 13953
||| || || || ||||| | || | |||| ||||| || ||| |||||||||| ||
Sbjct 10750324 GTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTT 10750265
Query 13954 ACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATC 14013
||||| ||||| ||| | ||||| || |||||||| ||| | | || | || |
Sbjct 10750264 TCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTT 10750205
Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073
| |||| | ||| | | | || || || | || ||||| | || |||||||
Sbjct 10750204 AAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGT 10750145
Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133
|||||||| || || | || ||||| | | || | || || | ||||||
Sbjct 10750144 GCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCT 10750085
Query 14134 CACAGCCTCGTTTATAATAATCGTAA-TAATTTCATTAGAAGGAGGATATTTTAGATGTT 14192
||||| | | || || | | | | | | | || | || ||| || || |
Sbjct 10750084 GACAGCATTGACAATTATTTCCTTGACTCACTACTCTA-ATGGTTTGTATACCAGGTGCT 10750026
Query 14193 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 14252
| || | | || | ||||||||| || | |||||||||| ||||||||| || | |
Sbjct 10750025 TGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGG 10749967
Query 14253 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 14312
||||||| | || ||||||| ||| |||| || | ||||||||||| || || || |
Sbjct 10749966 AAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAAC 10749907
Query 14313 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14372
| ||||||| | | | || |||||||| |||| | |||||||| | | || |
Sbjct 10749906 CAGAAAAGATTTCTTTCGCA---GCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCCT 10749850
Query 14373 TTTTGTTCGATATCCATTTTCTAGCCCAT--TCAGAtttt--tttttAATAAAATCCATT 14428
||| ||||| || | | || ||| | | || || ||| || |||
Sbjct 10749849 CTTT-------ATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGCATC 10749797
Query 14429 GTTTCAATAGCATTAAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487
||||||| ||||| || | | || |||| ||||| | | |||| | |||||
Sbjct 10749796 CTTTCAATGGCATTGAAGAGGAAGTCCCTT-TCTTTGACATCTTTTGTGTAAATGTCAAT 10749738
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
||| | || ||||| |||| |||||||| ||||| || || || || ||||| |||||
Sbjct 10749737 AAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACA 10749678
Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607
| ||||||| ||| || ||| | ||||| || ||| |||||||| |||||
Sbjct 10749677 GCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTAT 10749618
Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA--TTGCTCTTCATTG 14665
||||||||| || ||||| || |||| | | |||||||| || ||||||
Sbjct 10749617 ACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGC 10749558
Query 14666 CTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14723
| || || ||| | ||| || ||||| ||||||||||| | ||| ||||||| |
Sbjct 10749557 TTCAGGGCTTCCCAGT--GCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGA 10749500
Query 14724 AACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14783
| || ||||| || ||||| ||| || || | ||| |||||||| | |
Sbjct 10749499 AGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440
Query 14784 CAAA 14787
||||
Sbjct 10749439 CAAA 10749436
>seq6
Length=52350410
Score = 156 bits (172), Expect = 4e-33
Identities = 293/430 (68%), Gaps = 3/430 (1%)
Strand=Plus/Minus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||||||||| || || ||||||||| ||||||||| || || |||||||| |
Sbjct 1187150 CAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGAGG 1187091
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323
|| ||||||| ||| |||| | | ||| ||| ||| || || || || |||||||
Sbjct 1187090 CCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGATG 1187031
Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383
||||| || || ||||||| |||| |||||||| | || | ||||| |
Sbjct 1187030 ATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTGCA 1186971
Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443
||||| |||| || | | || | | | ||| |||||||| |||||
Sbjct 1186970 ATCCAACGCAAGGCCCCGTC---TGCCTCCTTCACAGGAAGCATCGTTTCAATGGCATTG 1186914
Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503
| | |||| | ||||| | | | ||| | || ||| |||| | || |||||
Sbjct 1186913 ACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTACATC 1186854
Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563
||||| |||||||||| || || | || || ||| ||||| | |||||||| |
Sbjct 1186853 TCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGTAATT 1186794
Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623
|| || ||| | ||||| || ||||| |||||||| ||| | ||||||| || |||
Sbjct 1186793 TGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGCAGCA 1186734
Query 14624 AAAAATGCCA 14633
||||| ||||
Sbjct 1186733 AAAAAAGCCA 1186724
>seq83
Length=10591344
Score = 86.0 bits (94), Expect = 6e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || |||
Sbjct 7355304 GACATCACTCCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 7355363
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992
|||||||| ||||| ||||| || |||||||| ||
Sbjct 7355364 TCCAGTGAAATATTCTCCATGAAGTCAAATGGGTT 7355398
>seq175
Length=2612143
Score = 84.2 bits (92), Expect = 2e-11
Identities = 173/257 (67%), Gaps = 4/257 (2%)
Strand=Plus/Minus
Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442
|||||||| ||||| || | |||||| |||| | | || ||||||||| | ||
Sbjct 1473362 TATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTT 1473303
Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502
||||||| || ||| || | | | ||||| | ||| || |||||||| || ||
Sbjct 1473302 AAATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATAT 1473243
Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562
|| ||||| || ||||| |||| ||| ||||| ||||| ||| |||||
Sbjct 1473242 CTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAAC 1473183
Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622
|| || || | | ||| ||||||||||||| || || |||| || | |||
Sbjct 1473182 GTGCACGTCCTAATGCGCTCTA----CCAAATTTTCATTTACAATTTCATCGCTGGTTGC 1473127
Query 14623 AAAAAATGCCAATATGT 14639
|||||| || || ||||
Sbjct 1473126 AAAAAAGGCTAAGATGT 1473110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482279892470640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |