Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq7 93.3 3e-14
seq116 86.0 5e-12
>seq7
Length=50527172
Score = 93.3 bits (102), Expect = 3e-14
Identities = 171/250 (68%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| ||||| | ||||| || || |
Sbjct 41286019 AAGACTTCTTCCTTTTTTTAGCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACT 41286078
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| |||||||| |||||||| | || || | |||||||| ||| || || ||| |||
Sbjct 41286079 CCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGA 41286138
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| | ||| || ||||| || | ||||||||||| || | ||| || | |
Sbjct 41286139 TCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 41286198
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| | |||||| ||| || | || | ||||||| | || || || | ||||| || |
Sbjct 41286199 CTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGA 41286258
Query 18316 AAATTTGCAT 18325
|||| |||||
Sbjct 41286259 AAATCTGCAT 41286268
>seq116
Length=7179089
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 4848379 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 4848438
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||| || || ||
Sbjct 4848439 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4848498
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | | | ||||||| |||||| || | ||||||| |
Sbjct 4848499 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4848558
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||||| || || ||||| || ||||| ||
Sbjct 4848559 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379293615767010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |