Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 3e-14 seq116 86.0 5e-12 >seq7 Length=50527172 Score = 93.3 bits (102), Expect = 3e-14 Identities = 171/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| ||||| | ||||| || || | Sbjct 41286019 AAGACTTCTTCCTTTTTTTAGCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACT 41286078 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | |||||||| |||||||| | || || | |||||||| ||| || || ||| ||| Sbjct 41286079 CCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGA 41286138 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | | ||| || ||||| || | ||||||||||| || | ||| || | | Sbjct 41286139 TCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 41286198 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | |||||| ||| || | || | ||||||| | || || || | ||||| || | Sbjct 41286199 CTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGA 41286258 Query 18316 AAATTTGCAT 18325 |||| ||||| Sbjct 41286259 AAATCTGCAT 41286268 >seq116 Length=7179089 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 4848379 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 4848438 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||| || || || Sbjct 4848439 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4848498 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 4848499 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4848558 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || ||||| || ||||| || Sbjct 4848559 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379293615767010