Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 6e-24
seq73 109 5e-19
seq57 91.5 1e-13
seq1 82.4 7e-11
>seq3
Length=68754498
Score = 125 bits (138), Expect = 6e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| || || | |||||||| || || ||
Sbjct 19122999 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAAGTTGCTACATTTGATGGTT 19123058
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||| ||||| || || || || ||||| ||||||||||||||||| |||
Sbjct 19123059 CCCAGGTTCTGCTGATTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTACGGGGTG 19123118
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||||||| ||||||||||||||| ||
Sbjct 19123119 CCCGTCTCTGTCTGCGACTCGATGATGGC 19123147
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| |||||||| | || ||||| ||||| ||||| || |||||| | || ||||||||
Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| |||| | ||||| | || |||||||||||| | || || |||
Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || ||| |||||||||||||| |||| || ||| | |||||
Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||||| || ||||| || || || || |||||
Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGT 7045149
>seq73
Length=12918409
Score = 109 bits (120), Expect = 5e-19
Identities = 121/159 (76%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| |||||||| || || ||||| ||||| |||||||| |||||| | | ||||||||
Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394
Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|||| |||| | ||||| || ||| | |||||||||||| | || || ||
Sbjct 707395 AGTGACACCATCGAGAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATTCCTCCAGA 707453
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||| || |||||||||||||||||| ||| ||
Sbjct 707454 CCAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGA 707492
>seq57
Length=15126812
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||||||||||||| | || || |||||||||||||| || ||||||||||| ||| ||||
Sbjct 1409697 GGACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGA 1409756
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| ||| | ||||| ||||| || ||||| || || || || ||||| ||
Sbjct 1409757 AGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCT 1409816
Query 31405 TAGACTGAGGGGCGG 31419
| || ||||| ||
Sbjct 1409817 CCGTCTTAGGGGTGG 1409831
>seq1
Length=77654946
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| |||||||| || || ||||| |||| ||||| || ||||| | || ||||||||
Sbjct 73228319 AAAATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTAGAGGTTGAACCT 73228378
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| || | | ||||| | || |||||||||||| | || || |||
Sbjct 73228379 AGTGACACCATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 73228438
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || ||| ||||||||||| || ||| ||
Sbjct 73228439 CAGCAGCGGCTGATACTCGCTGGCAAATAGCGGGAGGA 73228476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445705675472160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |