Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 125 6e-24 seq73 109 5e-19 seq57 91.5 1e-13 seq1 82.4 7e-11 >seq3 Length=68754498 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || | |||||||| || || || Sbjct 19122999 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAAGTTGCTACATTTGATGGTT 19123058 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||| ||||| || || || || ||||| ||||||||||||||||| ||| Sbjct 19123059 CCCAGGTTCTGCTGATTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTACGGGGTG 19123118 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 19123119 CCCGTCTCTGTCTGCGACTCGATGATGGC 19123147 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| | || ||||| ||||| ||||| || |||||| | || |||||||| Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || || ||| Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || ||| |||||||||||||| |||| || ||| | ||||| Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| || || || || ||||| Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGT 7045149 >seq73 Length=12918409 Score = 109 bits (120), Expect = 5e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || || ||||| ||||| |||||||| |||||| | | |||||||| Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| |||| | ||||| || ||| | |||||||||||| | || || || Sbjct 707395 AGTGACACCATCGAGAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATTCCTCCAGA 707453 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||||||||||||| ||| || Sbjct 707454 CCAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGA 707492 >seq57 Length=15126812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || |||||||||||||| || ||||||||||| ||| |||| Sbjct 1409697 GGACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGA 1409756 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||| | ||||| ||||| || ||||| || || || || ||||| || Sbjct 1409757 AGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCT 1409816 Query 31405 TAGACTGAGGGGCGG 31419 | || ||||| || Sbjct 1409817 CCGTCTTAGGGGTGG 1409831 >seq1 Length=77654946 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || || ||||| |||| ||||| || ||||| | || |||||||| Sbjct 73228319 AAAATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTAGAGGTTGAACCT 73228378 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| || | | ||||| | || |||||||||||| | || || ||| Sbjct 73228379 AGTGACACCATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 73228438 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||| ||||||||||| || ||| || Sbjct 73228439 CAGCAGCGGCTGATACTCGCTGGCAAATAGCGGGAGGA 73228476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445705675472160