Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq57 123 5e-23 seq6 104 5e-17 seq83 93.3 8e-14 >seq57 Length=15126812 Score = 123 bits (136), Expect = 5e-23 Identities = 289/431 (67%), Gaps = 15/431 (3%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || |||||||| | ||| |||||| | | ||| | || ||||| || || | Sbjct 10749871 TTGTAGCTTTTGCTGCTGCGAAAGAAATCTTTTCT---GGTTCTTTTGCATCAATATTTT 10749927 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| ||| | ||||||| ||||| | |||| |||| | ||| | | | Sbjct 10749928 GGCTCAAGAAACAGGGACTGATGCCTGGCCTCACATTTTCCAGTGAGCTTATTAGTCGAG 10749987 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || ||| | ||| | || ||| | ||| || |||| || | | || | | | Sbjct 10749988 ATGAGGGTTTACAT-GTGATTTTACCTGCCTGGTGTTCAAGCACC---TGGTATACAAAC 10750043 Query 102096 CATCAAGAGAAAGGATTCTTGAAA----TTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| | ||| | || || | || |||||| || | ||| |||| ||| | || Sbjct 10750044 CATTA-GAGTAGTGAGTCAAGGAAATAATTGTCAATG---CTGTCAGAATAGAAGAGGAG 10750099 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || ||||||| || ||||||| || || | |||||||| |||| || |||| ||| Sbjct 10750100 TTCCTCACAGAGGCCTTGCCTGTGAAGTTCATTGGAATGAATTGCACTTTAATGAAGCAG 10750159 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||||||||||||||||||| | || || | |||||||| | | ||| | | Sbjct 10750160 AACATTGAATTTGTGGCAGACAGGCTTATGCTGGAAATGGGTTTTAACAAGATTTTCAGA 10750219 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || ||||| || |||||||| | |||||| || || ||||| ||||| | | Sbjct 10750220 GTAGAAAACCCATTTGACTTCATGGAGATTATTTCACTAGAAGGAAAGACTAACTTCTCT 10750279 Query 102332 GAAAAGAGAGT 102342 || |||||||| Sbjct 10750280 GAGAAGAGAGT 10750290 >seq6 Length=52350410 Score = 104 bits (114), Expect = 5e-17 Identities = 216/319 (68%), Gaps = 11/319 (3%) Strand=Plus/Plus Query 101917 TGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTG 101976 ||| || ||||||| || ||||||||| ||||| |||| | || ||| | | ||||| Sbjct 1187004 TGTAGCTCTTGCTGCTGTGGAAGGAATCATCTTTTCTGGTTCTTTTGCACCAACATTCTG 1187063 Query 101977 GATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGA 102036 | ||| ||| ||| | ||||||| ||||| | ||||||||| | ||| | || Sbjct 1187064 GCTCAGGAAACAGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATTAGTCAAGA 1187123 Query 102037 CGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCC 102096 || ||||| || | || ||||| ||| || |||| || | || || | | || Sbjct 1187124 TGAGGGTCTACACTGTGATTTTGCCTGCCTGATGTTCAAGCAC---TTGGTACACAAACC 1187180 Query 102097 ATCAAGAGAAAGGATTCTTGAAA----TTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 |||| ||| | || || | || |||||| || | ||| | || ||| | || Sbjct 1187181 ATCA-GAGCAGCGAGTCAAGGAAATAATTGTCAATG---CTGTCAGGATAGAATAGGAGA 1187236 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | |||||| || ||||||| || | | |||| || || | || |||| |||| Sbjct 1187237 TCTTCACAGAAGCCTTGCCTGTGAAGCTCATTGGAACAAATTGTACTTTAATGAAGCAGT 1187296 Query 102213 ACATTGAATTTGTGGCAGA 102231 ||||||||||||||||||| Sbjct 1187297 ACATTGAATTTGTGGCAGA 1187315 >seq83 Length=10591344 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||||||||||||| |||| | || ||||| || |||||| Sbjct 7356281 GTAGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 7356222 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 ||||||| |||| | ||||||| ||||| | ||||||||| | ||| Sbjct 7356221 CTCAAGAAACGGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATT 7356171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989445823767590